Localization of bacteria in lichens from Alpine soil crusts by fluorescence in situ hybridization

Applied Soil Ecology

Volumn 68, Issue , 2013, Pages 20-25

  Muggia, Lucia ^a,b   Klug, Barbara ^a   Berg, Gabriele ^c   Grube, Martin ^a  

^a UNIVERSITY OF GRAZ   (Austria)

^b UNIVERSITY OF TRIESTE   (Italy)

^c GRAZ UNIVERSITY OF TECHNOLOGY   (Austria)

Author keywords

Acidobacteria; Alphaproteobacteria; Confocal microscopy; FISH; Thallus structures

Indexed keywords

ACIDOBACTERIA; ALGAE; ALPHAPROTEOBACTERIA; ARTHRORHAPHIS CITRINELLA; BACTERIA (MICROORGANISMS); BAEOMYCES PLACOPHYLLUS; BAEOMYCES RUFUS; ICMADOPHILA ERICETORUM; PSORA DECIPIENS; TRAPELIOPSIS GRANULOSA;

EID: 84876468192     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2013.03.008     Document Type: Article

References (30)

1. Amann R.I., Binder B.J., Olson R.J., Chrisholm S.W., Devereux R., Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analysing mixed microbial population. Appl. Environ. Microbiol. 1990, 56:1919-1925.
2. Asta J., Orry F., Toutain F., Souchier B., Villemin G. Micromorphological and ultrastructural investigation of the lichen-soil interface. Soil Biol. Biochem. 2001, 33:323-337.
3. Bates S., Nash T.H., Sweat K.G., Garcia-Pichel F. Fungal communities of lichen-dominated biological soil crust, diversity, relative microbial biomass, and their relationship to disturbance and crust cover. J. Arid Environ. 2011, 74:1192-1199.
4. Belnap J. Impacts of off-road vehicles on nitrogen cycles in biological soil crusts, resistance in different U.S. deserts. J. Arid Environ. 2002, 52:155-165.
5. Beymer R.J., Klopatek J.M. Potential contribution of carbon by microphytic crusts in pinyon-juniper woodlands. Arid Soil Res. Rehabil. 1991, 5:187-198.
6. Belnap J., Büdel B., Lange O.L. Biological soil crusts, characteristics and distribution. Biological Soil Crusts: Structure, Function and Management 2003, 3-30. Springer, Berlin. J. Belnap, O.L. Lange (Eds.).
7. Bjelland T., Grube M., Hoem S., Jorgensen S.L., Daae F.L., Thorseth I.H., Øvreås L. Microbial metacommunities in the lichen-rock habitat. Env. Microb. Rep. 2010, 3:434-442.
8. Cardinale M., Vieira de Castro J., Müller H., Berg G., Grube M. In situ analysis of the bacteria community associated with the reindeer lichen Cladonia arbuscula reveals predominance of alphaproteobacteria. FEMS Microbiol. Ecol. 2008, 66:63-71.
9. Cardinale M., Steinová J., Rabensteiner J., Berg G., Grube M. Age, sun, and substrate: triggers of bacterial communities in lichens. Environ. Microbiol. Rep. 2011, 4:23-28.
10. Daims H., Brühl A., Amann R., Schleifer K.H., Wagner M. The domain-specific probe EUB338 is sufficient for the detection of all Bacteria. Development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 1999, 22:434-444.
11. Garcia-Pichel F., Johnson S.L., Youngkin D., Belnap J. Small-scale vertical distribution of bacteria biomass and diversity in biological soil crusts from arid lands in the Colorado Plateau. Microbiol. Ecol. 2003, 46:312-321.
12. Grube M., Cardinale M., Vieira de Castro J., Müller H., Berg G. Species-specific structural and functional diversity of bacterial communities in lichen symbiosis. ISME J. 2009, 3:1105-1115.
13. Grube M., Rabensteiner J., Grube U., Muggia L. Architecture of biocomplexity: lichen-dominated soil crust and mats. Microbial Mats 2010, 343-357. Springer, London. J. Seckbach, A. Oren (Eds.).
14. Harper K.T., Belnap J. The influence of biological soil crusts on mineral uptake by associated vascular plants. J. Arid Environ. 2001, 47:347-357.
15. Jones C.G., Lawton J.H., Shachak M. Positive and negative effects of organisms as physical ecosystem engineers. Ecology 1997, 78:1946-1957.
16. Klug B., Rodler C., Koller M., Wimmer G., Kessler H.H., Grube M., Santigli E. Oral biofilm analyse palatal expander durch fluoreszenz in situ hybridisierung und konfokale laser scanning mikroskopie. J. Visualized Exp.: JoVE 2011, 56. 10.3791/2967.
17. Lalley J.S., Viles H.A., Henschel J.R., Lalley V. Lichen-dominated soil crusts as arthropod habitat in warm deserts. J. Arid Environ. 2006, 67:579-593.
18. Manz W., Amann R., Ludwig W., Wagner M., Schleifer K.H. Phylogenetic oligonucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 1992, 15:593-600.
19. Meier H., Amann R.I., Ludwig W., Schleifer K.H. Specific oligonucleotide probes for in situ detection of a major group of gram-positive bacteria with low DNA G+C content. Syst. Appl. Microbiol. 1999, 22:186-196.
20. Meisinger D.B., Zimmermann J., Ludwig W., Schleifer K.H., Wanner G., Schmid M., Bennet P.C., Engel A.S., Lee N.M. In situ detection of novel Acidobacteria in microbial mats from a chemolithoautotrophically based cave ecosystem (Lower Kane Cave, WY, USA). Environ. Microbiol. 2007, 9:1523-1534.
21. Neef, A., 1997. Anwendung der in situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen. Doctoral Thesis (Technische Universität München).
22. Pankratov T.A. Acidobacteria in microbial communities of the bog and tundra lichens. Exp. Art. 2012, 81:51-58.
23. Redfield E., Barns S.M., Belnap J., Daane L.L., Kuske C.R. Comparative diversity and comparison of cyanobacteria in three predominant soil crusts of Colorado Plateau. FEMS Microbiol. Ecol. 2002, 40:55-63.
24. Shiraishi F., Zippel B., Neu T.R., Arp G. In situ detection of bacteria in calcified biofilms usin FISH and CARD-FISH. J. Microbiol. Methods 2008, 75:103-108.
25. Smith C.W., Aptroot A., Coppins B.J., Fletcher A., Gilbert O.L., James P.W., Wolseley P.A. The Lichens of Great Britain and Ireland 2009, British Lichen Society, London.
26. Türk R., Gärtner G. Biological soil crusts of the subalpine, Alpine and nival areas in the Alps. Biological Soil Crusts: Structure, Function and Management 2003, 67-73. Springer, Berlin. J. Belnap, O.L. Lange (Eds.).
27. Van Haluwyn, C., Asta, J., Boissière, J.C., Clerc, P., 2012. Guide des lichens de France. Lichens des sols. Belin, p. 224.
28. Wallner G., Almann R., Beisker W. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 1993, 14:136-143.
29. Wirth V. Flechtenflora 2. Auflage 1995, Ulmer, Stuttgart.
30. Wu L., Lan S., Zhang D., Hu C. Small-scale vertical distribution of algae and structure of lichen soil crusts. Soil. Microbes 2011, 62:715-724.