Group Testing for Case Identification with Correlated Responses

Biometrics

Volumn 68, Issue 2, 2012, Pages 532-540

  Lendle, Samuel D ^a   Hudgens, Michael G ^a   Qaqish, Bahjat F ^a  

^a IL   (United States)

Author keywords

Composite sampling; Epitope mapping; Exchangeable binary random variables; Group testing; HIV; Matrix testing; Pooled testing

Indexed keywords

EFFICIENCY; EPITOPES; LAKES; RANDOM VARIABLES;

BINARY RANDOM VARIABLES; COMPOSITE SAMPLING; EPITOPE MAPPING; EXCHANGEABLE BINARY RANDOM VARIABLE; GROUP TESTING; HIV; MATRIX; MATRIX TESTING; PER UNIT; POOLED TESTING;

MATRIX ALGEBRA;

CORRELATION; HUMAN IMMUNODEFICIENCY VIRUS; IDENTIFICATION METHOD; MATRIX; NUMERICAL MODEL;

HUMAN IMMUNODEFICIENCY VIRUS;

EID: 84862896501     PISSN: 0006341X     EISSN: 15410420     Source Type: Journal    
DOI: 10.1111/j.1541-0420.2011.01674.x     Document Type: Article

References (19)

1. Bilder, C., Tebbs, J., and Chen, P. (2010). Informative retesting. Journal of the American Statistical Association 105, 942-955.
2. de Finetti, B. (1975). Theory of Probability. A Critical Introductory Treatment, Volume 2. London: John Wiley & Sons.
3. Diaconis, P. (1977). Finite forms of de Finetti's theorem on exchangeability. Synthese 36, 271-281.
4. Dorfman, R. (1943). The detection of defective members of large populations. The Annals of Mathematical Statistics 14, 436-440.
5. Johnson, N. L., Kotz, S., and Wu, X. (1991). Inspection Errors for Attributes in Quality Control. London: Chapman and Hall/CRC.
6. Kim, H., Hudgens, M. G., Dreyfuss, J. M., Westreich, D. J., and Pilcher, C. D. (2007). Comparison of group testing algorithms for case identification in the presence of test error. Biometrics 63, 1152-1163.
7. Koup, R. A., Roederer, M., Lamoreaux, L., Fischer, J., Novik, L., Nason, M. C., Larkin, B. D., Enama, M. E., Ledgerwood, J. E., Bailer, R. T., Mascola, J. R., Nabel, G. J., Graham, B. S., and the VRC 009 and VRC 010 Study Teams. (2010). Priming immunization with DNA augments immunogenicity of recombinant adenoviral vectors for both HIV-1 specific antibody and T-cell responses. PloS ONE 5, e9015, 1-15.
8. Li, F., Malhotra, U., Gilbert, P. B., Hawkins, N. R., Duerr, A. C., McElrath, J. M., Corey, L., and Self, S. G. (2006). Peptide selection for human immunodeficiency virus type 1 CTL-based vaccine evaluation. Vaccine 24, 6893-6904.
9. Lin, H., Ray, S., Tongchusak, S., Reinherz, E., and Brusic, V. (2008). Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research. BMC Immunology 9, 1-13.
10. Madsen, R. (1993). Generalized binomial distributions. Communications in Statistics-Theory and Methods 22, 3065-3086.
11. Malhotra, U., Li, F., Nolin, J., Allison, M., Zhao, H., Mullins, J., Self, S., and McElrath, M. (2007a). Enhanced detection of human immunodeficiency virus type 1 (HIV-1) Nef-specific T cells recognizing multiple variants in early HIV-1 infection. Journal of Virology 81, 5225-5237.
12. Malhotra, U., Nolin, J., Mullins, J., and McElrath, M. (2007b). Comprehensive epitope analysis of cross-clade Gag-specific T-cell responses in individuals with early HIV-1 infection in the US epidemic. Vaccine 25, 381-390.
13. Morel, J. and Neerchal, N. (1997). Clustered binary logistic regression in teratology data using a finite mixture distribution. Statistics in Medicine 16, 2843-2853.
14. Phatarfod, R. M. and Sudbury, A. (1994). The use of a square array scheme in blood testing. Statistics in Medicine 13, 2337-2343.
15. Precopio, M., Butterfield, T., Casazza, J., Little, S., Richman, D., Koup, R., and Roederer, M. (2008). Optimizing peptide matrices for identifying T-cell antigens. Cytometry Part A 73, 1071-1078.
16. Roederer, M. and Koup, R. A. (2003). Optimized determination of T cell epitope responses. Journal of Immunological Methods 274, 221-228.
17. Russell, N., Hudgens, M., Ha, R., Havenar-Daughton, C., and McElrath, M. (2003). Moving to human immunodeficiency virus type 1 vaccine efficacy trials: Defining T cell responses as potential correlates of immunity. The Journal of Infectious Diseases 187, 226-242.
18. Taylor, P. and Flower, D. (2007). Immunoinformatics and computational vaccinology: A brief introduction. In In Silico Immunology, F. Darren and T. Jon (eds), 23-46. New York, NY : Springer US.
19. Yan, J., Yoon, H., Kumar, S., Ramanathan, M., Corbitt, N., Kutzler, M., Dai, A., Boyer, J., and Weiner, D. (2007). Enhanced cellular immune responses elicited by an engineered HIV-1 subtype B consensus-based envelope DNA vaccine. Molecular Therapy 15, 411-421.