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Volumn 12, Issue 2, 2016, Pages 1-14

Association of transcriptome-wide sequence variation with climate gradients in valley oak (Quercus lobata)

Author keywords

Climate; Natural selection; Quercus lobata; Single nucleotide polymorphism; Transcriptome

Indexed keywords


EID: 84958981906     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-016-0975-1     Document Type: Article
Times cited : (26)

References (70)
  • 1
    • 84884948826 scopus 로고    scopus 로고
    • Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea
    • COI: 1:CAS:528:DC%2BC3sXhvFeisbfI, PID: 23934884
    • Alberto FJ, Derory J, Boury C, Frigerio J-M, Zimmermann NE, Kremer A (2013) Imprints of natural selection along environmental gradients in phenology-related genes of Quercus petraea. Genetics 195:495–512. doi:10.1534/genetics.113.153783
    • (2013) Genetics , vol.195 , pp. 495-512
    • Alberto, F.J.1    Derory, J.2    Boury, C.3    Frigerio, J.-M.4    Zimmermann, N.E.5    Kremer, A.6
  • 2
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology
    • COI: 1:CAS:528:DC%2BD3cXjtFSlsbc%3D, PID: 10802651
    • Ashburner M et al (2000) Gene ontology: tool for the unification of biology. Nat Genet 25:25–29
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 3
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
    • COI: 1:CAS:528:DC%2BC3cXjvVShur8%3D, PID: 20336072
    • Atwell S et al (2010) Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465:627–631. doi:10.1038/nature08800
    • (2010) Nature , vol.465 , pp. 627-631
    • Atwell, S.1
  • 4
    • 0029199341 scopus 로고
    • A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity
    • COI: 1:STN:280:DyaK2MzjtFGhug%3D%3D, PID: 7607457
    • Balding D, Nichols R (1995) A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity. Genetica 96:3–12. doi:10.1007/bf01441146
    • (1995) Genetica , vol.96 , pp. 3-12
    • Balding, D.1    Nichols, R.2
  • 5
    • 84867868500 scopus 로고    scopus 로고
    • Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements
    • COI: 1:CAS:528:DC%2BC38XhsFWkurnE, PID: 22538991
    • Barrett LW, Fletcher S, Wilton SD (2012) Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements. Cell Mol Life Sci 69:3613–3634. doi:10.1007/s00018-012-0990-9
    • (2012) Cell Mol Life Sci , vol.69 , pp. 3613-3634
    • Barrett, L.W.1    Fletcher, S.2    Wilton, S.D.3
  • 6
    • 35948940895 scopus 로고    scopus 로고
    • Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans
    • PID: 17988176
    • Begun DJ et al (2007) Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Plos Biol 5:e310. doi:10.1371/journal.pbio.0050310
    • (2007) Plos Biol , vol.5 , pp. 310
    • Begun, D.J.1
  • 7
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol 57:289–300. doi:10.2307/2346101
    • (1995) J R Stat Soc Ser B Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 8
    • 0026499092 scopus 로고
    • Partialling out the spatial component of ecological variation
    • Borcard D, Legendre P, Drapeau P (1992) Partialling out the spatial component of ecological variation. Ecology 73:1045–1055. doi:10.2307/1940179
    • (1992) Ecology , vol.73 , pp. 1045-1055
    • Borcard, D.1    Legendre, P.2    Drapeau, P.3
  • 9
    • 6344279807 scopus 로고    scopus 로고
    • Nucleotide diversity and linkage disequilibrium in loblolly pine
    • COI: 1:CAS:528:DC%2BD2cXpsVSgu70%3D, PID: 15477602
    • Brown GR, Gill GP, Kuntz RJ, Langley CH, Neale DB (2004) Nucleotide diversity and linkage disequilibrium in loblolly pine. Proc Natl Acad Sci U S A 101:15255–15260. doi:10.1073/pnas.0404231101
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 15255-15260
    • Brown, G.R.1    Gill, G.P.2    Kuntz, R.J.3    Langley, C.H.4    Neale, D.B.5
  • 10
    • 78650970907 scopus 로고    scopus 로고
    • SNP discovery in the bovine milk transcriptome using RNA-Seq technology
    • PID: 21057797
    • Cánovas A, Rincon G, Islas-Trejo A, Wickramasinghe S, Medrano J (2010) SNP discovery in the bovine milk transcriptome using RNA-Seq technology. Mamm Genome 21:592–598. doi:10.1007/s00335-010-9297-z
    • (2010) Mamm Genome , vol.21 , pp. 592-598
    • Cánovas, A.1    Rincon, G.2    Islas-Trejo, A.3    Wickramasinghe, S.4    Medrano, J.5
  • 12
    • 85019217449 scopus 로고    scopus 로고
    • Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks
    • PID: 26215102
    • Cokus SJ, Gugger PF, Sork VL (2015) Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks. BMC Genomics 16:552
    • (2015) BMC Genomics , vol.16 , pp. 552
    • Cokus, S.J.1    Gugger, P.F.2    Sork, V.L.3
  • 13
    • 77956491134 scopus 로고    scopus 로고
    • Using environmental correlations to identify loci underlying local adaptation
    • COI: 1:CAS:528:DC%2BC3cXhsFOntrfF, PID: 20516501
    • Coop G, Witonsky D, Di Rienzo A, Pritchard JK (2010) Using environmental correlations to identify loci underlying local adaptation. Genetics 185:1411–1423. doi:10.1534/genetics.110.114819
    • (2010) Genetics , vol.185 , pp. 1411-1423
    • Coop, G.1    Witonsky, D.2    Di Rienzo, A.3    Pritchard, J.K.4
  • 14
    • 0001957456 scopus 로고
    • Pleistocene biogeography of temperate deciduous forests
    • Davis MB (1976) Pleistocene biogeography of temperate deciduous forests. Geosci Man 13:13–26
    • (1976) Geosci Man , vol.13 , pp. 13-26
    • Davis, M.B.1
  • 15
    • 84874409839 scopus 로고    scopus 로고
    • Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations
    • PID: 23294205
    • De Mita S, Thuillet A-C, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y (2013) Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Mol Ecol 22:1383–1399. doi:10.1111/mec.12182
    • (2013) Mol Ecol , vol.22 , pp. 1383-1399
    • De Mita, S.1    Thuillet, A.-C.2    Gay, L.3    Ahmadi, N.4    Manel, S.5    Ronfort, J.6    Vigouroux, Y.7
  • 16
    • 33646695674 scopus 로고    scopus 로고
    • Transcriptome analysis of bud burst in sessile oak (Quercus petraea)
    • COI: 1:CAS:528:DC%2BD28XmslSis7k%3D, PID: 16684234
    • Derory J et al (2006) Transcriptome analysis of bud burst in sessile oak (Quercus petraea). New Phytol 170:723–738. doi:10.1111/J.1469-8137.2006.01721.X
    • (2006) New Phytol , vol.170 , pp. 723-738
    • Derory, J.1
  • 17
    • 77951499912 scopus 로고    scopus 로고
    • Contrasting relationships between the diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks
    • COI: 1:CAS:528:DC%2BC3cXkvFers78%3D, PID: 19812610
    • Derory J et al (2010) Contrasting relationships between the diversity of candidate genes and variation of bud burst in natural and segregating populations of European oaks. Heredity 104:438–448. doi:10.1038/Hdy.2009.134
    • (2010) Heredity , vol.104 , pp. 438-448
    • Derory, J.1
  • 18
    • 77956091699 scopus 로고    scopus 로고
    • Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae)
    • COI: 1:CAS:528:DC%2BC3cXht1aqsrzE, PID: 20723060
    • Eckert AJ, Bower AD, González-Martínez SC, Wegrzyn JL, Coop G, Neale DB (2010a) Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae). Mol Ecol 19:3789–3805. doi:10.1111/j.1365-294X.2010.04698.x
    • (2010) Mol Ecol , vol.19 , pp. 3789-3805
    • Eckert, A.J.1    Bower, A.D.2    González-Martínez, S.C.3    Wegrzyn, J.L.4    Coop, G.5    Neale, D.B.6
  • 19
    • 77956090475 scopus 로고    scopus 로고
    • Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae)
    • COI: 1:CAS:528:DC%2BC3cXhsFOnu7vL, PID: 20439779
    • Eckert AJ, van Heerwaarden J, Wegrzyn JL, Nelson CD, R-I J, González-Martínez SC, Neale DB (2010b) Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae). Genetics 185:969–982. doi:10.1534/genetics.110.115543
    • (2010) Genetics , vol.185 , pp. 969-982
    • Eckert, A.J.1    van Heerwaarden, J.2    Wegrzyn, J.L.3    Nelson, C.D.4    R-I, J.5    González-Martínez, S.C.6    Neale, D.B.7
  • 20
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • COI: 1:CAS:528:DC%2BC3cXht1WhtbzM, PID: 20709691
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460–2461. doi:10.1093/bioinformatics/btq461
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 22
    • 84891782659 scopus 로고    scopus 로고
    • Pfam: the protein families database
    • COI: 1:CAS:528:DC%2BC2cXos1al, PID: 24288371
    • Finn RD et al (2014) Pfam: the protein families database. Nucleic Acids Res 42:D222–D230. doi:10.1093/nar/gkt1223
    • (2014) Nucleic Acids Res , vol.42 , pp. 222-230
    • Finn, R.D.1
  • 23
    • 84879335655 scopus 로고    scopus 로고
    • Testing for associations between loci and environmental gradients using latent factor mixed models
    • COI: 1:CAS:528:DC%2BC3sXpvFersbs%3D, PID: 23543094
    • Frichot E, Schoville SD, Bouchard G, François O (2013) Testing for associations between loci and environmental gradients using latent factor mixed models. Mol Biol Evol 30:1687–1699. doi:10.1093/molbev/mst063
    • (2013) Mol Biol Evol , vol.30 , pp. 1687-1699
    • Frichot, E.1    Schoville, S.D.2    Bouchard, G.3    François, O.4
  • 24
    • 79959437696 scopus 로고    scopus 로고
    • Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity
    • COI: 1:CAS:528:DC%2BC3MXnvVKgsLg%3D, PID: 21685083
    • Furlotte NA, Kang HM, Ye C, Eskin E (2011) Mixed-model coexpression: calculating gene coexpression while accounting for expression heterogeneity. Bioinformatics 27:i288–i294. doi:10.1093/bioinformatics/btr221
    • (2011) Bioinformatics , vol.27 , pp. i288-i294
    • Furlotte, N.A.1    Kang, H.M.2    Ye, C.3    Eskin, E.4
  • 25
    • 79951748075 scopus 로고    scopus 로고
    • SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing
    • COI: 1:CAS:528:DC%2BC3MXks1Khsro%3D, PID: 21429165
    • Geraldes A et al (2011) SNP discovery in black cottonwood (Populus trichocarpa) by population transcriptome resequencing. Mol Ecol Resour 11:81–92. doi:10.1111/j.1755-0998.2010.02960.x
    • (2011) Mol Ecol Resour , vol.11 , pp. 81-92
    • Geraldes, A.1
  • 26
    • 33750208632 scopus 로고    scopus 로고
    • Contrasting patterns of historical colonization in white oaks (Quercus spp.) in California and Europe
    • COI: 1:CAS:528:DC%2BD28XhtlSmsrnP, PID: 17054504
    • Grivet D, Deguilloux M-F, Petit RJ, Sork VL (2006) Contrasting patterns of historical colonization in white oaks (Quercus spp.) in California and Europe. Mol Ecol 15:4085–4093
    • (2006) Mol Ecol , vol.15 , pp. 4085-4093
    • Grivet, D.1    Deguilloux, M.-F.2    Petit, R.J.3    Sork, V.L.4
  • 27
    • 84876783965 scopus 로고    scopus 로고
    • Influence of late quaternary climate change on present patterns of genetic variation in valley oak, Quercus lobata Née
    • PID: 23802553
    • Gugger PF, Ikegami M, Sork VL (2013) Influence of late quaternary climate change on present patterns of genetic variation in valley oak, Quercus lobata Née. Mol Ecol 22:3598–3612. doi:10.1111/mec.12317
    • (2013) Mol Ecol , vol.22 , pp. 3598-3612
    • Gugger, P.F.1    Ikegami, M.2    Sork, V.L.3
  • 28
    • 84883774412 scopus 로고    scopus 로고
    • Robust identification of local adaptation from allele frequencies
    • PID: 23821598
    • Günther T, Coop G (2013) Robust identification of local adaptation from allele frequencies. Genetics 195:205–220. doi:10.1534/genetics.113.152462
    • (2013) Genetics , vol.195 , pp. 205-220
    • Günther, T.1    Coop, G.2
  • 29
    • 55349135251 scopus 로고    scopus 로고
    • Detecting the genetic signature of natural selection in human populations: models, methods, and data
    • PID: 20622977
    • Hancock AM, Di Rienzo A (2008) Detecting the genetic signature of natural selection in human populations: models, methods, and data. Annu Rev Anthropol 37:197–217
    • (2008) Annu Rev Anthropol , vol.37 , pp. 197-217
    • Hancock, A.M.1    Di Rienzo, A.2
  • 30
    • 77957126038 scopus 로고    scopus 로고
    • Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis)
    • PID: 20663060
    • Holliday JA, Ritland K, Aitken SN (2010) Widespread, ecologically relevant genetic markers developed from association mapping of climate-related traits in Sitka spruce (Picea sitchensis). New Phytol 188:501–514. doi:10.1111/j.1469-8137.2010.03380.x
    • (2010) New Phytol , vol.188 , pp. 501-514
    • Holliday, J.A.1    Ritland, K.2    Aitken, S.N.3
  • 31
    • 0027047220 scopus 로고
    • Predicting the timing of budburst in temperate trees
    • Hunter AF, Lechowicz MJ (1992) Predicting the timing of budburst in temperate trees. J Appl Ecol 29:597–604
    • (1992) J Appl Ecol , vol.29 , pp. 597-604
    • Hunter, A.F.1    Lechowicz, M.J.2
  • 32
    • 80053526616 scopus 로고    scopus 로고
    • Spatial genetic structure of a symbiotic beetle-fungal system: toward multi-taxa integrated landscape genetics
    • COI: 1:CAS:528:DC%2BC3MXhtlOlt7fP, PID: 21991309
    • James PMA, Coltman DW, Murray BW, Hamelin RC, Sperling FAH (2011) Spatial genetic structure of a symbiotic beetle-fungal system: toward multi-taxa integrated landscape genetics. PLoS One 6:e25359. doi:10.1371/journal.pone.0025359
    • (2011) PLoS One , vol.6 , pp. 25359
    • James, P.M.A.1    Coltman, D.W.2    Murray, B.W.3    Hamelin, R.C.4    Sperling, F.A.H.5
  • 33
    • 84899518211 scopus 로고    scopus 로고
    • InterProScan 5: genome-scale protein function classification
    • COI: 1:CAS:528:DC%2BC2cXmvFCjsr4%3D, PID: 24451626
    • Jones P et al (2014) InterProScan 5: genome-scale protein function classification. Bioinformatics 30:1236–1240. doi:10.1093/bioinformatics/btu031
    • (2014) Bioinformatics , vol.30 , pp. 1236-1240
    • Jones, P.1
  • 34
    • 45149105926 scopus 로고    scopus 로고
    • Efficient control of population structure in model organism association mapping
    • PID: 18385116
    • Kang HM, Zaitlen NA, Wade CM, Kirby A, Heckerman D, Daly MJ, Eskin E (2008) Efficient control of population structure in model organism association mapping. Genetics 178:1709–1723. doi:10.1534/genetics.107.080101
    • (2008) Genetics , vol.178 , pp. 1709-1723
    • Kang, H.M.1    Zaitlen, N.A.2    Wade, C.M.3    Kirby, A.4    Heckerman, D.5    Daly, M.J.6    Eskin, E.7
  • 35
    • 77950301214 scopus 로고    scopus 로고
    • Variance component model to account for sample structure in genome-wide association studies
    • COI: 1:CAS:528:DC%2BC3cXivVCisb8%3D, PID: 20208533
    • Kang HM et al (2010) Variance component model to account for sample structure in genome-wide association studies. Nat Genet 42:348–354
    • (2010) Nat Genet , vol.42 , pp. 348-354
    • Kang, H.M.1
  • 36
    • 11444251420 scopus 로고    scopus 로고
    • Population structure in Arabidopsis lyrata: evidence for divergent selection on trichome production
    • PID: 15696760
    • Karkkäinen K, Løe G, ÅGren J (2004) Population structure in Arabidopsis lyrata: evidence for divergent selection on trichome production. Evolution 58:2831–2836. doi:10.1111/j.0014-3820.2004.tb01634.x
    • (2004) Evolution , vol.58 , pp. 2831-2836
    • Karkkäinen, K.1    Løe, G.2    ÅGren, J.3
  • 37
    • 80051500868 scopus 로고    scopus 로고
    • Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar Populus balsamifera L
    • Keller SR, Levsen N, Ingvarsson PK, Olson MS, Tiffin P (2011) Local selection across a latitudinal gradient shapes nucleotide diversity in balsam poplar Populus balsamifera L. Genetics. doi:10.1534/genetics.1111.128041
    • (2011) Genetics
    • Keller, S.R.1    Levsen, N.2    Ingvarsson, P.K.3    Olson, M.S.4    Tiffin, P.5
  • 38
    • 27144480367 scopus 로고    scopus 로고
    • Pollen limitation of plant reproduction: pattern and process
    • Knight TM et al (2005) Pollen limitation of plant reproduction: pattern and process. Annu Rev Ecol Evol Syst 36:467–497. doi:10.1146/annurev.ecolsys.36.102403.115320
    • (2005) Annu Rev Ecol Evol Syst , vol.36 , pp. 467-497
    • Knight, T.M.1
  • 39
    • 84862235903 scopus 로고    scopus 로고
    • Genomics of Fagaceae
    • Kremer A et al (2012) Genomics of Fagaceae. Tree Genetics Genomes 8:583–610. doi:10.1007/s11295-012-0498-3
    • (2012) Tree Genetics Genomes , vol.8 , pp. 583-610
    • Kremer, A.1
  • 40
    • 84868207604 scopus 로고    scopus 로고
    • Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate
    • PID: 22857709
    • Lasky JR, Des Marais DL, McKay JK, Richards JH, Juenger TE, Keitt TH (2012) Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate. Mol Ecol 21:5512–5529. doi:10.1111/j.1365-294X.2012.05709.x
    • (2012) Mol Ecol , vol.21 , pp. 5512-5529
    • Lasky, J.R.1    Des Marais, D.L.2    McKay, J.K.3    Richards, J.H.4    Juenger, T.E.5    Keitt, T.H.6
  • 41
    • 84906751680 scopus 로고    scopus 로고
    • Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana
    • PID: 24850899
    • Lasky JR et al (2014) Natural variation in abiotic stress responsive gene expression and local adaptation to climate in Arabidopsis thaliana. Mol Biol Evol 31:2283–2296. doi:10.1093/molbev/msu170
    • (2014) Mol Biol Evol , vol.31 , pp. 2283-2296
    • Lasky, J.R.1
  • 42
    • 77955765927 scopus 로고    scopus 로고
    • Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data
    • PID: 21565094
    • Legendre P, Fortin M-J (2010) Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data. Mol Ecol Resour 10:831–844. doi:10.1111/j.1755-0998.2010.02866.x
    • (2010) Mol Ecol Resour , vol.10 , pp. 831-844
    • Legendre, P.1    Fortin, M.-J.2
  • 44
    • 84890260477 scopus 로고    scopus 로고
    • Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes
    • COI: 1:STN:280:DC%2BC2c3hvFKgtQ%3D%3D, PID: 24290377
    • Lohmueller Kirk E et al (2013) Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes. Am J Hum Genet 93:1072–1086. doi:10.1016/j.ajhg.2013.11.005
    • (2013) Am J Hum Genet , vol.93 , pp. 1072-1086
    • Lohmueller Kirk, E.1
  • 45
    • 84861859562 scopus 로고    scopus 로고
    • Predicting species responses to climate change: demography and climate microrefugia in California valley oak (Quercus lobata)
    • McLaughlin BC, Zavaleta ES (2012) Predicting species responses to climate change: demography and climate microrefugia in California valley oak (Quercus lobata). Glob Chang Biol 18:2301–2312. doi:10.1111/j.1365-2486.2011.02630.x
    • (2012) Glob Chang Biol , vol.18 , pp. 2301-2312
    • McLaughlin, B.C.1    Zavaleta, E.S.2
  • 46
    • 3042745450 scopus 로고    scopus 로고
    • Association genetics of complex traits in conifers
    • COI: 1:CAS:528:DC%2BD2cXlsVSnur8%3D, PID: 15231277
    • Neale DB, Savolainen O (2004) Association genetics of complex traits in conifers. Trends Plant Sci 9:325–330. doi:10.1016/J.Plants.2004.05.006
    • (2004) Trends Plant Sci , vol.9 , pp. 325-330
    • Neale, D.B.1    Savolainen, O.2
  • 47
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • COI: 1:CAS:528:DyaL3cXitVWn, PID: 291943
    • Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci U S A 76:5269–5273
    • (1979) Proc Natl Acad Sci U S A , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 48
    • 0015990369 scopus 로고
    • Sample variances of heterozygosity and genetic diversity
    • COI: 1:STN:280:DyaE2c7ktlCiuw%3D%3D, PID: 4822472
    • Nei M, Roychoudhury AK (1974) Sample variances of heterozygosity and genetic diversity. Genetics 76:379–390
    • (1974) Genetics , vol.76 , pp. 379-390
    • Nei, M.1    Roychoudhury, A.K.2
  • 49
    • 0024221479 scopus 로고
    • A model of leaf budding and development for a mature Quercus forest
    • Nizinski JJ, Saugier B (1988) A model of leaf budding and development for a mature Quercus forest. J Appl Ecol 25:643–652
    • (1988) J Appl Ecol , vol.25 , pp. 643-652
    • Nizinski, J.J.1    Saugier, B.2
  • 50
    • 0033083558 scopus 로고    scopus 로고
    • On the variation explained by ordination and constrained ordination axes
    • Økland RH (1999) On the variation explained by ordination and constrained ordination axes. J Veg Sci 10:131–136
    • (1999) J Veg Sci , vol.10 , pp. 131-136
    • Økland, R.H.1
  • 51
    • 85066388326 scopus 로고    scopus 로고
    • Oksanen J et al. (2015) vegan: Community Ecology Package, 2.3
    • Oksanen J et al. (2015) vegan: Community Ecology Package, 2.3 edn.
  • 52
    • 84862759230 scopus 로고    scopus 로고
    • Influence of environmental heterogeneity on genetic diversity and structure in an endemic southern Californian oak
    • PID: 22548448
    • Ortego J, Riordan EC, Gugger PF, Sork VL (2012) Influence of environmental heterogeneity on genetic diversity and structure in an endemic southern Californian oak. Mol Ecol 21:3210–3223. doi:10.1111/j.1365-294X.2012.05591.x
    • (2012) Mol Ecol , vol.21 , pp. 3210-3223
    • Ortego, J.1    Riordan, E.C.2    Gugger, P.F.3    Sork, V.L.4
  • 53
    • 24644514599 scopus 로고    scopus 로고
    • Identification of adaptation-specific differences in mRNA expression of sessile and pedunculate oak based on osmotic-stress-induced genes
    • COI: 1:CAS:528:DC%2BD2MXhtF2qtrjE, PID: 16076780
    • Porth I, Koch M, Berenyi M, Burg A, Burg K (2005) Identification of adaptation-specific differences in mRNA expression of sessile and pedunculate oak based on osmotic-stress-induced genes. Tree Physiol 25:1317–1329
    • (2005) Tree Physiol , vol.25 , pp. 1317-1329
    • Porth, I.1    Koch, M.2    Berenyi, M.3    Burg, A.4    Burg, K.5
  • 55
    • 84876847154 scopus 로고    scopus 로고
    • All SNPs are not created equal: genome-wide association studies reveal a consistent pattern of enrichment among functionally annotated SNPs
    • COI: 1:CAS:528:DC%2BC3sXnt1aqsrg%3D, PID: 23637621
    • Schork AJ et al (2013) All SNPs are not created equal: genome-wide association studies reveal a consistent pattern of enrichment among functionally annotated SNPs. PLoS Genet 9:e1003449. doi:10.1371/journal.pgen.1003449
    • (2013) PLoS Genet , vol.9 , pp. 1003449
    • Schork, A.J.1
  • 56
    • 84890876356 scopus 로고    scopus 로고
    • Genetic isolation by environment or distance: which pattern of gene flow is most common?
    • COI: 1:CAS:528:DC%2BC2cXkvFCn, PID: 24111567
    • Sexton JP, Hangartner SB, Hoffmann AA (2014) Genetic isolation by environment or distance: which pattern of gene flow is most common? Evolution 68:1–15. doi:10.1111/evo.12258
    • (2014) Evolution , vol.68 , pp. 1-15
    • Sexton, J.P.1    Hangartner, S.B.2    Hoffmann, A.A.3
  • 57
    • 77956071665 scopus 로고    scopus 로고
    • Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change
    • PID: 20723054
    • Sork VL, Davis FW, Westfall R, Flint A, Ikegami M, Wang H, Grivet D (2010) Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change. Mol Ecol 19:3806–3823. doi:10.1111/j.1365-294X.2010.04726.x
    • (2010) Mol Ecol , vol.19 , pp. 3806-3823
    • Sork, V.L.1    Davis, F.W.2    Westfall, R.3    Flint, A.4    Ikegami, M.5    Wang, H.6    Grivet, D.7
  • 58
    • 84880141022 scopus 로고    scopus 로고
    • Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate
    • Sork VL, Aitken SN, Dyer RJ, Eckert AJ, Legendre P, Neale DB (2013) Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate. Tree Genetics Genomes 9:901–911. doi:10.1007/s11295-013-0596-x
    • (2013) Tree Genetics Genomes , vol.9 , pp. 901-911
    • Sork, V.L.1    Aitken, S.N.2    Dyer, R.J.3    Eckert, A.J.4    Legendre, P.5    Neale, D.B.6
  • 59
    • 84955138961 scopus 로고    scopus 로고
    • Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata Née (Fagaceae)
    • Sork VL, Squire KC, Gugger PF, Levy E, Steele S, Eckert AJ (2016) Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata Née (Fagaceae). Am J Bot 103:1–13
    • (2016) Am J Bot , vol.103 , pp. 1-13
    • Sork, V.L.1    Squire, K.C.2    Gugger, P.F.3    Levy, E.4    Steele, S.5    Eckert, A.J.6
  • 60
    • 82955189244 scopus 로고    scopus 로고
    • Ecophysiological and transcriptomic responses of oak (Quercus robur) to long-term drought exposure and rewatering
    • Spieß N et al (2012) Ecophysiological and transcriptomic responses of oak (Quercus robur) to long-term drought exposure and rewatering. Environ Exp Bot 77:117–126. doi:10.1016/j.envexpbot.2011.11.010
    • (2012) Environ Exp Bot , vol.77 , pp. 117-126
    • Spieß, N.1
  • 61
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • COI: 1:CAS:528:DC%2BD3sXmtlyktbY%3D, PID: 12883005
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100:9440–9445
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 62
    • 84875210714 scopus 로고    scopus 로고
    • Mixed models can correct for population structure for genomic regions under selection
    • COI: 1:CAS:528:DC%2BC3sXivFyjtrk%3D, PID: 23438871
    • Sul JH, Eskin E (2013) Mixed models can correct for population structure for genomic regions under selection. Nat Rev Genet 14:300–300
    • (2013) Nat Rev Genet , vol.14 , pp. 300
    • Sul, J.H.1    Eskin, E.2
  • 63
    • 38549144806 scopus 로고    scopus 로고
    • The Arabidopsis Information Resource (TAIR): gene structure and function annotation
    • COI: 1:CAS:528:DC%2BD1cXhtVWjsbs%3D, PID: 17986450
    • Swarbreck D et al (2008) The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res 36:D1009–D1014. doi:10.1093/nar/gkm965
    • (2008) Nucleic Acids Res , vol.36 , pp. 1009-1014
    • Swarbreck, D.1
  • 64
    • 0022843649 scopus 로고
    • Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis
    • ter Braak CJF (1986) Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis. Ecology 67:1167–1179. doi:10.2307/1938672
    • (1986) Ecology , vol.67 , pp. 1167-1179
    • ter Braak, C.J.F.1
  • 66
    • 57749195712 scopus 로고    scopus 로고
    • RNA-Seq: a revolutionary tool for transcriptomics
    • COI: 1:CAS:528:DC%2BD1cXhsFWis7bL, PID: 19015660
    • Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57–63. doi:10.1038/nrg2484
    • (2009) Nat Rev Genet , vol.10 , pp. 57-63
    • Wang, Z.1    Gerstein, M.2    Snyder, M.3
  • 67
    • 0016491430 scopus 로고
    • Number of segregating sites in genetic models without recombination
    • COI: 1:STN:280:DyaE2M7pvFSquw%3D%3D, PID: 1145509
    • Watterson GA (1975) Number of segregating sites in genetic models without recombination. Theor Popul Biol 7:256–276
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 69
    • 84901324623 scopus 로고    scopus 로고
    • Genomic signature of adaptation to climate in Medicago truncatula
    • COI: 1:CAS:528:DC%2BC2cXhtl2rs7rI, PID: 24443444
    • Yoder JB, Stanton-Geddes J, Zhou P, Briskine R, Young ND, Tiffin P (2014) Genomic signature of adaptation to climate in Medicago truncatula. Genetics 196:1263–1275. doi:10.1534/genetics.113.159319
    • (2014) Genetics , vol.196 , pp. 1263-1275
    • Yoder, J.B.1    Stanton-Geddes, J.2    Zhou, P.3    Briskine, R.4    Young, N.D.5    Tiffin, P.6
  • 70
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • COI: 1:CAS:528:DC%2BD28XotlGmuw%3D%3D, PID: 16380716
    • Yu JM et al (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38:203–208
    • (2006) Nat Genet , vol.38 , pp. 203-208
    • Yu, J.M.1


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