-
1
-
-
0036791576
-
Mot1p is essential for TBP recruitment to selected promoters during in vivo gene activation
-
Andrau J.C., Van Oevelen C.J., Van Teeffelen H.A., Weil P.A., Holstege F.C., and Timmers H.T. Mot1p is essential for TBP recruitment to selected promoters during in vivo gene activation. EMBO J. 21 (2002) 5173-5183
-
(2002)
EMBO J.
, vol.21
, pp. 5173-5183
-
-
Andrau, J.C.1
Van Oevelen, C.J.2
Van Teeffelen, H.A.3
Weil, P.A.4
Holstege, F.C.5
Timmers, H.T.6
-
2
-
-
0035883746
-
The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II
-
Bhoite L.T., Yu Y., and Stillman D.J. The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II. Genes Dev. 15 (2001) 2457-2469
-
(2001)
Genes Dev.
, vol.15
, pp. 2457-2469
-
-
Bhoite, L.T.1
Yu, Y.2
Stillman, D.J.3
-
3
-
-
1842524183
-
The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2
-
Bird A.J., Blankman E., Stillman D.J., Eide D.J., and Winge D.R. The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2. EMBO J. 23 (2004) 1123-1132
-
(2004)
EMBO J.
, vol.23
, pp. 1123-1132
-
-
Bird, A.J.1
Blankman, E.2
Stillman, D.J.3
Eide, D.J.4
Winge, D.R.5
-
4
-
-
0037113938
-
A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast
-
Borggrefe T., Davis R., Erdjument-Bromage H., Tempst P., and Kornberg R.D. A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast. J. Biol. Chem. 277 (2002) 44202-44207
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 44202-44207
-
-
Borggrefe, T.1
Davis, R.2
Erdjument-Bromage, H.3
Tempst, P.4
Kornberg, R.D.5
-
5
-
-
0037716755
-
Independent recruitment in vivo by Gal4 of two complexes required for transcription
-
Bryant G.O., and Ptashne M. Independent recruitment in vivo by Gal4 of two complexes required for transcription. Mol. Cell 11 (2003) 1301-1309
-
(2003)
Mol. Cell
, vol.11
, pp. 1301-1309
-
-
Bryant, G.O.1
Ptashne, M.2
-
6
-
-
3042760385
-
The Ras/PKA signaling pathway directly targets the Srb9 protein, a component of the general RNA polymerase II transcription apparatus
-
Chang Y.W., Howard S.C., and Herman P.K. The Ras/PKA signaling pathway directly targets the Srb9 protein, a component of the general RNA polymerase II transcription apparatus. Mol. Cell 15 (2004) 107-116
-
(2004)
Mol. Cell
, vol.15
, pp. 107-116
-
-
Chang, Y.W.1
Howard, S.C.2
Herman, P.K.3
-
7
-
-
0034964368
-
Cdk1 triggers association of RNA polymerase to cell cycle promoters only after recruitment of the mediator by SBF
-
Cosma M.P., Panizza S., and Nasmyth K. Cdk1 triggers association of RNA polymerase to cell cycle promoters only after recruitment of the mediator by SBF. Mol. Cell 7 (2001) 1213-1220
-
(2001)
Mol. Cell
, vol.7
, pp. 1213-1220
-
-
Cosma, M.P.1
Panizza, S.2
Nasmyth, K.3
-
8
-
-
0036671095
-
Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction
-
Davis J.A., Takagi Y., Kornberg R.D., and Asturias F.A. Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction. Mol. Cell 10 (2002) 409-415
-
(2002)
Mol. Cell
, vol.10
, pp. 409-415
-
-
Davis, J.A.1
Takagi, Y.2
Kornberg, R.D.3
Asturias, F.A.4
-
9
-
-
3743054687
-
The anatomy of a hypoxic operator in Saccharomyces cerevisiae
-
Deckert J., Torres A.M., Hwang S.M., Kastaniotis A.J., and Zitomer R.S. The anatomy of a hypoxic operator in Saccharomyces cerevisiae. Genetics 150 (1998) 1429-1441
-
(1998)
Genetics
, vol.150
, pp. 1429-1441
-
-
Deckert, J.1
Torres, A.M.2
Hwang, S.M.3
Kastaniotis, A.J.4
Zitomer, R.S.5
-
10
-
-
16544365033
-
Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo
-
Geisberg J.V., and Struhl K. Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo. Nucleic Acids Res. 32 (2004) e151
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Geisberg, J.V.1
Struhl, K.2
-
11
-
-
2942584864
-
"Sleeping beauty": quiescence in Saccharomyces cerevisiae
-
Gray J.V., Petsko G.A., Johnston G.C., Ringe D., Singer R.A., and Werner-Washburne M. "Sleeping beauty": quiescence in Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 68 (2004) 187-206
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 187-206
-
-
Gray, J.V.1
Petsko, G.A.2
Johnston, G.C.3
Ringe, D.4
Singer, R.A.5
Werner-Washburne, M.6
-
12
-
-
6044249068
-
A high resolution protein interaction map of the yeast Mediator complex
-
Guglielmi B., van Berkum N.L., Klapholz B., Bijma T., Boube M., Boschiero C., Bourbon H.M., Holstege F.C., and Werner M. A high resolution protein interaction map of the yeast Mediator complex. Nucleic Acids Res. 32 (2004) 5379-5391
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5379-5391
-
-
Guglielmi, B.1
van Berkum, N.L.2
Klapholz, B.3
Bijma, T.4
Boube, M.5
Boschiero, C.6
Bourbon, H.M.7
Holstege, F.C.8
Werner, M.9
-
13
-
-
1542618343
-
Site-specific Srb10-dependent phosphorylation of the yeast Mediator subunit Med2 regulates gene expression from the 2-microm plasmid
-
Hallberg M., Polozkov G.V., Hu G.Z., Beve J., Gustafsson C.M., Ronne H., and Bjorklund S. Site-specific Srb10-dependent phosphorylation of the yeast Mediator subunit Med2 regulates gene expression from the 2-microm plasmid. Proc. Natl. Acad. Sci. USA 101 (2004) 3370-3375
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 3370-3375
-
-
Hallberg, M.1
Polozkov, G.V.2
Hu, G.Z.3
Beve, J.4
Gustafsson, C.M.5
Ronne, H.6
Bjorklund, S.7
-
14
-
-
0141625270
-
Genome-wide location of yeast RNA polymerase III transcription machinery
-
Harismendy O., Gendrel C.G., Soularue P., Gidrol X., Sentenac A., Werner M., and Lefebvre O. Genome-wide location of yeast RNA polymerase III transcription machinery. EMBO J. 22 (2003) 4738-4747
-
(2003)
EMBO J.
, vol.22
, pp. 4738-4747
-
-
Harismendy, O.1
Gendrel, C.G.2
Soularue, P.3
Gidrol, X.4
Sentenac, A.5
Werner, M.6
Lefebvre, O.7
-
15
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege F.C., Jennings E.G., Wyrick J.J., Lee T.I., Hengartner C.J., Green M.R., Golub T.R., Lander E.S., and Young R.A. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95 (1998) 717-728
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
Golub, T.R.7
Lander, E.S.8
Young, R.A.9
-
16
-
-
0028282551
-
A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II
-
Kim Y.J., Bjorklund S., Li Y., Sayre M.H., and Kornberg R.D. A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77 (1994) 599-608
-
(1994)
Cell
, vol.77
, pp. 599-608
-
-
Kim, Y.J.1
Bjorklund, S.2
Li, Y.3
Sayre, M.H.4
Kornberg, R.D.5
-
17
-
-
0028347674
-
An RNA polymerase II holoenzyme responsive to activators
-
Koleske A.J., and Young R.A. An RNA polymerase II holoenzyme responsive to activators. Nature 368 (1994) 466-469
-
(1994)
Nature
, vol.368
, pp. 466-469
-
-
Koleske, A.J.1
Young, R.A.2
-
18
-
-
18844451820
-
Mediator and the mechanism of transcriptional activation
-
Kornberg R.D. Mediator and the mechanism of transcriptional activation. Trends Biochem. Sci. 30 (2005) 235-239
-
(2005)
Trends Biochem. Sci.
, vol.30
, pp. 235-239
-
-
Kornberg, R.D.1
-
19
-
-
0344270881
-
Association of the Mediator complex with enhancers of active genes
-
Kuras L., Borggrefe T., and Kornberg R.D. Association of the Mediator complex with enhancers of active genes. Proc. Natl. Acad. Sci. USA 100 (2003) 13887-13891
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13887-13891
-
-
Kuras, L.1
Borggrefe, T.2
Kornberg, R.D.3
-
20
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee T.I., Rinaldi N.J., Robert F., Odom D.T., Bar-Joseph Z., Gerber G.K., Hannett N.M., Harbison C.T., Thompson C.M., Simon I., et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298 (2002) 799-804
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
-
21
-
-
18944366286
-
Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator
-
Lewis B.A., Sims III R.J., Lane W.S., and Reinberg D. Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator. Mol. Cell 18 (2005) 471-481
-
(2005)
Mol. Cell
, vol.18
, pp. 471-481
-
-
Lewis, B.A.1
Sims III, R.J.2
Lane, W.S.3
Reinberg, D.4
-
22
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
Lieb J.D., Liu X., Botstein D., and Brown P.O. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28 (2001) 327-334
-
(2001)
Nat. Genet.
, vol.28
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
23
-
-
0035831475
-
Yeast nuclear extract contains two major forms of RNA polymerase II mediator complexes
-
Liu Y., Ranish J.A., Aebersold R., and Hahn S. Yeast nuclear extract contains two major forms of RNA polymerase II mediator complexes. J. Biol. Chem. 276 (2001) 7169-7175
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 7169-7175
-
-
Liu, Y.1
Ranish, J.A.2
Aebersold, R.3
Hahn, S.4
-
24
-
-
4444262632
-
Gene loops juxtapose promoters and terminators in yeast
-
O'Sullivan J.M., Tan-Wong S.M., Morillon A., Lee B., Coles J., Mellor J., and Proudfoot N.J. Gene loops juxtapose promoters and terminators in yeast. Nat. Genet. 36 (2004) 1014-1018
-
(2004)
Nat. Genet.
, vol.36
, pp. 1014-1018
-
-
O'Sullivan, J.M.1
Tan-Wong, S.M.2
Morillon, A.3
Lee, B.4
Coles, J.5
Mellor, J.6
Proudfoot, N.J.7
-
25
-
-
0036241663
-
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
-
Pokholok D.K., Hannett N.M., and Young R.A. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. Mol. Cell 9 (2002) 799-809
-
(2002)
Mol. Cell
, vol.9
, pp. 799-809
-
-
Pokholok, D.K.1
Hannett, N.M.2
Young, R.A.3
-
26
-
-
20444382737
-
Regulation of transcription: from lambda to eukaryotes
-
Ptashne M. Regulation of transcription: from lambda to eukaryotes. Trends Biochem. Sci. 30 (2005) 275-279
-
(2005)
Trends Biochem. Sci.
, vol.30
, pp. 275-279
-
-
Ptashne, M.1
-
27
-
-
0034841844
-
The tandem affinity purification (TAP) method: a general procedure of protein complex purification
-
Puig O., Caspary F., Rigaut G., Rutz B., Bouveret E., Bragado-Nilsson E., Wilm M., and Seraphin B. The tandem affinity purification (TAP) method: a general procedure of protein complex purification. Methods 24 (2001) 218-229
-
(2001)
Methods
, vol.24
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
28
-
-
17044399754
-
Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit
-
Radonjic M., Andrau J.C., Lijnzaad P., Kemmeren P., Kockelkorn T.T., van Leenen D., van Berkum N.L., and Holstege F.C. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Mol. Cell 18 (2005) 171-183
-
(2005)
Mol. Cell
, vol.18
, pp. 171-183
-
-
Radonjic, M.1
Andrau, J.C.2
Lijnzaad, P.3
Kemmeren, P.4
Kockelkorn, T.T.5
van Leenen, D.6
van Berkum, N.L.7
Holstege, F.C.8
-
29
-
-
6344270167
-
Global position and recruitment of HATs and HDACs in the yeast genome
-
Robert F., Pokholok D.K., Hannett N.M., Rinaldi N.J., Chandy M., Rolfe A., Workman J.L., Gifford D.K., and Young R.A. Global position and recruitment of HATs and HDACs in the yeast genome. Mol. Cell 16 (2004) 199-209
-
(2004)
Mol. Cell
, vol.16
, pp. 199-209
-
-
Robert, F.1
Pokholok, D.K.2
Hannett, N.M.3
Rinaldi, N.J.4
Chandy, M.5
Rolfe, A.6
Workman, J.L.7
Gifford, D.K.8
Young, R.A.9
-
30
-
-
14544280757
-
Transcriptional regulation and the role of diverse coactivators in animal cells
-
Roeder R.G. Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett. 579 (2005) 909-915
-
(2005)
FEBS Lett.
, vol.579
, pp. 909-915
-
-
Roeder, R.G.1
-
31
-
-
0037975661
-
TRAP230/ARC240 and TRAP240/ARC250 Mediator subunits are functionally conserved through evolution
-
Samuelsen C.O., Baraznenok V., Khorosjutina O., Spahr H., Kieselbach T., Holmberg S., and Gustafsson C.M. TRAP230/ARC240 and TRAP240/ARC250 Mediator subunits are functionally conserved through evolution. Proc. Natl. Acad. Sci. USA 100 (2003) 6422-6427
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6422-6427
-
-
Samuelsen, C.O.1
Baraznenok, V.2
Khorosjutina, O.3
Spahr, H.4
Kieselbach, T.5
Holmberg, S.6
Gustafsson, C.M.7
-
32
-
-
2942575993
-
A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology
-
Sato S., Tomomori-Sato C., Parmely T.J., Florens L., Zybailov B., Swanson S.K., Banks C.A., Jin J., Cai Y., Washburn M.P., et al. A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. Mol. Cell 14 (2004) 685-691
-
(2004)
Mol. Cell
, vol.14
, pp. 685-691
-
-
Sato, S.1
Tomomori-Sato, C.2
Parmely, T.J.3
Florens, L.4
Zybailov, B.5
Swanson, S.K.6
Banks, C.A.7
Jin, J.8
Cai, Y.9
Washburn, M.P.10
-
33
-
-
2342465953
-
Recent highlights of RNA-polymerase-II-mediated transcription
-
Sims III R.J., Mandal S.S., and Reinberg D. Recent highlights of RNA-polymerase-II-mediated transcription. Curr. Opin. Cell Biol. 16 (2004) 263-271
-
(2004)
Curr. Opin. Cell Biol.
, vol.16
, pp. 263-271
-
-
Sims III, R.J.1
Mandal, S.S.2
Reinberg, D.3
-
34
-
-
0032762991
-
Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
-
ter Linde J.J., Liang H., Davis R.W., Steensma H.Y., van Dijken J.P., and Pronk J.T. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. J. Bacteriol. 181 (1999) 7409-7413
-
(1999)
J. Bacteriol.
, vol.181
, pp. 7409-7413
-
-
ter Linde, J.J.1
Liang, H.2
Davis, R.W.3
Steensma, H.Y.4
van Dijken, J.P.5
Pronk, J.T.6
-
35
-
-
23744490065
-
Expression-profiling of Mediator reveals an epistatic signal-transduction pathway with antagonistic submodules and highly specific downstream targets
-
van de Peppel J., Kettelarij N., van Bakel H., Kockelkorn T.T.J.P., van Leenen D., and Holstege F.C.P. Expression-profiling of Mediator reveals an epistatic signal-transduction pathway with antagonistic submodules and highly specific downstream targets. Mol. Cell 19 (2005) 511-522
-
(2005)
Mol. Cell
, vol.19
, pp. 511-522
-
-
van de Peppel, J.1
Kettelarij, N.2
van Bakel, H.3
Kockelkorn, T.T.J.P.4
van Leenen, D.5
Holstege, F.C.P.6
-
36
-
-
14644427848
-
Mediator requirement for both recruitment and postrecruitment steps in transcription initiation
-
Wang G., Balamotis M.A., Stevens J.L., Yamaguchi Y., Handa H., and Berk A.J. Mediator requirement for both recruitment and postrecruitment steps in transcription initiation. Mol. Cell 17 (2005) 683-694
-
(2005)
Mol. Cell
, vol.17
, pp. 683-694
-
-
Wang, G.1
Balamotis, M.A.2
Stevens, J.L.3
Yamaguchi, Y.4
Handa, H.5
Berk, A.J.6
-
37
-
-
0028794516
-
Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C
-
Winston F., Dollard C., and Ricupero-Hovasse S.L. Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11 (1995) 53-55
-
(1995)
Yeast
, vol.11
, pp. 53-55
-
-
Winston, F.1
Dollard, C.2
Ricupero-Hovasse, S.L.3
-
38
-
-
0034626731
-
A transcription reinitiation intermediate that is stabilized by activator
-
Yudkovsky N., Ranish J.A., and Hahn S. A transcription reinitiation intermediate that is stabilized by activator. Nature 408 (2000) 225-229
-
(2000)
Nature
, vol.408
, pp. 225-229
-
-
Yudkovsky, N.1
Ranish, J.A.2
Hahn, S.3
-
39
-
-
0029841951
-
The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae
-
Zhao H., and Eide D. The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae. J. Biol. Chem. 271 (1996) 23203-23210
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 23203-23210
-
-
Zhao, H.1
Eide, D.2
-
40
-
-
33646075157
-
Genome-wide occupancy profile of Mediator and the Srb8-11 module reveals interactions with coding regions
-
this issue
-
Zhu X., Wirén M., Sinha I., Rasmussen N.N., Linder T., Holmberg S., Ekwall K., and Gustafsson C.M. Genome-wide occupancy profile of Mediator and the Srb8-11 module reveals interactions with coding regions. Mol. Cell 22 (2006) 169-178 this issue
-
(2006)
Mol. Cell
, vol.22
, pp. 169-178
-
-
Zhu, X.1
Wirén, M.2
Sinha, I.3
Rasmussen, N.N.4
Linder, T.5
Holmberg, S.6
Ekwall, K.7
Gustafsson, C.M.8
|