-
1
-
-
0024977414
-
Five intermediate complexes in transcription initiation by RNA polymerase II
-
Buratowski,S., Hahn,S., Guarente,L. and Sharp,P.A. (1989) Five intermediate complexes in transcription initiation by RNA polymerase II. Cell, 56, 549-561.
-
(1989)
Cell
, vol.56
, pp. 549-561
-
-
Buratowski, S.1
Hahn, S.2
Guarente, L.3
Sharp, P.A.4
-
2
-
-
0029892282
-
Transcription: Basal factors and activation
-
Ranish,J.A. and Hahn,S. (1996) Transcription: basal factors and activation. Curr. Opin. Genet. Dev., 6, 151-158.
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 151-158
-
-
Ranish, J.A.1
Hahn, S.2
-
3
-
-
84888130540
-
Structural insights into transcription initiation by RNA polymerase II
-
Grunberg,S. and Hahn,S. (2013) Structural insights into transcription initiation by RNA polymerase II. Trends Biochem. Sci., 38, 603-611.
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 603-611
-
-
Grunberg, S.1
Hahn, S.2
-
4
-
-
84858165145
-
Genome-wide structure and organization of eukaryotic pre-initiation complexes
-
Rhee,H.S. and Pugh,B.F. (2012) Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature, 483, 295-301.
-
(2012)
Nature
, vol.483
, pp. 295-301
-
-
Rhee, H.S.1
Pugh, B.F.2
-
5
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu,Z., Wei,W., Gagneur,J., Perocchi,F., Clauder-Munster,S., Camblong,J., Guffanti,E., Stutz,F., Huber,W. and Steinmetz,L.M. (2009) Bidirectional promoters generate pervasive transcription in yeast. Nature, 457, 1033-1037.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Munster, S.5
Camblong, J.6
Guffanti, E.7
Stutz, F.8
Huber, W.9
Steinmetz, L.M.10
-
6
-
-
84902186552
-
Subunit architecture and functional modular rearrangements of the transcriptional mediator complex
-
Tsai,K.L., Tomomori-Sato,C., Sato,S., Conaway,R.C., Conaway,J.W. and Asturias,F.J. (2014) Subunit architecture and functional modular rearrangements of the transcriptional mediator complex. Cell, 157, 1430-1444.
-
(2014)
Cell
, vol.157
, pp. 1430-1444
-
-
Tsai, K.L.1
Tomomori-Sato, C.2
Sato, S.3
Conaway, R.C.4
Conaway, J.W.5
Asturias, F.J.6
-
7
-
-
84903816704
-
Redefining the modular organization of the core Mediator complex
-
Wang,X., Sun,Q., Ding,Z., Ji,J., Wang,J., Kong,X., Yang,J. and Cai,G. (2014) Redefining the modular organization of the core Mediator complex. Cell Res., 24, 796-808.
-
(2014)
Cell Res.
, vol.24
, pp. 796-808
-
-
Wang, X.1
Sun, Q.2
Ding, Z.3
Ji, J.4
Wang, J.5
Kong, X.6
Yang, J.7
Cai, G.8
-
8
-
-
6044249068
-
A high resolution protein interaction map of the yeast Mediator complex
-
Guglielmi,B., van Berkum,N.L., Klapholz,B., Bijma,T., Boube,M., Boschiero,C., Bourbon,H.M., Holstege,F.C. and Werner,M. (2004) A high resolution protein interaction map of the yeast Mediator complex. Nucleic Acids Res., 32, 5379-5391.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5379-5391
-
-
Guglielmi, B.1
Van Berkum, N.L.2
Klapholz, B.3
Bijma, T.4
Boube, M.5
Boschiero, C.6
Bourbon, H.M.7
Holstege, F.C.8
Werner, M.9
-
9
-
-
77953713807
-
Preparation and topology of the Mediator middle module
-
Koschubs,T., Lorenzen,K., Baumli,S., Sandstrom,S., Heck,A.J. and Cramer,P. (2010) Preparation and topology of the Mediator middle module. Nucleic Acids Res., 38, 3186-3195.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 3186-3195
-
-
Koschubs, T.1
Lorenzen, K.2
Baumli, S.3
Sandstrom, S.4
Heck, A.J.5
Cramer, P.6
-
10
-
-
84871456902
-
Structure of the Mediator head module
-
Lariviere,L., Plaschka,C., Seizl,M., Wenzeck,L., Kurth,F. and Cramer,P. (2012) Structure of the Mediator head module. Nature, 492, 448-451.
-
(2012)
Nature
, vol.492
, pp. 448-451
-
-
Lariviere, L.1
Plaschka, C.2
Seizl, M.3
Wenzeck, L.4
Kurth, F.5
Cramer, P.6
-
11
-
-
84868094446
-
Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II
-
Robinson,P.J., Bushnell,D.A., Trnka,M.J., Burlingame,A.L. and Kornberg,R.D. (2012) Structure of the Mediator Head module bound to the carboxy-terminal domain of RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 109, 17931-17935.
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 17931-17935
-
-
Robinson, P.J.1
Bushnell, D.A.2
Trnka, M.J.3
Burlingame, A.L.4
Kornberg, R.D.5
-
12
-
-
18844451820
-
Mediator and the mechanism of transcriptional activation
-
Kornberg,R.D. (2005) Mediator and the mechanism of transcriptional activation. Trends Biochem. Sci., 30, 235-239.
-
(2005)
Trends Biochem. Sci.
, vol.30
, pp. 235-239
-
-
Kornberg, R.D.1
-
13
-
-
80455164576
-
Control of gene transcription by Mediator in chromatin
-
Ries,D. and Meisterernst,M. (2011) Control of gene transcription by Mediator in chromatin. Semin. Cell Dev. Biol., 22, 735-740.
-
(2011)
Semin. Cell Dev. Biol.
, vol.22
, pp. 735-740
-
-
Ries, D.1
Meisterernst, M.2
-
14
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege,F.C., Jennings,E.G., Wyrick,J.J., Lee,T.I., Hengartner,C.J., Green,M.R., Golub,T.R., Lander,E.S. and Young,R.A. (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell, 95, 717-728.
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
Golub, T.R.7
Lander, E.S.8
Young, R.A.9
-
15
-
-
84902073419
-
Kin28 regulates the transient association of Mediator with core promoters
-
Jeronimo,C. and Robert,F. (2014) Kin28 regulates the transient association of Mediator with core promoters. Nat. Struct. Mol. Biol., 21, 449-455.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 449-455
-
-
Jeronimo, C.1
Robert, F.2
-
16
-
-
84890023330
-
Mediator is an intrinsic component of the basal RNA polymerase II machinery in vivo
-
Lacombe,T., Poh,S.L., Barbey,R. and Kuras,L. (2013) Mediator is an intrinsic component of the basal RNA polymerase II machinery in vivo. Nucleic Acids Res., 41, 9651-9662.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 9651-9662
-
-
Lacombe, T.1
Poh, S.L.2
Barbey, R.3
Kuras, L.4
-
17
-
-
84920053939
-
Genome-wide association of mediator and RNA polymerase II in wild-type and mediator mutant yeast
-
Paul,E., Zhu,Z.I., Landsman,D. and Morse,R.H. (2015) Genome-wide association of mediator and RNA polymerase II in wild-type and mediator mutant yeast. Mol. Cell. Biol., 35, 331-342.
-
(2015)
Mol. Cell. Biol.
, vol.35
, pp. 331-342
-
-
Paul, E.1
Zhu, Z.I.2
Landsman, D.3
Morse, R.H.4
-
18
-
-
0029076822
-
General requirement for RNA polymerase II holoenzymes in vivo
-
Thompson,C.M. and Young,R.A. (1995) General requirement for RNA polymerase II holoenzymes in vivo. Proc. Natl. Acad. Sci. U.S.A., 92, 4587-4590.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 4587-4590
-
-
Thompson, C.M.1
Young, R.A.2
-
19
-
-
33646023157
-
Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA
-
Andrau,J.C., van de Pasch,L., Lijnzaad,P., Bijma,T., Koerkamp,M.G., van de Peppel,J., Werner,M. and Holstege,F.C. (2006) Genome-wide location of the coactivator mediator: Binding without activation and transient Cdk8 interaction on DNA. Mol. Cell, 22, 179-192.
-
(2006)
Mol. Cell
, vol.22
, pp. 179-192
-
-
Andrau, J.C.1
Van De Pasch, L.2
Lijnzaad, P.3
Bijma, T.4
Koerkamp, M.G.5
Van De Peppel, J.6
Werner, M.7
Holstege, F.C.8
-
20
-
-
33646075157
-
Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions
-
Zhu,X., Wiren,M., Sinha,I., Rasmussen,N.N., Linder,T., Holmberg,S., Ekwall,K. and Gustafsson,C.M. (2006) Genome-wide occupancy profile of mediator and the Srb8-11 module reveals interactions with coding regions. Mol Cell, 22, 169-178.
-
(2006)
Mol Cell
, vol.22
, pp. 169-178
-
-
Zhu, X.1
Wiren, M.2
Sinha, I.3
Rasmussen, N.N.4
Linder, T.5
Holmberg, S.6
Ekwall, K.7
Gustafsson, C.M.8
-
21
-
-
0004788326
-
Mammalian mediator of transcriptional regulation and its possible role as an end-point of signal transduction pathways
-
Jiang,Y.W., Veschambre,P., Erdjument-Bromage,H., Tempst,P., Conaway,J.W., Conaway,R.C. and Kornberg,R.D. (1998) Mammalian mediator of transcriptional regulation and its possible role as an end-point of signal transduction pathways. Proc. Natl. Acad. Sci. U.S.A., 95, 8538-8543.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A.
, vol.95
, pp. 8538-8543
-
-
Jiang, Y.W.1
Veschambre, P.2
Erdjument-Bromage, H.3
Tempst, P.4
Conaway, J.W.5
Conaway, R.C.6
Kornberg, R.D.7
-
22
-
-
0028282551
-
A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II
-
Kim,Y.J., Bjorklund,S., Li,Y., Sayre,M.H. and Kornberg,R.D. (1994) A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell, 77, 599-608.
-
(1994)
Cell
, vol.77
, pp. 599-608
-
-
Kim, Y.J.1
Bjorklund, S.2
Li, Y.3
Sayre, M.H.4
Kornberg, R.D.5
-
23
-
-
77949266564
-
Mediator head module structure and functional interactions
-
Cai,G., Imasaki,T., Yamada,K., Cardelli,F., Takagi,Y. and Asturias,F.J. (2010) Mediator head module structure and functional interactions. Nat. Struct. Mol. Biol., 17, 273-279.
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 273-279
-
-
Cai, G.1
Imasaki, T.2
Yamada, K.3
Cardelli, F.4
Takagi, Y.5
Asturias, F.J.6
-
24
-
-
0037099312
-
TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA
-
Johnson,K.M., Wang,J., Smallwood,A., Arayata,C. and Carey,M. (2002) TFIID and human mediator coactivator complexes assemble cooperatively on promoter DNA. Genes Dev., 16, 1852-1863.
-
(2002)
Genes Dev.
, vol.16
, pp. 1852-1863
-
-
Johnson, K.M.1
Wang, J.2
Smallwood, A.3
Arayata, C.4
Carey, M.5
-
25
-
-
33749514827
-
Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20
-
Lariviere,L., Geiger,S., Hoeppner,S., Rother,S., Strasser,K. and Cramer,P. (2006) Structure and TBP binding of the Mediator head subcomplex Med8-Med18-Med20. Nat. Struct. Mol. Biol., 13, 895-901.
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 895-901
-
-
Lariviere, L.1
Geiger, S.2
Hoeppner, S.3
Rother, S.4
Strasser, K.5
Cramer, P.6
-
26
-
-
79959939884
-
Human mediator subunit MED26 functions as a docking site for transcription elongation factors
-
Takahashi,H., Parmely,T.J., Sato,S., Tomomori-Sato,C., Banks,C.A., Kong,S.E., Szutorisz,H., Swanson,S.K., Martin-Brown,S., Washburn,M.P. et al. (2011) Human mediator subunit MED26 functions as a docking site for transcription elongation factors. Cell, 146, 92-104.
-
(2011)
Cell
, vol.146
, pp. 92-104
-
-
Takahashi, H.1
Parmely, T.J.2
Sato, S.3
Tomomori-Sato, C.4
Banks, C.A.5
Kong, S.E.6
Szutorisz, H.7
Swanson, S.K.8
Martin-Brown, S.9
Washburn, M.P.10
-
27
-
-
48349095490
-
Mediator-dependent recruitment of TFIIH modules in preinitiation complex
-
Esnault,C., Ghavi-Helm,Y., Brun,S., Soutourina,J., Van Berkum,N., Boschiero,C., Holstege,F. and Werner,M. (2008) Mediator-dependent recruitment of TFIIH modules in preinitiation complex. Mol. Cell, 31, 337-346.
-
(2008)
Mol. Cell
, vol.31
, pp. 337-346
-
-
Esnault, C.1
Ghavi-Helm, Y.2
Brun, S.3
Soutourina, J.4
Van Berkum, N.5
Boschiero, C.6
Holstege, F.7
Werner, M.8
-
28
-
-
79952803747
-
Direct interaction of RNA polymerase II and mediator required for transcription in vivo
-
Soutourina,J., Wydau,S., Ambroise,Y., Boschiero,C. and Werner,M. (2011) Direct interaction of RNA polymerase II and mediator required for transcription in vivo. Science, 331, 1451-1454.
-
(2011)
Science
, vol.331
, pp. 1451-1454
-
-
Soutourina, J.1
Wydau, S.2
Ambroise, Y.3
Boschiero, C.4
Werner, M.5
-
29
-
-
47249134314
-
Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex
-
Bourbon,H.M. (2008) Comparative genomics supports a deep evolutionary origin for the large, four-module transcriptional mediator complex. Nucleic Acids Res., 36, 3993-4008.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3993-4008
-
-
Bourbon, H.M.1
-
30
-
-
34047153922
-
A recurrent mutation in MED12 leading to R961W causes Opitz-Kaveggia syndrome
-
Risheg,H., Graham,J.M. Jr, Clark,R.D., Rogers,R.C., Opitz,J.M., Moeschler,J.B., Peiffer,A.P., May,M., Joseph,S.M., Jones,J.R. et al. (2007) A recurrent mutation in MED12 leading to R961W causes Opitz-Kaveggia syndrome. Nat. Genet., 39, 451-453.
-
(2007)
Nat. Genet.
, vol.39
, pp. 451-453
-
-
Risheg, H.1
Graham, J.M.2
Clark, R.D.3
Rogers, R.C.4
Opitz, J.M.5
Moeschler, J.B.6
Peiffer, A.P.7
May, M.8
Joseph, S.M.9
Jones, J.R.10
-
31
-
-
34447342555
-
The original Lujan syndrome family has a novel missense mutation (p.N1007S) in the MED12 gene
-
Schwartz,C.E., Tarpey,P.S., Lubs,H.A., Verloes,A., May,M.M., Risheg,H., Friez,M.J., Futreal,P.A., Edkins,S., Teague,J. et al. (2007) The original Lujan syndrome family has a novel missense mutation (p.N1007S) in the MED12 gene. J. Med. Genet., 44, 472-477.
-
(2007)
J. Med. Genet.
, vol.44
, pp. 472-477
-
-
Schwartz, C.E.1
Tarpey, P.S.2
Lubs, H.A.3
Verloes, A.4
May, M.M.5
Risheg, H.6
Friez, M.J.7
Futreal, P.A.8
Edkins, S.9
Teague, J.10
-
32
-
-
80052170163
-
MED23 mutation links intellectual disability to dysregulation of immediate early gene expression
-
Hashimoto,S., Boissel,S., Zarhrate,M., Rio,M., Munnich,A., Egly,J.M. and Colleaux,L. (2011) MED23 mutation links intellectual disability to dysregulation of immediate early gene expression. Science, 333, 1161-1163.
-
(2011)
Science
, vol.333
, pp. 1161-1163
-
-
Hashimoto, S.1
Boissel, S.2
Zarhrate, M.3
Rio, M.4
Munnich, A.5
Egly, J.M.6
Colleaux, L.7
-
33
-
-
52949111487
-
CDK8 is a colorectal cancer oncogene that regulates beta-catenin activity
-
Firestein,R., Bass,A.J., Kim,S.Y., Dunn,I.F., Silver,S.J., Guney,I., Freed,E., Ligon,A.H., Vena,N., Ogino,S. et al. (2008) CDK8 is a colorectal cancer oncogene that regulates beta-catenin activity. Nature, 455, 547-551.
-
(2008)
Nature
, vol.455
, pp. 547-551
-
-
Firestein, R.1
Bass, A.J.2
Kim, S.Y.3
Dunn, I.F.4
Silver, S.J.5
Guney, I.6
Freed, E.7
Ligon, A.H.8
Vena, N.9
Ogino, S.10
-
34
-
-
68549083479
-
Down-regulation of the transcriptional mediator subunit Med1 contributes to the loss of expression of metastasis-associated dapk1 in human cancers and cancer cells
-
Gade,P., Singh,A.K., Roy,S.K., Reddy,S.P. and Kalvakolanu,D.V. (2009) Down-regulation of the transcriptional mediator subunit Med1 contributes to the loss of expression of metastasis-associated dapk1 in human cancers and cancer cells. Int. J. Cancer, 125, 1566-1574.
-
(2009)
Int. J. Cancer
, vol.125
, pp. 1566-1574
-
-
Gade, P.1
Singh, A.K.2
Roy, S.K.3
Reddy, S.P.4
Kalvakolanu, D.V.5
-
35
-
-
80053309555
-
MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer
-
Kuuselo,R., Savinainen,K., Sandstrom,S., Autio,R. and Kallioniemi,A. (2011) MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer. Int. J. Cancer., 129, 2553-2565.
-
(2011)
Int. J. Cancer.
, vol.129
, pp. 2553-2565
-
-
Kuuselo, R.1
Savinainen, K.2
Sandstrom, S.3
Autio, R.4
Kallioniemi, A.5
-
36
-
-
79959601916
-
Lentivirus-mediated inhibition of Med19 suppresses growth of breast cancer cells in vitro
-
Li,L.H., He,J., Hua,D., Guo,Z.J. and Gao,Q. (2010) Lentivirus-mediated inhibition of Med19 suppresses growth of breast cancer cells in vitro. Cancer Chemother. Pharmacol., 68, 207-215.
-
(2010)
Cancer Chemother. Pharmacol.
, vol.68
, pp. 207-215
-
-
Li, L.H.1
He, J.2
Hua, D.3
Guo, Z.J.4
Gao, Q.5
-
37
-
-
34249327738
-
A coregulatory role for the mediator complex in prostate cancer cell proliferation and gene expression
-
Vijayvargia,R., May,M.S. and Fondell,J.D. (2007) A coregulatory role for the mediator complex in prostate cancer cell proliferation and gene expression. Cancer Res., 67, 4034-4041.
-
(2007)
Cancer Res.
, vol.67
, pp. 4034-4041
-
-
Vijayvargia, R.1
May, M.S.2
Fondell, J.D.3
-
38
-
-
21244466640
-
MED1/TRAP220 exists predominantly in a TRAP/ Mediator subpopulation enriched in RNA polymerase II and is required for ER-mediated transcription
-
Zhang,X., Krutchinsky,A., Fukuda,A., Chen,W., Yamamura,S., Chait,B.T. and Roeder,R.G. (2005) MED1/TRAP220 exists predominantly in a TRAP/ Mediator subpopulation enriched in RNA polymerase II and is required for ER-mediated transcription. Mol. Cell, 19, 89-100.
-
(2005)
Mol. Cell
, vol.19
, pp. 89-100
-
-
Zhang, X.1
Krutchinsky, A.2
Fukuda, A.3
Chen, W.4
Yamamura, S.5
Chait, B.T.6
Roeder, R.G.7
-
39
-
-
0027253864
-
A multisubunit complex associated with the RNA polymerase II CTD and TATA-binding protein in yeast
-
Thompson,C.M., Koleske,A.J., Chao,D.M. and Young,R.A. (1993) A multisubunit complex associated with the RNA polymerase II CTD and TATA-binding protein in yeast. Cell, 73, 1361-1375.
-
(1993)
Cell
, vol.73
, pp. 1361-1375
-
-
Thompson, C.M.1
Koleske, A.J.2
Chao, D.M.3
Young, R.A.4
-
40
-
-
33748753071
-
The classical srb4-138 mutant allele causes dissociation of yeast Mediator
-
Linder,T., Zhu,X., Baraznenok,V. and Gustafsson,C.M. (2006) The classical srb4-138 mutant allele causes dissociation of yeast Mediator. Biochem. Biophys. Res. Commun., 349, 948-953.
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.349
, pp. 948-953
-
-
Linder, T.1
Zhu, X.2
Baraznenok, V.3
Gustafsson, C.M.4
-
41
-
-
33746408090
-
Head module control of mediator interactions
-
Takagi,Y., Calero,G., Komori,H., Brown,J.A., Ehrensberger,A.H., Hudmon,A., Asturias,F. and Kornberg,R.D. (2006) Head module control of mediator interactions. Mol. Cell, 23, 355-364.
-
(2006)
Mol. Cell
, vol.23
, pp. 355-364
-
-
Takagi, Y.1
Calero, G.2
Komori, H.3
Brown, J.A.4
Ehrensberger, A.H.5
Hudmon, A.6
Asturias, F.7
Kornberg, R.D.8
-
42
-
-
33644852483
-
Mediator as a general transcription factor
-
Takagi,Y. and Kornberg,R.D. (2006) Mediator as a general transcription factor. J. Biol. Chem., 281, 80-89.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 80-89
-
-
Takagi, Y.1
Kornberg, R.D.2
-
43
-
-
78249244149
-
Infantile cerebral and cerebellar atrophy is associated with a mutation in the MED17 subunit of the transcription preinitiation mediator complex
-
Kaufmann,R., Straussberg,R., Mandel,H., Fattal-Valevski,A., Ben-Zeev,B., Naamati,A., Shaag,A., Zenvirt,S., Konen,O., Mimouni-Bloch,A. et al. (2010) Infantile cerebral and cerebellar atrophy is associated with a mutation in the MED17 subunit of the transcription preinitiation mediator complex. Am. J. Hum. Genet., 87, 667-670.
-
(2010)
Am. J. Hum. Genet.
, vol.87
, pp. 667-670
-
-
Kaufmann, R.1
Straussberg, R.2
Mandel, H.3
Fattal-Valevski, A.4
Ben-Zeev, B.5
Naamati, A.6
Shaag, A.7
Zenvirt, S.8
Konen, O.9
Mimouni-Bloch, A.10
-
44
-
-
47549116548
-
Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription
-
Ghavi-Helm,Y., Michaut,M., Acker,J., Aude,J.C., Thuriaux,P., Werner,M. and Soutourina,J. (2008) Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription. Genes Dev., 22, 1934-1947.
-
(2008)
Genes Dev.
, vol.22
, pp. 1934-1947
-
-
Ghavi-Helm, Y.1
Michaut, M.2
Acker, J.3
Aude, J.C.4
Thuriaux, P.5
Werner, M.6
Soutourina, J.7
-
45
-
-
84889067216
-
Mediator links transcription and DNA repair by facilitating Rad2/XPG recruitment
-
Eyboulet,F., Cibot,C., Eychenne,T., Neil,H., Alibert,O., Werner,M. and Soutourina,J. (2013) Mediator links transcription and DNA repair by facilitating Rad2/XPG recruitment. Genes Dev., 27, 2549-2562.
-
(2013)
Genes Dev.
, vol.27
, pp. 2549-2562
-
-
Eyboulet, F.1
Cibot, C.2
Eychenne, T.3
Neil, H.4
Alibert, O.5
Werner, M.6
Soutourina, J.7
-
46
-
-
33745469367
-
Rsc4 connects the chromatin remodeler RSC to RNA polymerases
-
Soutourina,J., Bordas-Le Floch,V., Gendrel,G., Flores,A., Ducrot,C., Dumay-Odelot,H., Soularue,P., Navarro,F., Cairns,B.R., Lefebvre,O. et al. (2006) Rsc4 connects the chromatin remodeler RSC to RNA polymerases. Mol. Cell. Biol., 26, 4920-4933.
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 4920-4933
-
-
Soutourina, J.1
Bordas-Le Floch, V.2
Gendrel, G.3
Flores, A.4
Ducrot, C.5
Dumay-Odelot, H.6
Soularue, P.7
Navarro, F.8
Cairns, B.R.9
Lefebvre, O.10
-
47
-
-
64049097892
-
Mediator structural conservation and implications for the regulation mechanism
-
Cai,G., Imasaki,T., Takagi,Y. and Asturias,F.J. (2009) Mediator structural conservation and implications for the regulation mechanism. Structure, 17, 559-567.
-
(2009)
Structure
, vol.17
, pp. 559-567
-
-
Cai, G.1
Imasaki, T.2
Takagi, Y.3
Asturias, F.J.4
-
48
-
-
0025362399
-
A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae
-
Schmitt,M.E., Brown,T.A. and Trumpower,B.L. (1990) A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res., 18, 3091-3092.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3091-3092
-
-
Schmitt, M.E.1
Brown, T.A.2
Trumpower, B.L.3
-
49
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead,B., Trapnell,C., Pop,M. and Salzberg,S.L. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
-
(2009)
Genome Biol.
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
50
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang,Y., Liu,T., Meyer,C.A., Eeckhoute,J., Johnson,D.S.,Bernstein,B.E., Nusbaum,C., Myers,R.M., Brown,M., Li,W. et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol., 9, R137.
-
(2008)
Genome Biol.
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
51
-
-
77955183656
-
PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci
-
Salmon-Divon,M., Dvinge,H., Tammoja,K. and Bertone,P. (2010) PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci. BMC Bioinformatics, 11, 415.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 415
-
-
Salmon-Divon, M.1
Dvinge, H.2
Tammoja, K.3
Bertone, P.4
-
52
-
-
70449434105
-
BayesPeak: Bayesian analysis of ChIP-seq data
-
Spyrou,C., Stark,R., Lynch,A.G. and Tavare,S. (2009) BayesPeak: Bayesian analysis of ChIP-seq data. BMC Bioinformatics, 10, 299.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 299
-
-
Spyrou, C.1
Stark, R.2
Lynch, A.G.3
Tavare, S.4
-
53
-
-
84878270249
-
Gene expression is circular: Factors for mRNA degradation also foster mRNA synthesis
-
Haimovich,G., Medina,D.A., Causse,S.Z., Garber,M., Millan-Zambrano,G., Barkai,O., Chavez,S., Perez-Ortin,J.E., Darzacq,X. and Choder,M. (2013) Gene expression is circular: factors for mRNA degradation also foster mRNA synthesis. Cell, 153, 1000-1011.
-
(2013)
Cell
, vol.153
, pp. 1000-1011
-
-
Haimovich, G.1
Medina, D.A.2
Causse, S.Z.3
Garber, M.4
Millan-Zambrano, G.5
Barkai, O.6
Chavez, S.7
Perez-Ortin, J.E.8
Darzacq, X.9
Choder, M.10
-
54
-
-
84863540819
-
Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation
-
Sun,M., Schwalb,B., Schulz,D., Pirkl,N., Etzold,S., Lariviere,L., Maier,K.C., Seizl,M., Tresch,A. and Cramer,P. (2012) Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation. Genome Res., 22, 1350-1359.
-
(2012)
Genome Res.
, vol.22
, pp. 1350-1359
-
-
Sun, M.1
Schwalb, B.2
Schulz, D.3
Pirkl, N.4
Etzold, S.5
Lariviere, L.6
Maier, K.C.7
Seizl, M.8
Tresch, A.9
Cramer, P.10
-
55
-
-
84907159518
-
The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription
-
Bonnet,J., Wang,C.Y., Baptista,T., Vincent,S.D., Hsiao,W.C., Stierle,M., Kao,C.F., Tora,L. and Devys,D. (2014) The SAGA coactivator complex acts on the whole transcribed genome and is required for RNA polymerase II transcription. Genes Dev., 28, 1999-2012.
-
(2014)
Genes Dev.
, vol.28
, pp. 1999-2012
-
-
Bonnet, J.1
Wang, C.Y.2
Baptista, T.3
Vincent, S.D.4
Hsiao, W.C.5
Stierle, M.6
Kao, C.F.7
Tora, L.8
Devys, D.9
-
56
-
-
84901235459
-
TFIIH Phosphorylation of the Pol II CTD Stimulates Mediator Dissociation from the Preinitiation Complex and Promoter Escape
-
Wong,K.H., Jin,Y. and Struhl,K. (2014) TFIIH Phosphorylation of the Pol II CTD Stimulates Mediator Dissociation from the Preinitiation Complex and Promoter Escape. Mol. Cell, 54, 601-612.
-
(2014)
Mol. Cell
, vol.54
, pp. 601-612
-
-
Wong, K.H.1
Jin, Y.2
Struhl, K.3
-
57
-
-
84861964081
-
Systematic evaluation of factors influencing ChIP-seq fidelity
-
Chen,Y., Negre,N., Li,Q., Mieczkowska,J.O., Slattery,M., Liu,T., Zhang,Y., Kim,T.K., He,H.H., Zieba,J. et al. (2012) Systematic evaluation of factors influencing ChIP-seq fidelity. Nat. Methods, 9, 609-614.
-
(2012)
Nat. Methods
, vol.9
, pp. 609-614
-
-
Chen, Y.1
Negre, N.2
Li, Q.3
Mieczkowska, J.O.4
Slattery, M.5
Liu, T.6
Zhang, Y.7
Kim, T.K.8
He, H.H.9
Zieba, J.10
-
58
-
-
84891945420
-
Widespread misinterpretable ChIP-seq bias in yeast
-
Park,D., Lee,Y., Bhupindersingh,G. and Iyer,V.R. (2013) Widespread misinterpretable ChIP-seq bias in yeast. PLoS One, 8, e83506.
-
(2013)
PLoS One
, vol.8
-
-
Park, D.1
Lee, Y.2
Bhupindersingh, G.3
Iyer, V.R.4
-
59
-
-
84887478181
-
Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
-
Teytelman,L., Thurtle,D.M., Rine,J. and van Oudenaarden,A. (2013) Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins. Proc. Natl. Acad. Sci. U.S.A., 110, 18602-18607.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 18602-18607
-
-
Teytelman, L.1
Thurtle, D.M.2
Rine, J.3
Van Oudenaarden, A.4
-
60
-
-
0842347413
-
Two cyclin-dependent kinases promote RNA polymerase II transcription and formation of the scaffold complex
-
Liu,Y., Kung,C., Fishburn,J., Ansari,A.Z., Shokat,K.M. and Hahn,S. (2004) Two cyclin-dependent kinases promote RNA polymerase II transcription and formation of the scaffold complex. Mol. Cell. Biol., 24, 1721-1735.
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 1721-1735
-
-
Liu, Y.1
Kung, C.2
Fishburn, J.3
Ansari, A.Z.4
Shokat, K.M.5
Hahn, S.6
-
61
-
-
3142687052
-
Mutual targeting of mediator and the TFIIH kinase Kin28
-
Guidi,B.W., Bjornsdottir,G., Hopkins,D.C., Lacomis,L., Erdjument-Bromage,H., Tempst,P. and Myers,L.C. (2004) Mutual targeting of mediator and the TFIIH kinase Kin28. J. Biol. Chem., 279, 29114-29120.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 29114-29120
-
-
Guidi, B.W.1
Bjornsdottir, G.2
Hopkins, D.C.3
Lacomis, L.4
Erdjument-Bromage, H.5
Tempst, P.6
Myers, L.C.7
-
62
-
-
0033542436
-
Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme
-
Kuras,L. and Struhl,K. (1999) Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature, 399, 609-613.
-
(1999)
Nature
, vol.399
, pp. 609-613
-
-
Kuras, L.1
Struhl, K.2
-
63
-
-
0033542484
-
Enhancement of TBP binding by activators and general transcription factors
-
Li,X.Y., Virbasius,A., Zhu,X. and Green,M.R. (1999) Enhancement of TBP binding by activators and general transcription factors. Nature, 399, 605-609.
-
(1999)
Nature
, vol.399
, pp. 605-609
-
-
Li, X.Y.1
Virbasius, A.2
Zhu, X.3
Green, M.R.4
|