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Volumn 8, Issue 1, 2015, Pages

Engineering improved bio-jet fuel tolerance in Escherichia coli using a transgenic library from the hydrocarbon-degrader Marinobacter aquaeolei

Author keywords

Biofuel tolerance; Genomic library; Marinobacter aquaeolei; Monoterpene; Pinene; Transgenic; YceI

Indexed keywords

BACTERIA; BIOFUELS; CELL ENGINEERING; ESCHERICHIA COLI; FUELS; GENES; HYDROCARBONS; JET FUEL; METABOLIC ENGINEERING; MICROBIOLOGY; MICROORGANISMS; WATER POLLUTION;

EID: 84959498612     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-015-0347-3     Document Type: Article
Times cited : (23)

References (41)
  • 2
    • 57049098094 scopus 로고    scopus 로고
    • Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels
    • 1:CAS:528:DC%2BD1cXhsVKrtLjO
    • Lee SK, Chou H, Ham TS, Lee TS, Keasling JD. Metabolic engineering of microorganisms for biofuels production: From bugs to synthetic biology to fuels. Curr Opin Biotechnol. 2008;19(6):556-63.
    • (2008) Curr Opin Biotechnol , vol.19 , Issue.6 , pp. 556-563
    • Lee, S.K.1    Chou, H.2    Ham, T.S.3    Lee, T.S.4    Keasling, J.D.5
  • 3
    • 57049150206 scopus 로고    scopus 로고
    • Selection and optimization of microbial hosts for biofuels production
    • 1:CAS:528:DC%2BD1cXhsVKrt7vE
    • Fischer CR, Klein-Marcuschamer D, Stephanopoulos G. Selection and optimization of microbial hosts for biofuels production. Metab Eng. 2008;10(6):295-304.
    • (2008) Metab Eng , vol.10 , Issue.6 , pp. 295-304
    • Fischer, C.R.1    Klein-Marcuschamer, D.2    Stephanopoulos, G.3
  • 4
    • 77956311544 scopus 로고    scopus 로고
    • Tracking hydrocarbon plume transport and biodegradation at Deepwater Horizon
    • 1:CAS:528:DC%2BC3cXht1CgtrfP
    • Camilli R, Reddy CM, Yoerger DR, Van Mooy BAS, Jakuba MV, Kinsey JC, et al. Tracking hydrocarbon plume transport and biodegradation at Deepwater Horizon. Science. 2010;330(6001):201-4.
    • (2010) Science , vol.330 , Issue.6001 , pp. 201-204
    • Camilli, R.1    Reddy, C.M.2    Yoerger, D.R.3    Van Mooy, B.A.S.4    Jakuba, M.V.5    Kinsey, J.C.6
  • 5
    • 0034976599 scopus 로고    scopus 로고
    • Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E
    • 1:CAS:528:DC%2BD3MXks1Cku7c%3D
    • Rojas A, Duque E, Mosqueda G, Golden G, Hurtado A, Ramos JL, et al. Three efflux pumps are required to provide efficient tolerance to toluene in Pseudomonas putida DOT-T1E. J Bacteriol. 2001;183(13):3967-73.
    • (2001) J Bacteriol , vol.183 , Issue.13 , pp. 3967-3973
    • Rojas, A.1    Duque, E.2    Mosqueda, G.3    Golden, G.4    Hurtado, A.5    Ramos, J.L.6
  • 6
    • 0032935779 scopus 로고    scopus 로고
    • Marinobacter aquaeolei sp. Nov., a halophilic bacterium isolated from a Vietnamese oil-producing well
    • 1:CAS:528:DyaK1MXjt1Crurk%3D
    • Huu NB, Denner EB, Ha DT, Wanner G, Stan-Lotter H. Marinobacter aquaeolei sp. nov., a halophilic bacterium isolated from a Vietnamese oil-producing well. Int J Syst Bacteriol. 1999;49(Pt 2):367-75.
    • (1999) Int J Syst Bacteriol , vol.49 , Issue.PT 2 , pp. 367-375
    • Huu, N.B.1    Denner, E.B.2    Ha, D.T.3    Wanner, G.4    Stan-Lotter, H.5
  • 8
    • 33747043510 scopus 로고    scopus 로고
    • Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis
    • 1:CAS:528:DC%2BD28XnvVygt7Y%3D
    • Schneiker S, dos Santos VAPM, Bartels D, Bekel T, Brecht M, Buhrmester J, et al. Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis. Nat Biotechnol. 2006;24(8):997-1004.
    • (2006) Nat Biotechnol , vol.24 , Issue.8 , pp. 997-1004
    • Schneiker, S.1    Dos Santos, V.A.P.M.2    Bartels, D.3    Bekel, T.4    Brecht, M.5    Buhrmester, J.6
  • 9
    • 77956299931 scopus 로고    scopus 로고
    • Deep-sea oil plume enriches indigenous oil-degrading bacteria
    • 10.1126/science.1195979 1:CAS:528:DC%2BC3cXht1CgtrfI
    • Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Sci NY. 2010;330(6001):204-8. doi: 10.1126/science.1195979.
    • (2010) Sci NY. , vol.330 , Issue.6001 , pp. 204-208
    • Hazen, T.C.1    Dubinsky, E.A.2    DeSantis, T.Z.3    Andersen, G.L.4    Piceno, Y.M.5    Singh, N.6
  • 11
    • 84865350728 scopus 로고    scopus 로고
    • Alleviating monoterpene toxicity using a two-phase extractive fermentation for the bioproduction of jet fuel mixtures in Saccharomyces cerevisiae
    • 1:CAS:528:DC%2BC38XnsFyjs7Y%3D
    • Brennan TCR, Turner CD, Krömer JO, Nielsen LK. Alleviating monoterpene toxicity using a two-phase extractive fermentation for the bioproduction of jet fuel mixtures in Saccharomyces cerevisiae. Biotechnol Bioeng. 2012;109(10):2513-22.
    • (2012) Biotechnol Bioeng , vol.109 , Issue.10 , pp. 2513-2522
    • Brennan, T.C.R.1    Turner, C.D.2    Krömer, J.O.3    Nielsen, L.K.4
  • 12
    • 77149168163 scopus 로고    scopus 로고
    • High-density renewable fuels based on the selective dimerization of pinenes
    • 1:CAS:528:DC%2BD1MXhsVWhtrzI
    • Harvey BG, Wright ME, Quintana RL. High-density renewable fuels based on the selective dimerization of pinenes. Energy Fuels. 2010;24(1):267-73.
    • (2010) Energy Fuels , vol.24 , Issue.1 , pp. 267-273
    • Harvey, B.G.1    Wright, M.E.2    Quintana, R.L.3
  • 13
    • 84891797161 scopus 로고    scopus 로고
    • The compatibility of potential bioderived fuels with Jet A-1 aviation kerosene
    • 1:CAS:528:DC%2BC2cXhvVWmur0%3D
    • Chuck CJ, Donnelly J. The compatibility of potential bioderived fuels with Jet A-1 aviation kerosene. Appl Energy. 2014;118:83-91.
    • (2014) Appl Energy , vol.118 , pp. 83-91
    • Chuck, C.J.1    Donnelly, J.2
  • 15
    • 84879829307 scopus 로고    scopus 로고
    • Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production
    • 1:CAS:528:DC%2BC3sXhsVWqsr%2FP
    • Alonso-Gutierrez J, Chan R, Batth TS, Adams PD, Keasling JD, Petzold CJ, et al. Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production. Metab Eng. 2013;19:33-41.
    • (2013) Metab Eng , vol.19 , pp. 33-41
    • Alonso-Gutierrez, J.1    Chan, R.2    Batth, T.S.3    Adams, P.D.4    Keasling, J.D.5    Petzold, C.J.6
  • 16
    • 80053172430 scopus 로고    scopus 로고
    • Engineering microbes for tolerance to next-generation biofuels
    • 1:CAS:528:DC%2BC3MXhtlyntr%2FL
    • Dunlop MJ. Engineering microbes for tolerance to next-generation biofuels. Biotechnol Biofuels. 2011;4:32.
    • (2011) Biotechnol Biofuels , vol.4 , pp. 32
    • Dunlop, M.J.1
  • 18
    • 77953022341 scopus 로고    scopus 로고
    • A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation
    • 1:CAS:528:DC%2BC3cXntVegsLc%3D
    • Nicolaou SA, Gaida SM, Papoutsakis ET. A comparative view of metabolite and substrate stress and tolerance in microbial bioprocessing: From biofuels and chemicals, to biocatalysis and bioremediation. Metab Eng. 2010;12(4):307-31.
    • (2010) Metab Eng , vol.12 , Issue.4 , pp. 307-331
    • Nicolaou, S.A.1    Gaida, S.M.2    Papoutsakis, E.T.3
  • 19
    • 84907550509 scopus 로고    scopus 로고
    • Tools for developing tolerance to toxic chemicals in microbial systems and perspectives on moving the field forward and into the industrial setting
    • Peabody GL, Winkler J, Kao KC. Tools for developing tolerance to toxic chemicals in microbial systems and perspectives on moving the field forward and into the industrial setting. Curr Opin Chem Eng. 2014;6:9-17.
    • (2014) Curr Opin Chem Eng , vol.6 , pp. 9-17
    • Peabody, G.L.1    Winkler, J.2    Kao, K.C.3
  • 20
    • 84877319992 scopus 로고    scopus 로고
    • Transporter-mediated biofuel secretion
    • 1:CAS:528:DC%2BC3sXptFGrtL4%3D
    • Doshi R, Nguyen T, Chang G. Transporter-mediated biofuel secretion. Proc Natl Acad Sci USA. 2013;110(19):7642-7. doi: 10.1073/pnas.1301358110.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.19 , pp. 7642-7647
    • Doshi, R.1    Nguyen, T.2    Chang, G.3
  • 21
    • 84877878130 scopus 로고    scopus 로고
    • Directed evolution of an E. Coli inner membrane transporter for improved efflux of biofuel molecules
    • 1:CAS:528:DC%2BC3sXhtVamsrjN
    • Foo JL, Leong SSJ. Directed evolution of an E. coli inner membrane transporter for improved efflux of biofuel molecules. Biotechnol Biofuels. 2013;6(1):81. doi: 10.1186/1754-6834-6-81.
    • (2013) Biotechnol Biofuels , vol.6 , Issue.1 , pp. 81
    • Foo, J.L.1    Leong, S.S.J.2
  • 22
    • 79952432805 scopus 로고    scopus 로고
    • Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli
    • 1:CAS:528:DC%2BC3MXjsFGrsrk%3D
    • Reyes LH, Almario MP, Kao KC. Genomic library screens for genes involved in n-butanol tolerance in Escherichia coli. PLoS One. 2011;6(3):e17678.
    • (2011) PLoS One , vol.6 , Issue.3 , pp. e17678
    • Reyes, L.H.1    Almario, M.P.2    Kao, K.C.3
  • 23
    • 36348946895 scopus 로고    scopus 로고
    • Improved adaptation to heat, cold, and solvent tolerance in Lactobacillus plantarum
    • 1:CAS:528:DC%2BD2sXhtlaqtbjE
    • Fiocco D, Capozzi V, Goffin P, Hols P, Spano G. Improved adaptation to heat, cold, and solvent tolerance in Lactobacillus plantarum. Appl Microbiol Biotechnol. 2007;77(4):909-15.
    • (2007) Appl Microbiol Biotechnol , vol.77 , Issue.4 , pp. 909-915
    • Fiocco, D.1    Capozzi, V.2    Goffin, P.3    Hols, P.4    Spano, G.5
  • 24
    • 77950629484 scopus 로고    scopus 로고
    • Metabolite stress and tolerance in the production of biofuels and chemicals: Gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum
    • 1:CAS:528:DC%2BC3cXisFKltr0%3D
    • Alsaker KV, Paredes C, Papoutsakis ET. Metabolite stress and tolerance in the production of biofuels and chemicals: Gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum. Biotechnol Bioeng. 2010;105(6):1131-47.
    • (2010) Biotechnol Bioeng , vol.105 , Issue.6 , pp. 1131-1147
    • Alsaker, K.V.1    Paredes, C.2    Papoutsakis, E.T.3
  • 25
    • 14244256556 scopus 로고    scopus 로고
    • Genome-wide analysis of the general stress response network in Escherichia coli: S-Dependent genes, promoters, and sigma factor selectivity
    • 1:CAS:528:DC%2BD2MXhvFKmt7Y%3D
    • Weber H, Polen T, Heuveling J, Wendisch VF, Hengge R. Genome-wide analysis of the general stress response network in Escherichia coli: S-Dependent genes, promoters, and sigma factor selectivity. J Bacteriol. 2005;187(5):1591-603.
    • (2005) J Bacteriol , vol.187 , Issue.5 , pp. 1591-1603
    • Weber, H.1    Polen, T.2    Heuveling, J.3    Wendisch, V.F.4    Hengge, R.5
  • 26
    • 84871402855 scopus 로고    scopus 로고
    • Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli
    • 1:CAS:528:DC%2BC3sXnvFamtA%3D%3D
    • Woodruff LBA, Pandhal J, Ow SY, Karimpour-Fard A, Weiss SJ, Wright PC, et al. Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli. Metab Eng. 2013;15(C):124-33.
    • (2013) Metab Eng , vol.15 , Issue.C , pp. 124-133
    • Woodruff, L.B.A.1    Pandhal, J.2    Ow, S.Y.3    Karimpour-Fard, A.4    Weiss, S.J.5    Wright, P.C.6
  • 27
    • 77955430660 scopus 로고    scopus 로고
    • Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering
    • 1:CAS:528:DC%2BC3cXpvFKntro%3D
    • Hong M-E, Lee K-S, Yu BJ, Sung Y-J, Park SM, Koo HM, et al. Identification of gene targets eliciting improved alcohol tolerance in Saccharomyces cerevisiae through inverse metabolic engineering. J Biotechnol. 2010;149(1-2):52-9.
    • (2010) J Biotechnol , vol.149 , Issue.1-2 , pp. 52-59
    • Hong, M.-E.1    Lee, K.-S.2    Yu, B.J.3    Sung, Y.-J.4    Park, S.M.5    Koo, H.M.6
  • 28
    • 84868633840 scopus 로고    scopus 로고
    • Exploring the combinatorial genomic space in Escherichia coli for ethanol tolerance
    • 1:CAS:528:DC%2BC38Xht12hsrzI
    • Nicolaou SA, Gaida SM, Papoutsakis ET. Exploring the combinatorial genomic space in Escherichia coli for ethanol tolerance. Biotechnol J. 2012;7(11):1337-45.
    • (2012) Biotechnol J , vol.7 , Issue.11 , pp. 1337-1345
    • Nicolaou, S.A.1    Gaida, S.M.2    Papoutsakis, E.T.3
  • 29
    • 84904555171 scopus 로고    scopus 로고
    • Exploring the heterologous genomic space for building, stepwise, complex, multicomponent tolerance to toxic chemicals
    • 1:CAS:528:DC%2BC2cXhsFahtb8%3D
    • Zingaro KA, Nicolaou SA, Yuan Y, Papoutsakis ET. Exploring the heterologous genomic space for building, stepwise, complex, multicomponent tolerance to toxic chemicals. ACS Synth Biol. 2014;3(7):476-86.
    • (2014) ACS Synth Biol. , vol.3 , Issue.7 , pp. 476-486
    • Zingaro, K.A.1    Nicolaou, S.A.2    Yuan, Y.3    Papoutsakis, E.T.4
  • 31
    • 84920903437 scopus 로고    scopus 로고
    • Improving microbial biogasoline production in Escherichia coli using tolerance engineering
    • 1:CAS:528:DC%2BC2MXjvFGku7g%3D
    • Foo JL, Jensen HM, Dahl RH, George K, Keasling JD, Lee TS, et al. Improving microbial biogasoline production in Escherichia coli using tolerance engineering. MBio. 2014;5(6):e01932.
    • (2014) MBio. , vol.5 , Issue.6 , pp. e01932
    • Foo, J.L.1    Jensen, H.M.2    Dahl, R.H.3    George, K.4    Keasling, J.D.5    Lee, T.S.6
  • 32
    • 33845442201 scopus 로고    scopus 로고
    • Engineering yeast transcription machinery for improved ethanol tolerance and production
    • 1:CAS:528:DC%2BD28Xht1OntL%2FP
    • Alper H, Moxley J, Nevoigt E, Fink GR, Stephanopoulos G. Engineering yeast transcription machinery for improved ethanol tolerance and production. Science. 2006;314(5805):1565-8.
    • (2006) Science , vol.314 , Issue.5805 , pp. 1565-1568
    • Alper, H.1    Moxley, J.2    Nevoigt, E.3    Fink, G.R.4    Stephanopoulos, G.5
  • 34
    • 0017085802 scopus 로고
    • A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. Coli genome
    • 1:STN:280:DyaE2s%2FisVSntg%3D%3D
    • Clarke L, Carbon J. A colony bank containing synthetic Col El hybrid plasmids representative of the entire E. coli genome. Cell. 1976;9(1):91-9.
    • (1976) Cell. , vol.9 , Issue.1 , pp. 91-99
    • Clarke, L.1    Carbon, J.2
  • 35
    • 80053175916 scopus 로고    scopus 로고
    • BglBrick vectors and datasheets: A synthetic biology platform for gene expression
    • 1:CAS:528:DC%2BC3MXhs1OqtbnI
    • Lee TS, Krupa RA, Zhang F, Hajimorad M, Holtz WJ, Prasad N, et al. BglBrick vectors and datasheets: A synthetic biology platform for gene expression. J Biol Eng. 2011;5(1):12.
    • (2011) J Biol Eng , vol.5 , Issue.1 , pp. 12
    • Lee, T.S.1    Krupa, R.A.2    Zhang, F.3    Hajimorad, M.4    Holtz, W.J.5    Prasad, N.6
  • 36
    • 15244344474 scopus 로고    scopus 로고
    • Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8
    • 1:CAS:528:DC%2BD2MXislOnu7Y%3D
    • Handa N, Terada T, Doi-Katayama Y, Hirota H, Tame JRH, Park S-Y, et al. Crystal structure of a novel polyisoprenoid-binding protein from Thermus thermophilus HB8. Protein Sci. 2005;14(4):1004-10.
    • (2005) Protein Sci , vol.14 , Issue.4 , pp. 1004-1010
    • Handa, N.1    Terada, T.2    Doi-Katayama, Y.3    Hirota, H.4    Tame, J.R.H.5    Park, S.-Y.6
  • 37
    • 77950464112 scopus 로고    scopus 로고
    • Helicobacter pylori acidic stress response factor HP1286 is a YceI homolog with new binding specificity
    • 1:CAS:528:DC%2BC3cXkvV2ju7s%3D
    • Sisinni L, Cendron L, Favaro G, Zanotti G. Helicobacter pylori acidic stress response factor HP1286 is a YceI homolog with new binding specificity. FEBS J. 2010;277(8):1896-905.
    • (2010) FEBS J , vol.277 , Issue.8 , pp. 1896-1905
    • Sisinni, L.1    Cendron, L.2    Favaro, G.3    Zanotti, G.4
  • 38
    • 0036062240 scopus 로고    scopus 로고
    • PH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli
    • 1:CAS:528:DC%2BD38XlsVGntrk%3D
    • Stancik LM, Stancik DM, Schmidt B. pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli. J Bacteriol. 2002;184(15):4246-58.
    • (2002) J Bacteriol , vol.184 , Issue.15 , pp. 4246-4258
    • Stancik, L.M.1    Stancik, D.M.2    Schmidt, B.3
  • 39
    • 84944748902 scopus 로고    scopus 로고
    • Trade-offs in improving biofuel tolerance using combinations of efflux pumps
    • Turner WJ, Dunlop MJ. Trade-offs in improving biofuel tolerance using combinations of efflux pumps. ACS Synth Biol. 2014. doi: 10.1021/sb500307w.
    • (2014) ACS Synth Biol
    • Turner, W.J.1    Dunlop, M.J.2
  • 40
    • 41949101593 scopus 로고    scopus 로고
    • Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism
    • 1:CAS:528:DC%2BD1cXkslyhtL0%3D
    • Wargo MJ, Szwergold BS, Hogan DA. Identification of two gene clusters and a transcriptional regulator required for Pseudomonas aeruginosa glycine betaine catabolism. J Bacteriol. 2008;190(8):2690-9.
    • (2008) J Bacteriol , vol.190 , Issue.8 , pp. 2690-2699
    • Wargo, M.J.1    Szwergold, B.S.2    Hogan, D.A.3


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