Nutrient scavenging activity and antagonistic factors of non-photobiont lichen-associated bacteria: a review

World Journal of Microbiology and Biotechnology

Volumn 32, Issue 4, 2016, Pages 1-11

  Audur Sigurbjornsdottir M ^a,b   Andrésson, Ólafur S ^b   Vilhelmsson, Oddur ^a,b  

^a UNIVERSITY OF AKUREYRI   (Iceland)

^b UNIVERSITY OF ICELAND   (Iceland)

Author keywords

Bacteria; Endothallic; Lichen; Microbiome; Symbiosis

Indexed keywords

BACTERIA; NITROGEN FIXATION; NUTRIENTS; VOLATILE ORGANIC COMPOUNDS;

ANTIBACTERIAL AND ANTIFUNGAL ACTIVITY; ENDOTHALLIC; ENVIRONMENTAL CONTAMINANT; LICHEN; MICROBIOME; RECALCITRANT COMPOUNDS; SCAVENGING ACTIVITIES; SYMBIOSIS;

FUNGI;

ANTIINFECTIVE AGENT; VOLATILE ORGANIC COMPOUND;

HOST PATHOGEN INTERACTION; LICHEN (ORGANISM); METABOLISM; METAGENOME; MICROBIOLOGY; NITROGEN FIXATION; PHYSIOLOGY; PROTEOBACTERIA; SYMBIOSIS;

ANTI-INFECTIVE AGENTS; HOST-PATHOGEN INTERACTIONS; LICHENS; METAGENOME; NITROGEN FIXATION; PROTEOBACTERIA; SYMBIOSIS; VOLATILE ORGANIC COMPOUNDS;

EID: 84959296932     PISSN: 09593993     EISSN: 15730972     Source Type: Journal    
DOI: 10.1007/s11274-016-2019-2     Document Type: Review

References (78)

1. Ahmadjian V (1995) Lichens are more important than you think. Bioscience 45:124
2. Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143–169
3. Arul Jose P, Jebakumar SRD (2013) Non-streptomycete actinomycetes nourish the current microbial antibiotic drug discovery. Front Microbiol. doi:10.3389/fmicb.2013.00240
4. Aschenbrenner IA, Cardinale M, Berg G, Grube M (2014) Microbial cargo: Do bacteria on symbiotic propagules reinforce the microbiome of lichens? Environ Microbiol 16:3743–3752
5. Bates ST, Cropsey GWG, Caporaso JG, Knight R, Fierer N (2011) Bacterial communities associated with the lichen symbiosis. Appl Environ Microbiol 77:1309–1314
6. Beckett RP, Kranner I, Minibayeva FV (2008) Stress physiology and the symbiosis. In: Nash TH (ed) Lichen biology, 2nd edn. Cambridge University Press, New York, pp 134–151
7. Beckett RP, Zavarzina AG, Liers C (2013) Oxidoreductases and cellulases in lichens: possible roles in lichen biology and soil organic matter turnover. Fungal Biol 117:431–438
8. Benner JW, Vitousek PM (2007) Development of a diverse epiphyte community in response to phosphorus fertilization. Ecol Lett 10:628–636
9. Benner JW, Conroy S, Lunch CK, Toyoda N, Vitousek PM (2007) Phosphorus fertilization increases the abundance and nitrogenase activity of the cyanolichen Pseudocypellariacrocata in Hawaiian montane forests. Biotropica 36:400–405
10. Bjelland T, Grube M, Hoem S, Jorgensen SL, Daae FL, Thorseth IH, Ovreas L (2011) Microbial metacommunities in the lichen-rock habitat. Environ Microbiol Rep 3:434–442
11. Büdel B, Scheidegger C (2008) Thallus morhpology and anatomy. In: Nash TH (ed) Lichen biology. Cambridge University Press, New York, pp 40–68
12. Büdel B, Darienko T, Deutschewitz K, Dojani S, Friedl T, Mohr KI, Salisch M, Reisser W, Weber B (2009) Southern African biological soil crusts are ubiquitous and highly diverse in drylands, being restricted by rainfall frequency. Microb Ecol 57(2):229–247
13. Cardinale M, Puglia AM, Grube M (2006) Molecular analysis of lichen-associated bacterial communities. FEMS Microbiol Ecol 57:484–495
14. Cardinale M, de Castro JV Jr, Muller H, Berg G, Grube M (2008) In situ analysis of the bacterial community associated with the reindeer lichen Cladoniaarbuscula reveals predominance of Alphaproteobacteria. FEMS Microbiol Ecol 66:63–71
15. Cardinale M, Grube M Jr, de Castro JV Jr, Mueller H, Berg G (2012a) Bacterial taxa associated with the lung lichen Lobariapulmonaria are differentially shaped by geography and habitat. FEMS Microbiol Lett 329:111–115
16. Cardinale M, Steinova J, Rabensteiner J, Berg G, Grube M (2012b) Age, sun and substrate: triggers of bacterial communities in lichens. Environ Microbiol Rep 4:23–28
17. Cernava T, Aschenbrenner IA, Grube M, Liebminger S, Berg G (2015a) A novel assay for detection of bioactive volatiles evaluated by screening of lichen-associated bacteria. Front Microbiol 6:398
18. Cernava T, Muller H, Aschenbrenner IA, Grube M, Berg G (2015b) Analyzing the antagonistic potential of the lichen microbiome against pathogens by bridging metagenomic with culture studies. Front Microbiol 6:620
19. Chhabra S, Brazil D, Morrissey J, Burke JI, O’Gara F, Dowling DN (2013) Characterization of mineral phosphate solubilization traits from a barley rhizosphere soil functional metagenome. Microbiologyopen 2:717–724
20. Dahlmann L, Persson J, Palmqvist K (2004) Organic and inorganic nitrogen uptake in lichens. Planta 219:459–467
21. Davies J, Wang H, Taylor T, Warabi K, Huang X-H, Andersen RJ (2005) Uncialamycin, a new enediyne antibiotic. Org Lett 7:5233–5236. doi:10.1021/ol052081f
22. Erlacher A, Cernava T, Cardinale M, Soh J, Sensen CW, Grube M, Berg G (2015) Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobariapulmonaria L. Front Microbiol 6:53
23. Farrar JF (1976) The uptake and metabolism of phosphate by the lichen Hypogymniaphysodes. New Phytol 77:127–134
24. Gadd GM (2007) Geomycology: biogeochemical transformations of rocks, minerals, metals and radionuclides by fungi, bioweathering and bioremediation. Mycol Res 111:3–49
25. Goldstein AH (1995) Recent progress in understanding the molecular genetics and biochemistry of calcium phosphate solubilization by gram negative bacteria. Biol Agric Hortic 12(2):185–193
26. González I, Ayuso-Sacido A, Anderson A, Genilloud O (2005) Actinomycetes isolated from lichens: evaluation of their diversity and detection of biosynthetic gene sequences. FEMS Microbiol Ecol 54:401–415
27. Green TGA, Nash TH, Lange OL (2008) Physiological ecology of carbon dioxide exchange. In: Nash TH (ed) Lichen biology, 2nd edn. Cambridge University Press, New York, pp 152–181
28. Grube M, Berg G (2009) Microbial consortia of bacteria and fungi with focus on the lichen symbiosis. Fungal Biol Rev 23:72–85
29. Grube M, Cardinale M, de Castro JV Jr, Mueller H, Berg G (2009) Species-specific structural and functional diversity of bacterial communities in lichen symbioses. ISME J 3:1105–1115
30. Grube M, Koeberl M, Lackner S, Berg C, Berg G (2012) Host–parasite interaction and microbiome response: effects of fungal infections on the bacterial community of the Alpine lichen Solorinacrocea. FEMS Microbiol Ecol 82:472–481
31. Grube M, Cernava T, Soh J, Fuchs S, Aschenbrenner I, Lassek C, Wegner U, Becher D, Riedel K, Sensen CW, Berg G (2015) Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics. ISME J 9:412–424
32. Gryndler M, Hršelová H, Chvátalová I, Jansa J (1998) The effect of selected plant hormones on in vitro proliferation of hyphae of Glomusfistulosum. Biol Plant 41:255–263
33. Hayat R, Ali S, Amara U, Khalid R, Ahmed I (2010) Soil beneficial bacteria and their role in plant growth promotion: a review. Ann Microbiol 60:579–598. doi:10.1007/s13213-010-0117-1
34. Henkel PA, Plotnikova TT (1936) Nitrogen-fixing bacteria in lichens. Izv Ross Akad Nauk Seriya Biol 10:9–10
35. Hodkinson BP, Lutzoni F (2009) A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales. Symbiosis 49:163–180
36. Hodkinson BP, Gottel NR, Schadt CW, Lutzoni F (2012) Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome. Environ Microbiol 14:147–161
37. Honegger R (1991) Functional aspects of the lichen symbiosis. Annu Rev Plant Physiol Plant Mol Biol 42:553–578. doi:10.1146/annurev.pp.42.060191.003005
38. Huneck S (1999) The significance of lichens and their metabolites. Natur Wissenschaften 86:559–570
39. Iskina RY (1938) On nitrogen fixing bacteria in lichens. Isv Biol Inst Permsk 11:133–139
40. Johansson O, Nordin A, Olofsson J, Palmqvist K (2010) Responses of epiphytic lichens to an experimental whole-tree nitrogen-deposition gradient. New Phytol 188:1075–1084
41. Johansson O, Olofsson J, Giesler R, Palmqvist K (2011) Lichen responses to nitrogen and phosphorus additions can be explained by the different symbiont responses. New Phytol 191:795–805
42. Kim MK, Park H, Oh TJ (2014) Antibacterial and antioxidant capacity of polar microorganisms isolated from Arctic lichen Ochrolechia sp. Pol J Microbiol 63:317–322
43. Kneip C, Lockhart P, Voß C, Maier U (2007) Nitrogen fixation in eukaryotes—new models for symbiosis. BMC Evol Biol 7:55–67
44. Lau S, Shao N, Bock R, Jürgens G, De Smet I (2009) Auxin signaling in algal lineages: Fact or myth? Trends Plant Sci 14:182–188. doi:10.1016/j.tplants.2009.01.004
45. Lee YM, Kim EH, Lee HK, Hong SG (2014) Biodiversity and physiological characteristics of Antarctic and Arctic lichens-associated bacteria. World J Microbiol Biotechnol 30:2711–2721
46. Liba CM, Ferrara FIS, Manfio GP, Fantinatti-Garboggini F, Albuquerque RC, Pavan C, Ramos PL, Moreira-Filho CA, Barbosa HR (2006) Nitrogen-fixing chemo-organotrophic bacteria isolated from cyanobacteria-deprived lichens and their ability to solubilize phosphate and to release amino acids and phytohormones. J Appl Microbiol 101:1076–1086
47. McCune B, Caldwell BA (2009) A single phosphorus treatment doubles growth of cyanobaeterial lichen transplants. Ecology 90:567–570. doi:10.1890/08-0344.1
48. Morley SE, Gibson M (2004) Cool temperate rainforest lichens of Victoria, Australia: floristics and distribution. Bryologist 107(1):62–74
49. Muggia L, Klug B, Berg G, Grube M (2013) Localization of bacteria in lichens from Alpine soil crusts by fluorescence in situ hybridization. Appl Soil Ecol 68:20–25
50. Müller K (2001) Pharmaceutically relevant metabolites from lichens. Appl Microbiol Biotechnol 56:9–16
51. Mushegian AA, Peterson CN, Baker CCM, Pringle A (2011) Bacterial diversity across individual lichens. Appl Environ Microbiol 77:4249–4252
52. Nash TH (2008a) Introduction. In: Nash TH (ed) Lichen biology, 2nd edn. Cambridge University Press, Cambridge, pp 1–8
53. Nash TH (2008b) Nitrogen, its metabolism and potential contribution to ecosystems. In: Nash TH (ed) Lichen biology, 2nd edn. Cambridge University Press, New York, pp 216–233
54. Øvstedal DO, Smith RIL (2001) Lichens of Antarctica and South Georgia. Cambrigde University Press, New York, p 411
55. Palmqvist K (2000) Tansley Review No. 117 Carbon economy in lichens. New Phytol 148:11–36
56. Palmqvist K, Dahlman L, Jonsson A, Nash TH (2008) The carbon economy of lichens. In: Nash TH (ed) Lichen biology. Cambridge University Press, New York, pp 182–215
57. Pankratov TA (2012) Acidobacteria in microbial communities of the bog and tundra lichens. Microbiology 81:51–58
58. Panosyan AK, Nikogosyan VG (1966) The presence of Azotobacter in lichens. Akad Nauk Armian SSR Biol Zhurn Armen 19:3–11
59. Portillo MC, Villahermosa D, Corzo A, Gonzalez JM (2011) Microbial community fingerprinting by differential display-denaturing gradient gel electrophoresis. Appl Environ Microbiol 77:351–354. doi:10.1128/AEM.01316-10
60. Printzen C (2008) Uncharted terrain: the phylogeography of arctic and boreal lichens. Plant Ecol Divers 1(2):265–271. doi:10.1080/17550870802328702
61. Printzen C, Fernandez-Mendoza F, Muggia L, Berg G, Grube M (2012) Alphaproteobacterial communities in geographically distant populations of the lichen Cetrariaaculeata. FEMS Microbiol Ecol 82:316–325
62. Richardson AE, Hadobas PA, Hayes JE, O’Hara CP, Simpson RJ (2001) Utilization of phosphorus by pasture plants supplied with myo-inositol hexaphosphate is enhanced by the presence of soil micro-organisms. Plant Soil 229:47–56
63. Rikkinen J (2002) Cyanolichens: an evolutionary overview. In: Rai AN, Bergman B, Rasmussen U (eds) Cyanobacteria in symbiosis. Kluwer Academic Publishers, Dordrecht, pp 31–72
64. Rodríguez H, Fraga R (1999) Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnol Adv 17:319–339. doi:10.1016/S0734-9750(99)00014-2
65. Rodríguez H, Fraga R, Gonzalez T, Bashan Y (2006) Genetics of phosphate solubilization and its potential applications for improving plant growth-promoting bacteria. Plant Soil 287:15–21
66. Sancho LG, Maestre FT, Büdel B (2014) Biological soil crusts in a changing world: introduction to the special issue. Biodivers Conserv 23:1611–1617. doi:10.1007/s10531-014-0727-1
67. Sashidhar B, Podile AR (2010) Mineral phosphate solubilization by rhizosphere bacteria and scope for manipulation of the direct oxidation pathway involving glucose dehydrogenase. J Appl Microbiol 109:1–12
68. Schneider T, Schmid E, de Castro JV Jr, Cardinale M, Eberl L, Grube M, Berg G, Riedel K (2011) Structure and function of the symbiosis partners of the lung lichen (Lobariapulmonaria L. Hoffm.) analyzed by metaproteomics. Proteomics 11:2752–2756
69. Selbmann L, Zucconi L, Ruisi S, Grube M, Cardinale M, Onofri S (2010) Culturable bacteria associated with Antarctic lichens: affiliation and psychrotolerance. Polar Biol 33:71–83
70. Sharma S, Sayyed R, Trivedi M, Gobi T (2013) Phosphate solubilizing microbes: sustainable approach for managing phosphorus deficiency in agricultural soils. Springerplus 2:587
71. Shridhar BS (2012) Review: nitrogen fixing microorganisms. Int J Microbiol Res 3:46–52. doi:10.5829/idosi.ijmr.2012.3.1.61103
72. Sigurbjörnsdóttir MA, Heiðmarsson S, Jónsdóttir AR, Vilhelmsson O (2014) Novel bacteria associated with Arctic seashore lichens have potential roles in nutrient scavenging. Can J Microbiol 60:307–317
73. Sigurbjörnsdóttir MA, Andrésson OS, Vilhelmsson O (2015) Analysis of the Peltigeramembranacea metagenome indicates that lichen-associated bacteria are involved in phosphate solubilization. Microbiol 161:898–996. doi:10.1099/mic.0.000069
74. Smith DC (1960) Studies in the physiology of lichens. Ann Bot 24:186–199
75. Spaepen S, Vanderleyden J, Remans R (2007) Indole-3-acetic acid in microbial and microorganism-plant signaling. FEMS Microbiol Rev 31:425–448. doi:10.1111/j.1574-6976.2007.00072.x
76. Uphof JCT (1925) Purple bacteria as symbionts of a lichen. Science 61(1568):67.doi:10.1126/science.61.1568.67
77. Yamamura H, Ashizawa H, Nakagawa Y, Hamada M, Ishida Y, Otoguro M, Tamura T, Hayakawa M (2011) Actinomycetospora iriomotensis sp. nov., a novel actinomycete isolated from a lichen sample. J Antibiot 64:289–292
78. Zhao K, Penttinen P, Zhang X, Ao X, Liu M, Yu X, Chen Q (2014) Maize rhizosphere in Sichuan, China, hosts plant growth promoting Burkholderiacepacia with phosphate solubilizing and antifungal abilities. Microbiol Res 169:76–82