-
1
-
-
84901352128
-
Molecular insights on the recognition of a Lactococcus lactis cell wall pellicle by the phage 1358 receptor binding protein
-
Farenc, C. et al. Molecular insights on the recognition of a Lactococcus lactis cell wall pellicle by the phage 1358 receptor binding protein. J. Virol. 88, 7005-7015 (2014).
-
(2014)
J. Virol.
, vol.88
, pp. 7005-7015
-
-
Farenc, C.1
-
2
-
-
80052206993
-
A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries
-
Veesler, D., Cambillau, C. A common evolutionary origin for tailed-bacteriophage functional modules and bacterial machineries. Microbiol. Mol. Biol. Rev. 75, 423-433 (2011).
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 423-433
-
-
Veesler, D.1
Cambillau, C.2
-
3
-
-
84863217464
-
Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage
-
Castro-Nallar, E. et al. Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage. Genome Biol Evol 4, 382-393 (2012).
-
(2012)
Genome Biol Evol
, vol.4
, pp. 382-393
-
-
Castro-Nallar, E.1
-
4
-
-
84874302956
-
Lactococcal 936-type phages and dairy fermentation problems: From detection to evolution and prevention
-
Mahony, J., Murphy, J., van Sinderen, D. Lactococcal 936-type phages and dairy fermentation problems: from detection to evolution and prevention. Front Microbiol 3, 335 (2012).
-
(2012)
Front Microbiol
, vol.3
, pp. 335
-
-
Mahony, J.1
Murphy, J.2
Van Sinderen, D.3
-
5
-
-
0035153828
-
Comparative phage genomics and the evolution of Siphoviridae: Insights from dairy phages
-
Brsow, H., Desiere, F. Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages. Mol. Microbiol 39, 213-223 (2001).
-
(2001)
Mol. Microbiol
, vol.39
, pp. 213-223
-
-
Brsow, H.1
Desiere, F.2
-
6
-
-
0030867490
-
Analysis of the DNA sequence, gene expression, origin of replication and modular structure of the Lactococcus lactis lytic bacteriophage sk1
-
Chandry, P. S., Moore, S. C., Boyce, J. D., Davidson, B. E., Hillier A. J. Analysis of the DNA sequence, gene expression, origin of replication and modular structure of the Lactococcus lactis lytic bacteriophage sk1. Mol. Microbiol. 26, 49-64 (1997).
-
(1997)
Mol. Microbiol.
, vol.26
, pp. 49-64
-
-
Chandry, P.S.1
Moore, S.C.2
Boyce, J.D.3
Davidson, B.E.4
Hillier, A.J.5
-
7
-
-
84908056309
-
Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity
-
Murphy, J., Klumpp, J., Mahony, J., O'Connell Motherway, M., Nauta, A., van Sinderen, D. Methyltransferases acquired by lactococcal 936-type phage provide protection against restriction endonuclease activity. BMC genomics 15, 831 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 831
-
-
Murphy, J.1
Klumpp, J.2
Mahony, J.3
O'Connell Motherway, M.4
Nauta, A.5
Van Sinderen, D.6
-
8
-
-
84879816535
-
Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny
-
Mahony, J. et al. Investigation of the relationship between lactococcal host cell wall polysaccharide genotype and 936 phage receptor binding protein phylogeny Appl. Environ. Microbiol. 79, 4385-4392 (2013).
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 4385-4392
-
-
Mahony, J.1
-
9
-
-
84886286536
-
Structure, adsorption to host, and infection mechanism of virulent lactococcal phage p2
-
Bebeacua, C. et al. Structure, adsorption to host, and infection mechanism of virulent lactococcal phage p2. J. Virol. 87, 12302-12312 (2013).
-
(2013)
J. Virol.
, vol.87
, pp. 12302-12312
-
-
Bebeacua, C.1
-
10
-
-
33746477489
-
Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: Evolutionary insights into the 936 phage species
-
Mahony, J. et al. Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species. FEMS. Microbiol. Lett. 261, 253-261 (2006).
-
(2006)
FEMS. Microbiol. Lett.
, vol.261
, pp. 253-261
-
-
Mahony, J.1
-
11
-
-
84864106190
-
Multilocus sequence typing scheme for the characterization of 936-like phages infecting Lactococcus lactis
-
Moisan, M., Moineau, S. Multilocus sequence typing scheme for the characterization of 936-like phages infecting Lactococcus lactis. Appl. Environ. Microbiol. 78, 4646-4653 (2012).
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 4646-4653
-
-
Moisan, M.1
Moineau, S.2
-
12
-
-
84899476585
-
Comparative genomics of the Bifidobacterium breve taxon
-
Bottacini, F. et al. Comparative genomics of the Bifidobacterium breve taxon. BMC Genomics 1, 15 (2014).
-
(2014)
BMC Genomics
, vol.1
, pp. 15
-
-
Bottacini, F.1
-
13
-
-
84925602702
-
Core and accessory genome architecture in a group of Pseudomonas aeruginosa Mu-like phages
-
Cazares, A., Mendoza-Herndez, G., Guarneros, G. Core and accessory genome architecture in a group of Pseudomonas aeruginosa Mu-like phages. BMC genomics 15, 1146 (2014).
-
(2014)
BMC Genomics
, vol.15
, pp. 1146
-
-
Cazares, A.1
Mendoza-Herndez, G.2
Guarneros, G.3
-
14
-
-
84856579879
-
Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges
-
Huang, S., Wang, K., Jiao, N., Chen, F. Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges. Environ. Microbiol. 14, 540-558 (2012).
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 540-558
-
-
Huang, S.1
Wang, K.2
Jiao, N.3
Chen, F.4
-
15
-
-
84906841047
-
Progress in lactic acid bacterial phage research
-
Mahony, J., Bottacini, F., van Sinderen, D., Fitzgerald, G. F. Progress in lactic acid bacterial phage research. Microb. Cell. Fact. 13, S1 (2014).
-
(2014)
Microb. Cell. Fact.
, vol.13
, pp. S1
-
-
Mahony, J.1
Bottacini, F.2
Van Sinderen, D.3
Fitzgerald, G.F.4
-
16
-
-
25444524604
-
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial pangenome
-
Tettelin, H. et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pangenome". Proc. Nat. Acad. Sci. USA 102, 13950-13955 (2005).
-
(2005)
Proc. Nat. Acad. Sci. USA
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
-
17
-
-
84908113335
-
Unravelling bacteriophage 11 requirements for packaging and transfer of mobile genetic elements in Staphylococcus aureus
-
QuilesPuchalt, N., MartezRubio, R., Ram, G., Lasa, ., Penad, J. R. Unravelling bacteriophage 11 requirements for packaging and transfer of mobile genetic elements in Staphylococcus aureus. Mol. Microbiol. 91, 423-437 (2014).
-
(2014)
Mol. Microbiol.
, vol.91
, pp. 423-437
-
-
Quiles Puchalt, N.1
Martez Rubio, R.2
Ram, G.3
Lasa, J.4
Penad, J.R.5
-
18
-
-
0141926716
-
Genome and proteome of Listeria monocytogenes phage PSA: An unusual case for programmed +1 translational frameshifting in structural protein synthesis
-
Zimmer, M., Sattelberger, E., Inman, R. B., Calendar, R., Loessner, M. J. Genome and proteome of Listeria monocytogenes phage PSA: an unusual case for programmed +1 translational frameshifting in structural protein synthesis. Mol. Microbiol. 50, 303-317 (2003).
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 303-317
-
-
Zimmer, M.1
Sattelberger, E.2
Inman, R.B.3
Calendar, R.4
Loessner, M.J.5
-
19
-
-
33749021370
-
Genome sequence and global gene expression of Q54, a new phage species linking the 936 and c2 phage species of Lactococcus lactis
-
Fortier, L. C., Bransi, A., Moineau, S. Genome sequence and global gene expression of Q54, a new phage species linking the 936 and c2 phage species of Lactococcus lactis. J Bacteriol 188, 6101-6114 (2006).
-
(2006)
J Bacteriol
, vol.188
, pp. 6101-6114
-
-
Fortier, L.C.1
Bransi, A.2
Moineau, S.3
-
20
-
-
84868313344
-
Involvement of the major capsid protein and two early-expressed phage genes in the activity of the lactococcal abortive infection mechanism AbiT
-
Labrie, S. J. et al. Involvement of the major capsid protein and two early-expressed phage genes in the activity of the lactococcal abortive infection mechanism AbiT. Appl. Environ. Microbiol. 78, 6890-6899 (2012).
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 6890-6899
-
-
Labrie, S.J.1
-
21
-
-
84903975407
-
Differences in lactococcal cell wall polysaccharide structure are major determining factors in bacteriophage sensitivity
-
Ainsworth, S. et al. Differences in lactococcal cell wall polysaccharide structure are major determining factors in bacteriophage sensitivity. mBio 6, 5 e00880-00814 (2014).
-
(2014)
MBio
, vol.6
, pp. 5e00880-00814
-
-
Ainsworth, S.1
-
22
-
-
84929190604
-
The targeted recognition of Lactococcus lactis phages to their polysaccharide receptors
-
McCabe O. et al. The targeted recognition of Lactococcus lactis phages to their polysaccharide receptors. Mol. Microbiol. 96, 875-886 (2015).
-
(2015)
Mol. Microbiol.
, vol.96
, pp. 875-886
-
-
McCabe, O.1
-
23
-
-
64749089552
-
Identification and characterization of the phage gene sav, involved in sensitivity to the lactococcal abortive infection mechanism AbiV
-
Haaber, J., Rousseau, G. M., Hammer, K., Moineau, S. Identification and characterization of the phage gene sav, involved in sensitivity to the lactococcal abortive infection mechanism AbiV. Appl. Environ. Microbiol. 75, 2484-2494 (2009).
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 2484-2494
-
-
Haaber, J.1
Rousseau, G.M.2
Hammer, K.3
Moineau, S.4
-
24
-
-
2442662866
-
Lactococcal phage genes involved in sensitivity to AbiK and their relation to single-strand annealing proteins
-
Bouchard, J. D., Moineau, S. Lactococcal phage genes involved in sensitivity to AbiK and their relation to single-strand annealing proteins. J. Bacteriol. 186, 3649-3652 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3649-3652
-
-
Bouchard, J.D.1
Moineau, S.2
-
25
-
-
84878114643
-
The DNA binding mechanism of a SSB protein from Lactococcus lactis siphophage p2
-
Scaltriti, E. et al. The DNA binding mechanism of a SSB protein from Lactococcus lactis siphophage p2. Biochim. Biophys. Acta. 1834, 1070-1076 (2013).
-
(2013)
Biochim. Biophys. Acta.
, vol.1834
, pp. 1070-1076
-
-
Scaltriti, E.1
-
26
-
-
0031858916
-
Lactococcus lactis phage operon coding for an endonuclease homologous to RuvC
-
Bidnenko, E., Ehrlich, S. D., Chopin, M. C. Lactococcus lactis phage operon coding for an endonuclease homologous to RuvC. Mol. Microbiol. 28, 823-834 (1998).
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 823-834
-
-
Bidnenko, E.1
Ehrlich, S.D.2
Chopin, M.C.3
-
27
-
-
0029007417
-
Phage operon involved in sensitivity to the Lactococcus lactis abortive infection mechanism AbiD1
-
Bidnenko, E., Ehrlich, D., Chopin M. C. Phage operon involved in sensitivity to the Lactococcus lactis abortive infection mechanism AbiD1. J. Bacteriol. 177, 3824-3829 (1995).
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3824-3829
-
-
Bidnenko, E.1
Ehrlich, D.2
Chopin, M.C.3
-
28
-
-
2342556582
-
A phage protein confers resistance to the lactococcal abortive infection mechanism AbiP
-
Domingues, S., Chopin, A., Ehrlich, S. D., Chopin, M. C. A phage protein confers resistance to the lactococcal abortive infection mechanism AbiP. J. Bacteriol. 186, 3278-3281 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3278-3281
-
-
Domingues, S.1
Chopin, A.2
Ehrlich, S.D.3
Chopin, M.C.4
-
29
-
-
33644862908
-
RecJ exonuclease: Substrates, products and interaction with SSB
-
Han, E. S. et al. RecJ exonuclease: substrates, products and interaction with SSB. Nucleic Acids Res. 34, 1084-1091 (2006).
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 1084-1091
-
-
Han, E.S.1
-
30
-
-
0033514996
-
Evolutionary relationships among diverse bacteriophages and prophages: All the world'sa phage
-
Hendrix, R. W., Smith, M. C., Burns, R. N., Ford, M. E., Hatfull, G. F. Evolutionary relationships among diverse bacteriophages and prophages: all the world'sa phage. Proc. Nat. Acad. Sci. USA 96, 2192-2197 (1999).
-
(1999)
Proc. Nat. Acad. Sci. USA
, vol.96
, pp. 2192-2197
-
-
Hendrix, R.W.1
Smith, M.C.2
Burns, R.N.3
Ford, M.E.4
Hatfull, G.F.5
-
32
-
-
0037335488
-
Bacteriophage T4 genome
-
Miller, E. S., Kutter, E., Mosig, G., Arisaka, F., Kunisawa, T., Rer, W. Bacteriophage T4 genome. Microb. Mol. Biol. Rev. 67, 86-156 (2003).
-
(2003)
Microb. Mol. Biol. Rev.
, vol.67
, pp. 86-156
-
-
Miller, E.S.1
Kutter, E.2
Mosig, G.3
Arisaka, F.4
Kunisawa, T.5
Rer, W.6
-
33
-
-
28044455404
-
A second case of 1 ribosomal frameshifting affecting a major virion protein of the Lactobacillus bacteriophage A2
-
Rodruez, I., Garc, P., Suez, J. E. A second case of 1 ribosomal frameshifting affecting a major virion protein of the Lactobacillus bacteriophage A2. J. Bacteriol. 187, 8201-8204 (2005).
-
(2005)
J. Bacteriol.
, vol.187
, pp. 8201-8204
-
-
Rodruez, I.1
Garc, P.2
Suez, J.E.3
-
34
-
-
53849127850
-
Origin and function of the two major tail proteins of bacteriophage SPP1
-
Auzat, I., Dre, A., Weise, F., Lurz, R., Tavares P. Origin and function of the two major tail proteins of bacteriophage SPP1. Mol. Microbiol. 70, 557-569 (2008).
-
(2008)
Mol. Microbiol.
, vol.70
, pp. 557-569
-
-
Auzat, I.1
Dre, A.2
Weise, F.3
Lurz, R.4
Tavares, P.5
-
35
-
-
33646191863
-
Ig-like domains on bacteriophages: A tale of promiscuity and deceit
-
Fraser, J. S., Yu, Z., Maxwell, K. L., Davidson, A. R. Ig-like domains on bacteriophages: a tale of promiscuity and deceit. J. Mol. Biol. 359, 496-507 (2006).
-
(2006)
J. Mol. Biol.
, vol.359
, pp. 496-507
-
-
Fraser, J.S.1
Yu, Z.2
Maxwell, K.L.3
Davidson, A.R.4
-
36
-
-
84880622625
-
Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese producing plants
-
Murphy, J. et al. Biodiversity of lactococcal bacteriophages isolated from 3 Gouda-type cheese producing plants. J. Dairy Sci. 96, 4945-4957 (2013).
-
(2013)
J. Dairy Sci.
, vol.96
, pp. 4945-4957
-
-
Murphy, J.1
-
37
-
-
0033214628
-
Heuristic approach to deriving models for gene finding
-
Besemer, J., Borodovsky, M. Heuristic approach to deriving models for gene finding. Nucleic Acids Res. 27, 3911-3920 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3911-3920
-
-
Besemer, J.1
Borodovsky, M.2
-
38
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
Rutherford, K. et al. Artemis: sequence visualization and annotation. Bioinformatics 16, 944-945 (2000).
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
-
39
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 215, 403-410 (1990).
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
40
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright, A. J., Van Dongen, S., Ouzounis, C. A. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res. 30, 1575-1584 (2002).
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
41
-
-
84890330527
-
MEGA6: Molecular evolutionary genetics analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A., Kumar, S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30, 2725-2729 (2013).
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
42
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed, A. et al. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34, 374 (2003).
-
(2003)
Biotechniques
, vol.34
, pp. 374
-
-
Saeed, A.1
-
43
-
-
0041386069
-
ClustalW-MPI: ClustalW analysis using distributed and parallel computing
-
Li, K. B. ClustalW-MPI: ClustalW analysis using distributed and parallel computing. Bioinformatics 19, 1585-1586 (2003).
-
(2003)
Bioinformatics
, vol.19
, pp. 1585-1586
-
-
Li, K.B.1
-
44
-
-
34249734822
-
Gepard: A rapid and sensitive tool for creating dotplots on genome scale
-
Krumsiek, J., Arnold, R., Rattei, T. Gepard: a rapid and sensitive tool for creating dotplots on genome scale. Bioinformatics 23, 1026-1028 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 1026-1028
-
-
Krumsiek, J.1
Arnold, R.2
Rattei, T.3
-
45
-
-
79961130449
-
Expanding the molecular toolbox for Lactococcus lactis: Construction of an inducible thioredoxin gene fusion expression system
-
Douillard, F. P., O'Connell Motherway, M., Cambillau, C., van Sinderen, D. Expanding the molecular toolbox for Lactococcus lactis: construction of an inducible thioredoxin gene fusion expression system. Microb. Cell. Fact. 10, 66 (2011).
-
(2011)
Microb. Cell. Fact.
, vol.10
, pp. 66
-
-
Douillard, F.P.1
O'Connell Motherway, M.2
Cambillau, C.3
Van Sinderen, D.4
-
46
-
-
84880610836
-
Structure and functional analysis of the host recognition device of lactococcal phage tuc2009
-
Collins, B. et al. Structure and functional analysis of the host recognition device of lactococcal phage tuc2009. J. Virol. 87, 8429-8440 (2013).
-
(2013)
J. Virol.
, vol.87
, pp. 8429-8440
-
-
Collins, B.1
-
47
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254 (1976).
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
48
-
-
33644888327
-
Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009
-
Vegge, C. S., Vogensen, F. K., Mc Grath, S., Neve, H.,van Sinderen, D., Brdsted, L. Identification of the lower baseplate protein as the antireceptor of the temperate lactococcal bacteriophages TP901-1 and Tuc2009. J. Bacteriol. 188, 55-63 (2006).
-
(2006)
J. Bacteriol.
, vol.188
, pp. 55-63
-
-
Vegge, C.S.1
Vogensen, F.K.2
Mc Grath, S.3
Neve, H.4
Van Sinderen, D.5
Brdsted, L.6
-
49
-
-
2442650308
-
Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity
-
Kenny, J. G., McGrath, S., Fitzgerald, G. F., van Sinderen, D. Bacteriophage Tuc2009 encodes a tail-associated cell wall-degrading activity. J. Bacteriol. 186, 3480-3491 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3480-3491
-
-
Kenny, J.G.1
McGrath, S.2
Fitzgerald, G.F.3
Van Sinderen, D.4
-
50
-
-
0021357674
-
Differentiation of lactic streptococcal phages into phage species by DNA-DNA homology
-
Jarvis, A. W. Differentiation of lactic streptococcal phages into phage species by DNA-DNA homology. Appl. Environ. Microbiol. 47, 343-349 (1984).
-
(1984)
Appl. Environ. Microbiol.
, vol.47
, pp. 343-349
-
-
Jarvis, A.W.1
-
51
-
-
0035021812
-
The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. Lactis IL1403
-
Bolotin, A. et al. The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res. 11, 731-753 (2001).
-
(2001)
Genome Res.
, vol.11
, pp. 731-753
-
-
Bolotin, A.1
-
52
-
-
0006327011
-
Heteroduplex analysis of the genomes of Streptococcus lactis "subsp. Diacetylactis bacteriophages of the P008-type isolated from German cheese factories
-
Loof, M., Teuber, M. Heteroduplex analysis of the genomes of Streptococcus lactis "subsp. diacetylactis" bacteriophages of the P008-type isolated from German cheese factories. Syst. Appl. Microbiol. 8, 226-229 (1986).
-
(1986)
Syst. Appl. Microbiol.
, vol.8
, pp. 226-229
-
-
Loof, M.1
Teuber, M.2
|