메뉴 건너뛰기




Volumn 11, Issue 2, 2016, Pages

Pooled-peptide epitope mapping strategies are efficient and highly sensitive: An evaluation of methods for identifying human T cell epitope specificities in large-scale HIV vaccine efficacy trials

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; HUMAN IMMUNODEFICIENCY VIRUS VACCINE; MAJOR HISTOCOMPATIBILITY ANTIGEN; PEPTIDE; PLACEBO;

EID: 84959432907     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0147812     Document Type: Article
Times cited : (36)

References (62)
  • 1
    • 32944477067 scopus 로고    scopus 로고
    • The rational design of an AIDS vaccine
    • 16497577
    • Douek DC, Kwong PD, Nabel GJ. The rational design of an AIDS vaccine. Cell. 2006; 124: 677-81. doi: 10.1016/j.cell.2006.02.005 PMID: 16497577
    • (2006) Cell , vol.124 , pp. 677-681
    • Douek, D.C.1    Kwong, P.D.2    Nabel, G.J.3
  • 3
    • 0029953952 scopus 로고    scopus 로고
    • Detection and quantification of blood-derived CD8+ T lymphocytes secreting tumor necrosis factor α in response to HLA-A2.1-binding melanoma and viral peptide antigens
    • 8666832
    • Herr W, Schneider J, Lohse AW, Meyer Zum Büschenfelde KH, Wölfel T. Detection and quantification of blood-derived CD8+ T lymphocytes secreting tumor necrosis factor α in response to HLA-A2.1-binding melanoma and viral peptide antigens. J Immunol Methods. 1996; 191: 131-142. PMID: 8666832
    • (1996) J Immunol Methods , vol.191 , pp. 131-142
    • Herr, W.1    Schneider, J.2    Lohse, A.W.3    Meyer Zum-Büschenfelde, K.H.4    Wölfel, T.5
  • 4
    • 0031590669 scopus 로고    scopus 로고
    • Evaluation of the interferon-gamma ELISPOT-assay for quantification of peptide specific T lymphocytes from peripheral blood
    • 9520299
    • Schmittel A, Keilholz U, Scheibenbogen C. Evaluation of the interferon-gamma ELISPOT-assay for quantification of peptide specific T lymphocytes from peripheral blood. J Immunol Methods. 1997; 210: 167-174. PMID: 9520299
    • (1997) J Immunol Methods , vol.210 , pp. 167-174
    • Schmittel, A.1    Keilholz, U.2    Scheibenbogen, C.3
  • 5
    • 6944238601 scopus 로고    scopus 로고
    • Correlation between interferon-gamma secretion and cytotoxicity, in virus-specific memory T cells
    • 15478077
    • Horton H, Russell N, Moore E, Frank I, Baydo R, Havenar-Daughton C, et al. Correlation between interferon-gamma secretion and cytotoxicity, in virus-specific memory T cells. J Infect Dis. 2004; 190: 1692-6. doi: 10.1086/424490 PMID: 15478077
    • (2004) J Infect Dis. , vol.190 , pp. 1692-1696
    • Horton, H.1    Russell, N.2    Moore, E.3    Frank, I.4    Baydo, R.5    Havenar-Daughton, C.6
  • 6
    • 27144489392 scopus 로고    scopus 로고
    • Durable human memory T cells quantifiable by cultured enzyme-linked immunospot assays are induced by heterologous prime boost immunization and correlate with protection against malaria
    • 16237057
    • Keating SM, Bejon P, Berthoud T, Vuola JM, Todryk S, Webster DP, et al. Durable Human Memory T Cells Quantifiable by Cultured Enzyme-Linked Immunospot Assays Are Induced by Heterologous Prime Boost Immunization and Correlate with Protection against Malaria. J Immunol. 2005; 175: 5675-5680. doi: 10.4049/jimmunol.175.9.5675 PMID: 16237057
    • (2005) J Immunol. , vol.175 , pp. 5675-5680
    • Keating, S.M.1    Bejon, P.2    Berthoud, T.3    Vuola, J.M.4    Todryk, S.5    Webster, D.P.6
  • 7
    • 67650699591 scopus 로고    scopus 로고
    • Randomized, double-blind, phase 2a trial of falciparum malaria vaccines RTS, S/AS01B and RTS, S/AS02A in malaria-naive adults: Safety, efficacy, and immunologic associates of protection
    • 19569965
    • Kester KE, Cummings JF, Ofori-Anyinam O, Ockenhouse CF, Krzych U, Moris P, et al. Randomized, double-blind, phase 2a trial of falciparum malaria vaccines RTS, S/AS01B and RTS, S/AS02A in malaria-naive adults: safety, efficacy, and immunologic associates of protection. J Infect Dis. 2009; 200: 337-46. doi: 10.1086/600120 PMID: 19569965
    • (2009) J Infect Dis. , vol.200 , pp. 337-346
    • Kester, K.E.1    Cummings, J.F.2    Ofori-Anyinam, O.3    Ockenhouse, C.F.4    Krzych, U.5    Moris, P.6
  • 8
    • 11144353591 scopus 로고    scopus 로고
    • A CD4(+) T-cell immune response to a conserved epitope in the circumsporozoite protein correlates with protection from natural plasmodium falciparum infection and disease
    • 15034567
    • Reece WHH, Pinder M, Gothard PK, Milligan P, Bojang K, Doherty T, et al. A CD4(+) T-cell immune response to a conserved epitope in the circumsporozoite protein correlates with protection from natural Plasmodium falciparum infection and disease. Nat Med. 2004; 10: 406-10. doi: 10.1038/nm1009 PMID: 15034567
    • (2004) Nat Med. , vol.10 , pp. 406-410
    • Reece, W.H.H.1    Pinder, M.2    Gothard, P.K.3    Milligan, P.4    Bojang, K.5    Doherty, T.6
  • 9
    • 47649085021 scopus 로고    scopus 로고
    • Correlation of cellular immune responses with protection against culture-confirmed influenza virus in young children
    • 18448618
    • Forrest BD, Pride MW, Dunning AJ, Capeding MRZ, Chotpitayasunondh T, Tam JS, et al. Correlation of cellular immune responses with protection against culture-confirmed influenza virus in young children. Clin Vaccine Immunol. 2008; 15: 1042-53. doi: 10.1128/CVI.00397-07 PMID: 18448618
    • (2008) Clin Vaccine Immunol. , vol.15 , pp. 1042-1053
    • Forrest, B.D.1    Pride, M.W.2    Dunning, A.J.3    Capeding, M.R.Z.4    Chotpitayasunondh, T.5    Tam, J.S.6
  • 10
    • 33745753413 scopus 로고    scopus 로고
    • Correlation of antiviral T-cell responses with suppression of viral rebound in chronic hepatitis B carriers: A proof-of-concept study
    • 16525482
    • Yang S-H, Lee C-G, Park S-H, Im S-J, Kim Y-M, Son J-M, et al. Correlation of antiviral T-cell responses with suppression of viral rebound in chronic hepatitis B carriers: a proof-of-concept study. Gene Ther. 2006; 13: 1110-7. doi: 10.1038/sj.gt.3302751 PMID: 16525482
    • (2006) Gene Ther. , vol.13 , pp. 1110-1117
    • Yang, S.-H.1    Lee, C.-G.2    Park, S.-H.3    Im, S.-J.4    Kim, Y.-M.5    Son, J.-M.6
  • 11
    • 84885028465 scopus 로고    scopus 로고
    • Vaccine-induced gag-specific T cells are associated with reduced viremia after HIV-1 infection
    • 23878319
    • Janes H, Friedrich DP, Krambrink A, Smith RJ, Kallas EG, Horton H, et al. Vaccine-induced gag-specific T cells are associated with reduced viremia after HIV-1 infection. J Infect Dis. 2013; 208: 1231-9. doi: 10.1093/infdis/jit322 PMID: 23878319
    • (2013) J Infect Dis. , vol.208 , pp. 1231-1239
    • Janes, H.1    Friedrich, D.P.2    Krambrink, A.3    Smith, R.J.4    Kallas, E.G.5    Horton, H.6
  • 12
    • 10744227803 scopus 로고    scopus 로고
    • Comparison of the ELISPOT and cytokine flow cytometry assays for the enumeration of antigen-specific T cells
    • 14659906
    • Karlsson AC, Martin JN, Younger SR, Bredt BM, Epling L, Ronquillo R, et al. Comparison of the ELISPOT and cytokine flow cytometry assays for the enumeration of antigen-specific T cells. J Immunol Methods. 2003; 283: 141-153. PMID: 14659906
    • (2003) J Immunol Methods , vol.283 , pp. 141-153
    • Karlsson, A.C.1    Martin, J.N.2    Younger, S.R.3    Bredt, B.M.4    Epling, L.5    Ronquillo, R.6
  • 13
    • 0037367965 scopus 로고    scopus 로고
    • T-cell epitope mapping using the ELISPOT approach
    • 12725791
    • Anthony D, Lehman P. T-cell epitope mapping using the ELISPOT approach. Methods. 2003; 29: 260-269. PMID: 12725791
    • (2003) Methods , vol.29 , pp. 260-269
    • Anthony, D.1    Lehman, P.2
  • 14
    • 78650779470 scopus 로고    scopus 로고
    • Equivalence of ELISpot assays demonstrated between major HIV network laboratories
    • Gill DK, Huang Y, Levine GL, Sambor A, Carter DK, Sato A, et al. Equivalence of ELISpot Assays Demonstrated between Major HIV Network Laboratories. PLoS One. 2010; 5: 10.
    • (2010) PLoS One , vol.5 , pp. 10
    • Gill, D.K.1    Huang, Y.2    Levine, G.L.3    Sambor, A.4    Carter, D.K.5    Sato, A.6
  • 15
    • 0036431195 scopus 로고    scopus 로고
    • Design and validation of an enzyme-linked immunospot assay for use in clinical trials of candidate HIV vaccines
    • 12079556
    • Mwau M, McMichael AJ, Hanke T. Design and validation of an enzyme-linked immunospot assay for use in clinical trials of candidate HIV vaccines. AIDS Res Hum Retroviruses. 2002; 18: 611-8. doi: 10.1089/088922202760019301 PMID: 12079556
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 611-618
    • Mwau, M.1    McMichael, A.J.2    Hanke, T.3
  • 16
    • 0037439309 scopus 로고    scopus 로고
    • Moving to human immunodeficiency virus type 1 vaccine efficacy trials: Defining T cell responses as potential correlates of immunity
    • 12552447
    • Russell ND, Hudgens MG, Ha R, Havenar-Daughton C, McElrath MJ. Moving to human immunodeficiency virus type 1 vaccine efficacy trials: defining T cell responses as potential correlates of immunity. J Infect Dis. 2003; 187: 226-42. doi: 10.1086/367702 PMID: 12552447
    • (2003) J Infect Dis. , vol.187 , pp. 226-242
    • Russell, N.D.1    Hudgens, M.G.2    Ha, R.3    Havenar-Daughton, C.4    McElrath, M.J.5
  • 19
    • 33748879767 scopus 로고    scopus 로고
    • Statistical positivity criteria for the analysis of ELISpot assay data in HIV-1 vaccine trials
    • 16959262
    • Moodie Z, Huang Y, Gu L, Hural J, Self SG. Statistical positivity criteria for the analysis of ELISpot assay data in HIV-1 vaccine trials. J Immunol Methods. 2006; 315: 121-32. PMID: 16959262
    • (2006) J Immunol Methods , vol.315 , pp. 121-132
    • Moodie, Z.1    Huang, Y.2    Gu, L.3    Hural, J.4    Self, S.G.5
  • 21
    • 80555129210 scopus 로고    scopus 로고
    • Response determination criteria for ELISPOT: Toward a standard that can be applied across laboratories
    • 21956511
    • Moodie Z, Price L, Janetzki S, Britten CM. Response determination criteria for ELISPOT: toward a standard that can be applied across laboratories. Methods Mol Biol. 2012; 792: 185-96. doi: 10.1007/978-1-61779-325-7-15 PMID: 21956511
    • (2012) Methods Mol Biol. , vol.792 , pp. 185-196
    • Moodie, Z.1    Price, L.2    Janetzki, S.3    Britten, C.M.4
  • 22
    • 2942568229 scopus 로고    scopus 로고
    • Statistical considerations for the design and analysis of the ELISpot assay in HIV-1 vaccine trials
    • 15183082
    • Hudgens MG, Self SG, Chiu Y-L, Russell ND, Horton H, McElrath MJ. Statistical considerations for the design and analysis of the ELISpot assay in HIV-1 vaccine trials. J Immunol Methods. 2004; 288: 19-34. PMID: 15183082
    • (2004) J Immunol Methods , vol.288 , pp. 19-34
    • Hudgens, M.G.1    Self, S.G.2    Chiu, Y.-L.3    Russell, N.D.4    Horton, H.5    McElrath, M.J.6
  • 23
    • 84861325273 scopus 로고    scopus 로고
    • Widespread impact of HLA restriction on immune control and escape pathways of HIV-1
    • 22379086
    • Carlson JM, Listgarten J, Pfeifer N, Tan V, Kadie C, Walker BD, et al. Widespread impact of HLA restriction on immune control and escape pathways of HIV-1. J Virol. 2012; 86: 5230-43. doi: 10.1128/JVI.06728-11 PMID: 22379086
    • (2012) J Virol. , vol.86 , pp. 5230-5243
    • Carlson, J.M.1    Listgarten, J.2    Pfeifer, N.3    Tan, V.4    Kadie, C.5    Walker, B.D.6
  • 24
    • 0006582115 scopus 로고    scopus 로고
    • Influence of combinations of human major histocompatibility complex genes on the course of HIV-1 infection
    • Kaslow R, Carrington M, Apple R, Park L. Influence of combinations of human major histocompatibility complex genes on the course of HIV-1 infection. Nat Med. 1996; Available: http://www.nature.com/nm/journal/v2/n4/abs/nm0496-405.html.
    • (1996) Nat Med.
    • Kaslow, R.1    Carrington, M.2    Apple, R.3    Park, L.4
  • 25
    • 7844240121 scopus 로고    scopus 로고
    • Association of HLA profiles with early plasma viral load, CD4+ cell count and rate of progression to AIDS following acute HIV-1 infection
    • 9833851
    • Saah A, Hoover D, Weng S, Carrington M. Association of HLA profiles with early plasma viral load, CD4+ cell count and rate of progression to AIDS following acute HIV-1 infection. Aids. 1998; 2107-2113. Available: http://journals.lww.com/aidsonline/Abstract/1998/16000/Association-of-HLA-profiles-with-early-plasma.5.aspx. PMID: 9833851
    • (1998) AIDS , pp. 2107-2113
    • Saah, A.1    Hoover, D.2    Weng, S.3    Carrington, M.4
  • 26
    • 77956827161 scopus 로고    scopus 로고
    • Additive contribution of HLA class I alleles in the immune control of HIV-1 infection
    • 20660184
    • Leslie A, Matthews PC, Listgarten J, Carlson JM, Kadie C, Ndung'u T, et al. Additive contribution of HLA class I alleles in the immune control of HIV-1 infection. J Virol. 2010; 84: 9879-88. doi: 10.1128/JVI.00320-10 PMID: 20660184
    • (2010) J Virol. , vol.84 , pp. 9879-9888
    • Leslie, A.1    Matthews, P.C.2    Listgarten, J.3    Carlson, J.M.4    Kadie, C.5    Ndung'u, T.6
  • 28
    • 0036547156 scopus 로고    scopus 로고
    • The quest for an AIDS vaccine: Is the CD8+ T-cell approach feasible?
    • 12001999
    • McMichael A, Hanke T. The quest for an AIDS vaccine: is the CD8+ T-cell approach feasible? Nat Rev Immunol. 2002; 2: 283-91. doi: 10.1038/nri779 PMID: 12001999
    • (2002) Nat Rev Immunol. , vol.2 , pp. 283-291
    • McMichael, A.1    Hanke, T.2
  • 29
    • 73349094086 scopus 로고    scopus 로고
    • Vaccination with ALVAC and ADISVAX to prevent HIV-1 infection in Thailand
    • 19843557
    • Rerks-Ngarm S, Pitisuttithum P. Vaccination with ALVAC and ADISVAX to Prevent HIV-1 Infection in Thailand. N Engl J Med. 2009; 361: 2209-2220. doi: 10.1056/NEJMoa0908492 PMID: 19843557
    • (2009) N Engl J Med. , vol.361 , pp. 2209-2220
    • Rerks-Ngarm, S.1    Pitisuttithum, P.2
  • 30
    • 56649114351 scopus 로고    scopus 로고
    • HIV-1 vaccine-induced immunity in the test-of-concept step study: A case-cohort analysis
    • 19012957
    • McElrath MJ, De Rosa SC, Moodie Z, Dubey S, Kierstead L, Janes H, et al. HIV-1 vaccine-induced immunity in the test-of-concept Step Study: a case-cohort analysis. Lancet. 2008; 372: 1894-905. doi: 10.1016/S0140-6736(08)61592-5 PMID: 19012957
    • (2008) Lancet , vol.372 , pp. 1894-1905
    • McElrath, M.J.1    De Rosa, S.C.2    Moodie, Z.3    Dubey, S.4    Kierstead, L.5    Janes, H.6
  • 32
    • 60049098638 scopus 로고    scopus 로고
    • Expanded breadth of the T-cell response to mosaic human immunodeficiency virus type 1 envelope DNA vaccination
    • 19109395
    • Kong W-P, Wu L, Wallstrom TC, Fischer W, Yang Z-Y, Ko S-Y, et al. Expanded breadth of the T-cell response to mosaic human immunodeficiency virus type 1 envelope DNA vaccination. J Virol. 2009; 83: 2201-15. doi: 10.1128/JVI.02256-08 PMID: 19109395
    • (2009) J Virol. , vol.83 , pp. 2201-2215
    • Kong, W.-P.1    Wu, L.2    Wallstrom, T.C.3    Fischer, W.4    Yang, Z.-Y.5    Ko, S.-Y.6
  • 33
    • 77958490167 scopus 로고    scopus 로고
    • Induction of immunity to human immunodeficiency virus type-1 by vaccination
    • Elsevier Inc.
    • McElrath MJ, Haynes BF. Induction of immunity to human immunodeficiency virus type-1 by vaccination. Immunity. Elsevier Inc.; 2010; 33: 542-54. doi: 10.1016/j.immuni.2010.09.011
    • (2010) Immunity , vol.33 , pp. 542-554
    • McElrath, M.J.1    Haynes, B.F.2
  • 34
    • 33750822983 scopus 로고    scopus 로고
    • Preservation of T cell proliferation restricted by protective HLA alleles is critical for immune control of HIV-1 infection
    • 17082660
    • Horton H, Frank I, Baydo R, Jalbert E, Penn J, Wilson S, et al. Preservation of T Cell Proliferation Restricted by Protective HLA Alleles Is Critical for Immune Control of HIV-1 Infection. J Immunol. 2006; 177: 7406-7415. doi: 10.4049/jimmunol.177.10.7406 PMID: 17082660
    • (2006) J Immunol. , vol.177 , pp. 7406-7415
    • Horton, H.1    Frank, I.2    Baydo, R.3    Jalbert, E.4    Penn, J.5    Wilson, S.6
  • 35
    • 85031981942 scopus 로고    scopus 로고
    • Persistent recognition of autologous virus by high-avidity CD8 T cells in chronic, progressive human immunodeficiency virus type 1 infection persistent recognition of autologous virus by high-avidity CD8 T cells in chronic, progressive human immunodefic
    • Draenert R, Verrill CL, Tang Y, Allen TM, Wurcel AG, Boczanowski M, et al. Persistent Recognition of Autologous Virus by High-Avidity CD8 T Cells in Chronic, Progressive Human Immunodeficiency Virus Type 1 Infection Persistent Recognition of Autologous Virus by High-Avidity CD8 T Cells in Chronic, Progressive Human Immunodefic. J Virol. 2004;
    • (2004) J Virol.
    • Draenert, R.1    Verrill, C.L.2    Tang, Y.3    Allen, T.M.4    Wurcel, A.G.5    Boczanowski, M.6
  • 36
    • 33947420041 scopus 로고    scopus 로고
    • Control of human immunodeficiency virus type 1 is associated with HLA-B∗13 and targeting of multiple gag-specific CD8+ tcell epitopes
    • 17251285
    • Honeyborne I, Prendergast A, Pereyra F, Leslie A, Crawford H, Payne R, et al. Control of human immunodeficiency virus type 1 is associated with HLA-B∗13 and targeting of multiple gag-specific CD8+ Tcell epitopes. J Virol. 2007; 81: 3667-72. doi: 10.1128/JVI.02689-06 PMID: 17251285
    • (2007) J Virol. , vol.81 , pp. 3667-3672
    • Honeyborne, I.1    Prendergast, A.2    Pereyra, F.3    Leslie, A.4    Crawford, H.5    Payne, R.6
  • 37
    • 34547138161 scopus 로고    scopus 로고
    • Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B∗5703-restricted gag epitope in chronic human immunodeficiency virus type 1 infection
    • 17507468
    • Crawford H, Prado JG, Leslie A, Hué S, Honeyborne I, Reddy S, et al. Compensatory mutation partially restores fitness and delays reversion of escape mutation within the immunodominant HLA-B∗5703-restricted Gag epitope in chronic human immunodeficiency virus type 1 infection. J Virol. 2007; 81: 8346-51. doi: 10.1128/JVI.00465-07 PMID: 17507468
    • (2007) J Virol. , vol.81 , pp. 8346-8351
    • Crawford, H.1    Prado, J.G.2    Leslie, A.3    Hué, S.4    Honeyborne, I.5    Reddy, S.6
  • 38
    • 33846813973 scopus 로고    scopus 로고
    • Mutually exclusive T-cell receptor induction and differential susceptibility to human immunodeficiency virus type 1 mutational escape associated with a two-amino-acid difference between HLA class I subtypes
    • 17121793
    • Yu XG, Lichterfeld M, Chetty S, Williams KL, Mui SK, Miura T, et al. Mutually exclusive T-cell receptor induction and differential susceptibility to human immunodeficiency virus type 1 mutational escape associated with a two-amino-acid difference between HLA class I subtypes. J Virol. 2007; 81: 1619-31. doi: 10.1128/JVI.01580-06 PMID: 17121793
    • (2007) J Virol. , vol.81 , pp. 1619-1631
    • Yu, X.G.1    Lichterfeld, M.2    Chetty, S.3    Williams, K.L.4    Mui, S.K.5    Miura, T.6
  • 39
    • 33846057692 scopus 로고    scopus 로고
    • Peptide selection for human immunodeficiency virus type 1 CTL-based vaccine evaluation
    • 16890329
    • Li F, Malhotra U, Gilbert PB, Hawkins NR, Duerr AC, McElrath JM, et al. Peptide selection for human immunodeficiency virus type 1 CTL-based vaccine evaluation. Vaccine. 2006; 24: 6893-904. PMID: 16890329
    • (2006) Vaccine , vol.24 , pp. 6893-6904
    • Li, F.1    Malhotra, U.2    Gilbert, P.B.3    Hawkins, N.R.4    Duerr, A.C.5    McElrath, J.M.6
  • 40
    • 33846111016 scopus 로고    scopus 로고
    • Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants
    • 17187074
    • Fischer W, Perkins S, Theiler J, Bhattacharya T, Yusim K, Funkhouser R, et al. Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants. Nat Med. 2007; 13: 100-6. doi: 10.1038/nm1461 PMID: 17187074
    • (2007) Nat Med. , vol.13 , pp. 100-106
    • Fischer, W.1    Perkins, S.2    Theiler, J.3    Bhattacharya, T.4    Yusim, K.5    Funkhouser, R.6
  • 41
    • 84895904764 scopus 로고    scopus 로고
    • Vaccine-elicited human T cells recognizing conserved protein regions inhibit HIV-1
    • 24166483
    • Borthwick N, Ahmed T, Ondondo B, Hayes P, Rose A, Ebrahimsa U, et al. Vaccine-elicited Human T Cells Recognizing Conserved Protein Regions Inhibit HIV-1. Mol Ther. 2014; 22: 464-475. doi: 10.1038/mt.2013.248 PMID: 24166483
    • (2014) Mol Ther. , vol.22 , pp. 464-475
    • Borthwick, N.1    Ahmed, T.2    Ondondo, B.3    Hayes, P.4    Rose, A.5    Ebrahimsa, U.6
  • 42
    • 78649232054 scopus 로고    scopus 로고
    • Optimal configuration of a square array group testing algorithm
    • 21218195
    • Hudgens M, Hae-Young K. Optimal configuration of a square array group testing algorithm. Commun Stat Theory Methods. 2011; 40: 436-448. PMID: 21218195
    • (2011) Commun Stat Theory Methods , vol.40 , pp. 436-448
    • Hudgens, M.1    Hae-Young, K.2
  • 43
    • 84862896501 scopus 로고    scopus 로고
    • Group testing for case identification with correlated responses
    • 21950447
    • Lendle SD, Hudgens MG, Qaqish BF. Group testing for case identification with correlated responses. Biometrics. 2012; 68: 532-40. doi: 10.1111/j.1541-0420.2011.01674.x PMID: 21950447
    • (2012) Biometrics , vol.68 , pp. 532-540
    • Lendle, S.D.1    Hudgens, M.G.2    Qaqish, B.F.3
  • 46
    • 0037373703 scopus 로고    scopus 로고
    • Optimized determination of T cell epitope responses
    • 12609547
    • Roederer M, Koup RA. Optimized determination of T cell epitope responses. J Immunol Methods. 2003; 274: 221-228. PMID: 12609547
    • (2003) J Immunol Methods , vol.274 , pp. 221-228
    • Roederer, M.1    Koup, R.A.2
  • 47
    • 56649105122 scopus 로고    scopus 로고
    • Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the step study): A double-blind, randomised, placebo-controlled, test-of-concept trial
    • 19012954
    • Buchbinder SP, Mehrotra D V, Duerr A, Fitzgerald DW, Mogg R, Li D, et al. Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the Step Study): a double-blind, randomised, placebo-controlled, test-of-concept trial. Lancet. 2008; 372: 1881-93. doi: 10.1016/S0140-6736(08)61591-3 PMID: 19012954
    • (2008) Lancet , vol.372 , pp. 1881-1893
    • Buchbinder, S.P.1    Mehrotra, D.V.2    Duerr, A.3    Fitzgerald, D.W.4    Mogg, R.5    Li, D.6
  • 48
    • 84855445252 scopus 로고    scopus 로고
    • Human adenovirus-specific T cells modulate HIV-specific T cell responses to an Ad5-vectored HIV-1 vaccine
    • 22201684
    • Frahm N, DeCamp AC, Friedrich DP, Carter DK, Defawe OD, Kublin JG, et al. Human adenovirus-specific T cells modulate HIV-specific T cell responses to an Ad5-vectored HIV-1 vaccine. J Clin Invest. 2012; 122: 359-67. doi: 10.1172/JCI60202 PMID: 22201684
    • (2012) J Clin Invest. , vol.122 , pp. 359-367
    • Frahm, N.1    DeCamp, A.C.2    Friedrich, D.P.3    Carter, D.K.4    Defawe, O.D.5    Kublin, J.G.6
  • 49
    • 39549084433 scopus 로고    scopus 로고
    • NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence
    • 17726526
    • Nielsen M, Lundegaard C, Blicher T, Lamberth K, Harndahl M, Justesen S, et al. NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence. PLoS One. 2007; 2: e796. doi: 10.1371/journal.pone.0000796 PMID: 17726526
    • (2007) PLoS One , vol.2 , pp. e796
    • Nielsen, M.1    Lundegaard, C.2    Blicher, T.3    Lamberth, K.4    Harndahl, M.5    Justesen, S.6
  • 50
    • 33746132748 scopus 로고    scopus 로고
    • A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus
    • 16767078
    • Moutaftsi M, Peters B, Pasquetto V, Tscharke DC, Sidney J, Bui H-H, et al. A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus. Nat Biotechnol. 2006; 24: 817-9. doi: 10.1038/nbt1215 PMID: 16767078
    • (2006) Nat Biotechnol , vol.24 , pp. 817-819
    • Moutaftsi, M.1    Peters, B.2    Pasquetto, V.3    Tscharke, D.C.4    Sidney, J.5    Bui, H.-H.6
  • 51
    • 78651260398 scopus 로고    scopus 로고
    • HLArestrictor-A tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides
    • 21079948
    • Erup Larsen M, Kloverpris H, Stryhn A, Koofhethile CK, Sims S, Ndung'u T, et al. HLArestrictor-A tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides. Immunogenetics. 2011; 63: 43-55. doi: 10.1007/s00251-010-0493-5 PMID: 21079948
    • (2011) Immunogenetics , vol.63 , pp. 43-55
    • Erup Larsen, M.1    Kloverpris, H.2    Stryhn, A.3    Koofhethile, C.K.4    Sims, S.5    Ndung'u, T.6
  • 52
    • 25444498776 scopus 로고    scopus 로고
    • Simultaneous assessment of cytotoxic T lymphocyte responses against multiple viral infections by combined usage of optimal epitope matrices, anti-CD3 mAb T-cell expansion and "Recycle spot"
    • 15888204
    • Bihl FK, Loggi E, Chisholm J V, Hewitt HS, Henry LM, Linde C, et al. Simultaneous assessment of cytotoxic T lymphocyte responses against multiple viral infections by combined usage of optimal epitope matrices, anti-CD3 mAb T-cell expansion and "Recycle Spot." J Transl Med. 2005; 3: 20. doi: 10.1186/1479-5876-3-20 PMID: 15888204
    • (2005) J Transl Med. , vol.3 , pp. 20
    • Bihl, F.K.1    Loggi, E.2    Chisholm, J.V.3    Hewitt, H.S.4    Henry, L.M.5    Linde, C.6
  • 53
    • 10744226946 scopus 로고    scopus 로고
    • Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities
    • 14963115
    • Frahm N, Korber B, Adams C, Szinger J, Addo M, Feeney M, et al. Consistent cytotoxic-T-lymphocyte targeting of immunodominant regions in human immunodeficiency virus across multiple ethnicities. J Virol. 2004; 78: 2187-2200. PMID: 14963115
    • (2004) J Virol. , vol.78 , pp. 2187-2200
    • Frahm, N.1    Korber, B.2    Adams, C.3    Szinger, J.4    Addo, M.5    Feeney, M.6
  • 54
    • 33846101731 scopus 로고    scopus 로고
    • CD8+ T-cell responses to different HIV proteins have discordant associations with viral load
    • 17173051
    • Kiepiela P, Ngumbela K, Thobakgale C, Ramduth D, Honeyborne I, Moodley E, et al. CD8+ T-cell responses to different HIV proteins have discordant associations with viral load. Nat Med. 2007; 13: 46-53. doi: 10.1038/nm1520 PMID: 17173051
    • (2007) Nat Med. , vol.13 , pp. 46-53
    • Kiepiela, P.1    Ngumbela, K.2    Thobakgale, C.3    Ramduth, D.4    Honeyborne, I.5    Moodley, E.6
  • 56
    • 79958726847 scopus 로고    scopus 로고
    • Mapping HIV-1 vaccine induced T-cell responses: Bias towards less-conserved regions and potential impact on vaccine efficacy in the step study
    • 21695251
    • Li F, Finnefrock AC, Dubey SA, Korber BTM, Szinger J, Cole S, et al. Mapping HIV-1 vaccine induced T-cell responses: bias towards less-conserved regions and potential impact on vaccine efficacy in the Step study. PLoS One. 2011; 6: e20479. doi: 10.1371/journal.pone.0020479 PMID: 21695251
    • (2011) PLoS One , vol.6 , pp. e20479
    • Li, F.1    Finnefrock, A.C.2    Dubey, S.A.3    Korber, B.T.M.4    Szinger, J.5    Cole, S.6
  • 57
    • 84861173075 scopus 로고    scopus 로고
    • The Thai phase III trial (RV144) vaccine regimen induces T cell responses that preferentially target epitopes within the V2 region of HIV-1 envelope
    • 22529301
    • de Souza MS, Ratto-Kim S, Chuenarom W, Schuetz A, Chantakulkij S, Nuntapinit B, et al. The Thai phase III trial (RV144) vaccine regimen induces T cell responses that preferentially target epitopes within the V2 region of HIV-1 envelope. J Immunol. 2012; 188: 5166-76. doi: 10.4049/jimmunol. 1102756 PMID: 22529301
    • (2012) J Immunol. , vol.188 , pp. 5166-5176
    • De Souza, M.S.1    Ratto-Kim, S.2    Chuenarom, W.3    Schuetz, A.4    Chantakulkij, S.5    Nuntapinit, B.6
  • 58
    • 74849137072 scopus 로고    scopus 로고
    • Immunological mechanisms underlying protection mediated by RTS, S: A review of the available data
    • 20042088
    • Moorthy VS, Ballou WR. Immunological mechanisms underlying protection mediated by RTS, S: a review of the available data. Malar J. 2009; 8: 312. doi: 10.1186/1475-2875-8-312 PMID: 20042088
    • (2009) Malar J. , vol.8 , pp. 312
    • Moorthy, V.S.1    Ballou, W.R.2
  • 59
    • 79951811069 scopus 로고    scopus 로고
    • Ag85B-ESAT-6 adjuvanted with IC31® promotes strong and long-lived mycobacterium tuberculosis specific T cell responses in volunteers with previous BCG vaccination or tuberculosis infection
    • 21256189
    • van Dissel JT, Soonawala D, Joosten SA, Prins C, Arend SM, Bang P, et al. Ag85B-ESAT-6 adjuvanted with IC31® promotes strong and long-lived Mycobacterium tuberculosis specific T cell responses in volunteers with previous BCG vaccination or tuberculosis infection. Vaccine. 2011; 29: 2100-9. doi: 10.1016/j.vaccine.2010.12.135 PMID: 21256189
    • (2011) Vaccine , vol.29 , pp. 2100-2109
    • Van Dissel, J.T.1    Soonawala, D.2    Joosten, S.A.3    Prins, C.4    Arend, S.M.5    Bang, P.6
  • 60
    • 84905640078 scopus 로고    scopus 로고
    • The immunodominant T-cell epitopes of the mycolyl-transferases of the antigen 85 complex of M. Tuberculosis
    • 25071781
    • Huygen K. The Immunodominant T-Cell Epitopes of the Mycolyl-Transferases of the Antigen 85 Complex of M. tuberculosis. Front Immunol. 2014; 5: 321. doi: 10.3389/fimmu.2014.00321 PMID: 25071781
    • (2014) Front Immunol. , vol.5 , pp. 321
    • Huygen, K.1
  • 61
    • 2142758670 scopus 로고    scopus 로고
    • Impact of intrapeptide epitope location on CD8 T cell recognition: Implications for design of overlapping peptide panels
    • Draenert R, Brander C, Xu G, Altfeld M. Impact of intrapeptide epitope location on CD8 T cell recognition: implications for design of overlapping peptide panels. Aids. 2004;
    • (2004) AIDS
    • Draenert, R.1    Brander, C.2    Xu, G.3    Altfeld, M.4
  • 62
    • 33847380680 scopus 로고    scopus 로고
    • A dual color ELISPOT method for the simultaneous detection of IL-2 and IFN-gamma HIV-specific immune responses
    • 17222422
    • Boulet S, Ndongala ML, Peretz Y, Boisvert M-P, Boulassel M-R, Tremblay C, et al. A dual color ELISPOT method for the simultaneous detection of IL-2 and IFN-gamma HIV-specific immune responses. J Immunol Methods. 2007; 320: 18-29. PMID: 17222422
    • (2007) J Immunol Methods , vol.320 , pp. 18-29
    • Boulet, S.1    Ndongala, M.L.2    Peretz, Y.3    Boisvert, M.-P.4    Boulassel, M.-R.5    Tremblay, C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.