메뉴 건너뛰기




Volumn 22, Issue 2, 2006, Pages 179-192

Genome-Wide Location of the Coactivator Mediator: Binding without Activation and Transient Cdk8 Interaction on DNA

Author keywords

DNA

Indexed keywords

CYCLIN DEPENDENT KINASE 8; DNA; RNA POLYMERASE;

EID: 33646023157     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2006.03.023     Document Type: Article
Times cited : (131)

References (40)
  • 2
    • 0035883746 scopus 로고    scopus 로고
    • The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II
    • Bhoite L.T., Yu Y., and Stillman D.J. The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II. Genes Dev. 15 (2001) 2457-2469
    • (2001) Genes Dev. , vol.15 , pp. 2457-2469
    • Bhoite, L.T.1    Yu, Y.2    Stillman, D.J.3
  • 3
    • 1842524183 scopus 로고    scopus 로고
    • The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2
    • Bird A.J., Blankman E., Stillman D.J., Eide D.J., and Winge D.R. The Zap1 transcriptional activator also acts as a repressor by binding downstream of the TATA box in ZRT2. EMBO J. 23 (2004) 1123-1132
    • (2004) EMBO J. , vol.23 , pp. 1123-1132
    • Bird, A.J.1    Blankman, E.2    Stillman, D.J.3    Eide, D.J.4    Winge, D.R.5
  • 4
    • 0037113938 scopus 로고    scopus 로고
    • A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast
    • Borggrefe T., Davis R., Erdjument-Bromage H., Tempst P., and Kornberg R.D. A complex of the Srb8, -9, -10, and -11 transcriptional regulatory proteins from yeast. J. Biol. Chem. 277 (2002) 44202-44207
    • (2002) J. Biol. Chem. , vol.277 , pp. 44202-44207
    • Borggrefe, T.1    Davis, R.2    Erdjument-Bromage, H.3    Tempst, P.4    Kornberg, R.D.5
  • 5
    • 0037716755 scopus 로고    scopus 로고
    • Independent recruitment in vivo by Gal4 of two complexes required for transcription
    • Bryant G.O., and Ptashne M. Independent recruitment in vivo by Gal4 of two complexes required for transcription. Mol. Cell 11 (2003) 1301-1309
    • (2003) Mol. Cell , vol.11 , pp. 1301-1309
    • Bryant, G.O.1    Ptashne, M.2
  • 6
    • 3042760385 scopus 로고    scopus 로고
    • The Ras/PKA signaling pathway directly targets the Srb9 protein, a component of the general RNA polymerase II transcription apparatus
    • Chang Y.W., Howard S.C., and Herman P.K. The Ras/PKA signaling pathway directly targets the Srb9 protein, a component of the general RNA polymerase II transcription apparatus. Mol. Cell 15 (2004) 107-116
    • (2004) Mol. Cell , vol.15 , pp. 107-116
    • Chang, Y.W.1    Howard, S.C.2    Herman, P.K.3
  • 7
    • 0034964368 scopus 로고    scopus 로고
    • Cdk1 triggers association of RNA polymerase to cell cycle promoters only after recruitment of the mediator by SBF
    • Cosma M.P., Panizza S., and Nasmyth K. Cdk1 triggers association of RNA polymerase to cell cycle promoters only after recruitment of the mediator by SBF. Mol. Cell 7 (2001) 1213-1220
    • (2001) Mol. Cell , vol.7 , pp. 1213-1220
    • Cosma, M.P.1    Panizza, S.2    Nasmyth, K.3
  • 8
    • 0036671095 scopus 로고    scopus 로고
    • Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction
    • Davis J.A., Takagi Y., Kornberg R.D., and Asturias F.A. Structure of the yeast RNA polymerase II holoenzyme: Mediator conformation and polymerase interaction. Mol. Cell 10 (2002) 409-415
    • (2002) Mol. Cell , vol.10 , pp. 409-415
    • Davis, J.A.1    Takagi, Y.2    Kornberg, R.D.3    Asturias, F.A.4
  • 10
    • 16544365033 scopus 로고    scopus 로고
    • Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo
    • Geisberg J.V., and Struhl K. Quantitative sequential chromatin immunoprecipitation, a method for analyzing co-occupancy of proteins at genomic regions in vivo. Nucleic Acids Res. 32 (2004) e151
    • (2004) Nucleic Acids Res. , vol.32
    • Geisberg, J.V.1    Struhl, K.2
  • 13
    • 1542618343 scopus 로고    scopus 로고
    • Site-specific Srb10-dependent phosphorylation of the yeast Mediator subunit Med2 regulates gene expression from the 2-microm plasmid
    • Hallberg M., Polozkov G.V., Hu G.Z., Beve J., Gustafsson C.M., Ronne H., and Bjorklund S. Site-specific Srb10-dependent phosphorylation of the yeast Mediator subunit Med2 regulates gene expression from the 2-microm plasmid. Proc. Natl. Acad. Sci. USA 101 (2004) 3370-3375
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 3370-3375
    • Hallberg, M.1    Polozkov, G.V.2    Hu, G.Z.3    Beve, J.4    Gustafsson, C.M.5    Ronne, H.6    Bjorklund, S.7
  • 16
    • 0028282551 scopus 로고
    • A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II
    • Kim Y.J., Bjorklund S., Li Y., Sayre M.H., and Kornberg R.D. A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77 (1994) 599-608
    • (1994) Cell , vol.77 , pp. 599-608
    • Kim, Y.J.1    Bjorklund, S.2    Li, Y.3    Sayre, M.H.4    Kornberg, R.D.5
  • 17
    • 0028347674 scopus 로고
    • An RNA polymerase II holoenzyme responsive to activators
    • Koleske A.J., and Young R.A. An RNA polymerase II holoenzyme responsive to activators. Nature 368 (1994) 466-469
    • (1994) Nature , vol.368 , pp. 466-469
    • Koleske, A.J.1    Young, R.A.2
  • 18
    • 18844451820 scopus 로고    scopus 로고
    • Mediator and the mechanism of transcriptional activation
    • Kornberg R.D. Mediator and the mechanism of transcriptional activation. Trends Biochem. Sci. 30 (2005) 235-239
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 235-239
    • Kornberg, R.D.1
  • 19
    • 0344270881 scopus 로고    scopus 로고
    • Association of the Mediator complex with enhancers of active genes
    • Kuras L., Borggrefe T., and Kornberg R.D. Association of the Mediator complex with enhancers of active genes. Proc. Natl. Acad. Sci. USA 100 (2003) 13887-13891
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13887-13891
    • Kuras, L.1    Borggrefe, T.2    Kornberg, R.D.3
  • 21
    • 18944366286 scopus 로고    scopus 로고
    • Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator
    • Lewis B.A., Sims III R.J., Lane W.S., and Reinberg D. Functional characterization of core promoter elements: DPE-specific transcription requires the protein kinase CK2 and the PC4 coactivator. Mol. Cell 18 (2005) 471-481
    • (2005) Mol. Cell , vol.18 , pp. 471-481
    • Lewis, B.A.1    Sims III, R.J.2    Lane, W.S.3    Reinberg, D.4
  • 22
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb J.D., Liu X., Botstein D., and Brown P.O. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28 (2001) 327-334
    • (2001) Nat. Genet. , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 23
    • 0035831475 scopus 로고    scopus 로고
    • Yeast nuclear extract contains two major forms of RNA polymerase II mediator complexes
    • Liu Y., Ranish J.A., Aebersold R., and Hahn S. Yeast nuclear extract contains two major forms of RNA polymerase II mediator complexes. J. Biol. Chem. 276 (2001) 7169-7175
    • (2001) J. Biol. Chem. , vol.276 , pp. 7169-7175
    • Liu, Y.1    Ranish, J.A.2    Aebersold, R.3    Hahn, S.4
  • 25
    • 0036241663 scopus 로고    scopus 로고
    • Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
    • Pokholok D.K., Hannett N.M., and Young R.A. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. Mol. Cell 9 (2002) 799-809
    • (2002) Mol. Cell , vol.9 , pp. 799-809
    • Pokholok, D.K.1    Hannett, N.M.2    Young, R.A.3
  • 26
    • 20444382737 scopus 로고    scopus 로고
    • Regulation of transcription: from lambda to eukaryotes
    • Ptashne M. Regulation of transcription: from lambda to eukaryotes. Trends Biochem. Sci. 30 (2005) 275-279
    • (2005) Trends Biochem. Sci. , vol.30 , pp. 275-279
    • Ptashne, M.1
  • 28
    • 17044399754 scopus 로고    scopus 로고
    • Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit
    • Radonjic M., Andrau J.C., Lijnzaad P., Kemmeren P., Kockelkorn T.T., van Leenen D., van Berkum N.L., and Holstege F.C. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Mol. Cell 18 (2005) 171-183
    • (2005) Mol. Cell , vol.18 , pp. 171-183
    • Radonjic, M.1    Andrau, J.C.2    Lijnzaad, P.3    Kemmeren, P.4    Kockelkorn, T.T.5    van Leenen, D.6    van Berkum, N.L.7    Holstege, F.C.8
  • 30
    • 14544280757 scopus 로고    scopus 로고
    • Transcriptional regulation and the role of diverse coactivators in animal cells
    • Roeder R.G. Transcriptional regulation and the role of diverse coactivators in animal cells. FEBS Lett. 579 (2005) 909-915
    • (2005) FEBS Lett. , vol.579 , pp. 909-915
    • Roeder, R.G.1
  • 33
    • 2342465953 scopus 로고    scopus 로고
    • Recent highlights of RNA-polymerase-II-mediated transcription
    • Sims III R.J., Mandal S.S., and Reinberg D. Recent highlights of RNA-polymerase-II-mediated transcription. Curr. Opin. Cell Biol. 16 (2004) 263-271
    • (2004) Curr. Opin. Cell Biol. , vol.16 , pp. 263-271
    • Sims III, R.J.1    Mandal, S.S.2    Reinberg, D.3
  • 34
    • 0032762991 scopus 로고    scopus 로고
    • Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
    • ter Linde J.J., Liang H., Davis R.W., Steensma H.Y., van Dijken J.P., and Pronk J.T. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. J. Bacteriol. 181 (1999) 7409-7413
    • (1999) J. Bacteriol. , vol.181 , pp. 7409-7413
    • ter Linde, J.J.1    Liang, H.2    Davis, R.W.3    Steensma, H.Y.4    van Dijken, J.P.5    Pronk, J.T.6
  • 35
    • 23744490065 scopus 로고    scopus 로고
    • Expression-profiling of Mediator reveals an epistatic signal-transduction pathway with antagonistic submodules and highly specific downstream targets
    • van de Peppel J., Kettelarij N., van Bakel H., Kockelkorn T.T.J.P., van Leenen D., and Holstege F.C.P. Expression-profiling of Mediator reveals an epistatic signal-transduction pathway with antagonistic submodules and highly specific downstream targets. Mol. Cell 19 (2005) 511-522
    • (2005) Mol. Cell , vol.19 , pp. 511-522
    • van de Peppel, J.1    Kettelarij, N.2    van Bakel, H.3    Kockelkorn, T.T.J.P.4    van Leenen, D.5    Holstege, F.C.P.6
  • 36
    • 14644427848 scopus 로고    scopus 로고
    • Mediator requirement for both recruitment and postrecruitment steps in transcription initiation
    • Wang G., Balamotis M.A., Stevens J.L., Yamaguchi Y., Handa H., and Berk A.J. Mediator requirement for both recruitment and postrecruitment steps in transcription initiation. Mol. Cell 17 (2005) 683-694
    • (2005) Mol. Cell , vol.17 , pp. 683-694
    • Wang, G.1    Balamotis, M.A.2    Stevens, J.L.3    Yamaguchi, Y.4    Handa, H.5    Berk, A.J.6
  • 37
    • 0028794516 scopus 로고
    • Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C
    • Winston F., Dollard C., and Ricupero-Hovasse S.L. Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C. Yeast 11 (1995) 53-55
    • (1995) Yeast , vol.11 , pp. 53-55
    • Winston, F.1    Dollard, C.2    Ricupero-Hovasse, S.L.3
  • 38
    • 0034626731 scopus 로고    scopus 로고
    • A transcription reinitiation intermediate that is stabilized by activator
    • Yudkovsky N., Ranish J.A., and Hahn S. A transcription reinitiation intermediate that is stabilized by activator. Nature 408 (2000) 225-229
    • (2000) Nature , vol.408 , pp. 225-229
    • Yudkovsky, N.1    Ranish, J.A.2    Hahn, S.3
  • 39
    • 0029841951 scopus 로고    scopus 로고
    • The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae
    • Zhao H., and Eide D. The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae. J. Biol. Chem. 271 (1996) 23203-23210
    • (1996) J. Biol. Chem. , vol.271 , pp. 23203-23210
    • Zhao, H.1    Eide, D.2
  • 40
    • 33646075157 scopus 로고    scopus 로고
    • Genome-wide occupancy profile of Mediator and the Srb8-11 module reveals interactions with coding regions
    • this issue
    • Zhu X., Wirén M., Sinha I., Rasmussen N.N., Linder T., Holmberg S., Ekwall K., and Gustafsson C.M. Genome-wide occupancy profile of Mediator and the Srb8-11 module reveals interactions with coding regions. Mol. Cell 22 (2006) 169-178 this issue
    • (2006) Mol. Cell , vol.22 , pp. 169-178
    • Zhu, X.1    Wirén, M.2    Sinha, I.3    Rasmussen, N.N.4    Linder, T.5    Holmberg, S.6    Ekwall, K.7    Gustafsson, C.M.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.