메뉴 건너뛰기




Volumn 78, Issue 13, 2012, Pages 4646-4653

Multilocus sequence typing scheme for the characterization of 936- like phages infecting Lactococcus lactis

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEINS; DAIRY INDUSTRY; DAIRY PLANTS; DISCRIMINATORY POWER; FERMENTATION PROCESS; GENOMIC SEQUENCE; LACTIS STRAIN; LACTOCOCCUS LACTIS; MULTILOCUS SEQUENCE TYPING; PCR PRODUCTS; PHAGE INFECTION; PHYLOGENETIC ANALYSIS; PRODUCT SAFETY; PUBLIC DATABASE; RESTRICTION FRAGMENT LENGTH POLYMORPHISMS; SEQUENCE ANALYSIS;

EID: 84864106190     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00931-12     Document Type: Article
Times cited : (18)

References (44)
  • 1
    • 0032246556 scopus 로고    scopus 로고
    • Tailed bacteriophages: the order Caudovirales
    • Ackermann HW. 1998. Tailed bacteriophages: the order Caudovirales. Adv. Virus Res. 51:135-201.
    • (1998) Adv. Virus Res. , vol.51 , pp. 135-201
    • Ackermann, H.W.1
  • 2
    • 0034168604 scopus 로고    scopus 로고
    • Characterization of mesophilic mixed starter cultures used for the manufacture of aged cheddar cheese
    • Bissonnette F, Labrie S, Deveau H, Lamoureux M, Moineau S. 2000. Characterization of mesophilic mixed starter cultures used for the manufacture of aged cheddar cheese. J. Dairy Sci. 83:620-627.
    • (2000) J. Dairy Sci. , vol.83 , pp. 620-627
    • Bissonnette, F.1    Labrie, S.2    Deveau, H.3    Lamoureux, M.4    Moineau, S.5
  • 3
    • 79953101588 scopus 로고    scopus 로고
    • Phenotypic and genotypic variations within a single bacteriophage species
    • Ceyssens PJ, et al. 2011. Phenotypic and genotypic variations within a single bacteriophage species. Virol. J. 8:134.
    • (2011) Virol. J. , vol.8 , pp. 134
    • Ceyssens, P.J.1
  • 4
    • 0030867490 scopus 로고    scopus 로고
    • Analysis of the DNA sequence, gene expression, origin of replication and modular structure of the Lactococcus lactis lytic bacteriophage sk1
    • Chandry PS, Moore SC, Boyce JD, Davidson BE, Hillier AJ. 1997. Analysis of the DNA sequence, gene expression, origin of replication and modular structure of the Lactococcus lactis lytic bacteriophage sk1. Mol. Microbiol. 26:49-64.
    • (1997) Mol. Microbiol. , vol.26 , pp. 49-64
    • Chandry, P.S.1    Moore, S.C.2    Boyce, J.D.3    Davidson, B.E.4    Hillier, A.J.5
  • 5
    • 0036229271 scopus 로고    scopus 로고
    • Sequence analysis of the lactococcal bacteriophage bIL170: insights into structural proteins andHNHendonucleases in dairy phages
    • Crutz-Le Coq AM, Cesselin B, Commissaire J, Anba J. 2002. Sequence analysis of the lactococcal bacteriophage bIL170: insights into structural proteins andHNHendonucleases in dairy phages. Microbiology 148:985-1001.
    • (2002) Microbiology , vol.148 , pp. 985-1001
    • Crutz-Le Coq, A.M.1    Cesselin, B.2    Commissaire, J.3    Anba, J.4
  • 7
    • 24944442522 scopus 로고    scopus 로고
    • Global gene expression analysis of two Streptococcus thermophilus bacteriophages using DNA microarray
    • Duplessis M, Russell WM, Romero DA, Moineau S. 2005. Global gene expression analysis of two Streptococcus thermophilus bacteriophages using DNA microarray. Virology 340:192-208.
    • (2005) Virology , vol.340 , pp. 192-208
    • Duplessis, M.1    Russell, W.M.2    Romero, D.A.3    Moineau, S.4
  • 8
    • 38949125046 scopus 로고    scopus 로고
    • Bacteriophages and food fermentations
    • McGrath S, van Sinderen D (ed), Horizon Scientific Press/Caister Academic Press, Norfolk, United Kingdom
    • Emond E, Moineau S. 2007. Bacteriophages and food fermentations, p 93-124. In McGrath S, van Sinderen D (ed), Bacteriophage: genetics and molecular biology. Horizon Scientific Press/Caister Academic Press, Norfolk, United Kingdom.
    • (2007) Bacteriophage: genetics and molecular biology , pp. 93-124
    • Emond, E.1    Moineau, S.2
  • 9
    • 79960642085 scopus 로고    scopus 로고
    • Typing of bacteriophages by randomly amplified polymorphicDNA(RAPD)-PCR to assess genetic diversity
    • Gutierrez D, et al. 2011. Typing of bacteriophages by randomly amplified polymorphicDNA(RAPD)-PCR to assess genetic diversity. FEMS Microbiol. Lett. 322:90-97.
    • (2011) FEMS Microbiol. Lett. , vol.322 , pp. 90-97
    • Gutierrez, D.1
  • 10
    • 0031788831 scopus 로고    scopus 로고
    • Detecting linkage disequilibrium in bacterial populations
    • Haubold B, Travisano M, Rainey PB, Hudson RR. 1998. Detecting linkage disequilibrium in bacterial populations. Genetics 150:1341-1348.
    • (1998) Genetics , vol.150 , pp. 1341-1348
    • Haubold, B.1    Travisano, M.2    Rainey, P.B.3    Hudson, R.R.4
  • 11
    • 64449086937 scopus 로고    scopus 로고
    • Analysis of the complete genome sequence of the lactococcal bacteriophage bIBB29
    • Hejnowicz MS, Golebiewski M, Bardowski J. 2009. Analysis of the complete genome sequence of the lactococcal bacteriophage bIBB29. Int. J. Food Microbiol. 131:52-61.
    • (2009) Int. J. Food Microbiol. , vol.131 , pp. 52-61
    • Hejnowicz, M.S.1    Golebiewski, M.2    Bardowski, J.3
  • 12
    • 0023738045 scopus 로고
    • Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity
    • Hunter PR, Gaston MA. 1988. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J. Clin. Microbiol. 26:2465-2466.
    • (1988) J. Clin. Microbiol. , vol.26 , pp. 2465-2466
    • Hunter, P.R.1    Gaston, M.A.2
  • 13
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 14
    • 0018071263 scopus 로고
    • Serological studies of a host range mutant of a lactic streptococcal bacteriophage
    • Jarvis AW. 1978. Serological studies of a host range mutant of a lactic streptococcal bacteriophage. Appl. Environ. Microbiol. 36:785-789.
    • (1978) Appl. Environ. Microbiol. , vol.36 , pp. 785-789
    • Jarvis, A.W.1
  • 15
    • 0036137328 scopus 로고    scopus 로고
    • Sequence type analysis and recombinational tests (START)
    • Jolley KA, Feil EJ, Chan MS, Maiden MC. 2001. Sequence type analysis and recombinational tests (START). Bioinformatics 17:1230-1231.
    • (2001) Bioinformatics , vol.17 , pp. 1230-1231
    • Jolley, K.A.1    Feil, E.J.2    Chan, M.S.3    Maiden, M.C.4
  • 16
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: scalable analysis of bacterial genome variation at the population level
    • doi: 10.1186/1471-2105-11-595
    • Jolley KA, Maiden MC. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595. doi: 10.1186/1471-2105-11-595.
    • (2010) BMC Bioinformatics , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 17
    • 0028105348 scopus 로고
    • An ecological study of lytic bacteriophages of Lactococcus lactis subsp. cremoris isolated in a cheese plant over a five year period
    • Josephsen J, et al. 1994. An ecological study of lytic bacteriophages of Lactococcus lactis subsp. cremoris isolated in a cheese plant over a five year period. Int. Dairy J. 4:123-140.
    • (1994) Int. Dairy J. , vol.4 , pp. 123-140
    • Josephsen, J.1
  • 18
    • 77956245505 scopus 로고    scopus 로고
    • Multilocus PCR typing strategy for differentiation of Staphylococcus aureus siphoviruses reflecting their modular genome structure
    • Kahankova J, et al. 2010. Multilocus PCR typing strategy for differentiation of Staphylococcus aureus siphoviruses reflecting their modular genome structure. Environ. Microbiol. 12:2527-2538.
    • (2010) Environ. Microbiol. , vol.12 , pp. 2527-2538
    • Kahankova, J.1
  • 19
    • 0034009245 scopus 로고    scopus 로고
    • Multiplex PCR for detection and identification of lactococcal bacteriophages
    • Labrie S, Moineau S. 2000. Multiplex PCR for detection and identification of lactococcal bacteriophages. Appl. Environ. Microbiol. 66:987-994.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 987-994
    • Labrie, S.1    Moineau, S.2
  • 20
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree of Life v2: online annotation and display of phylogenetic trees made easy
    • doi: 10.1093/nar/gkr201
    • Letunic I, Bork P. 2011. Interactive Tree of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39:W475-W478. doi:10.1093/nar/gkr201.
    • (2011) Nucleic Acids Res , vol.39
    • Letunic, I.1    Bork, P.2
  • 21
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 22
    • 10444250342 scopus 로고    scopus 로고
    • Milk contamination and resistance to processing conditions determine the fate of Lactococcus lactis bacteriophages in dairies
    • Madera C, Monjardin C, Suarez JE. 2004. Milk contamination and resistance to processing conditions determine the fate of Lactococcus lactis bacteriophages in dairies. Appl. Environ. Microbiol. 70:7365-7371.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 7365-7371
    • Madera, C.1    Monjardin, C.2    Suarez, J.E.3
  • 23
    • 0031708945 scopus 로고    scopus 로고
    • Temporal transcription of the lactococcal temperate phage TP901-1 and DNA sequence of the early promoter region
    • Madsen PL, Hammer K. 1998. Temporal transcription of the lactococcal temperate phage TP901-1 and DNA sequence of the early promoter region. Microbiology 144:2203-2215.
    • (1998) Microbiology , vol.144 , pp. 2203-2215
    • Madsen, P.L.1    Hammer, K.2
  • 24
    • 33746477489 scopus 로고    scopus 로고
    • Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species
    • Mahony J, et al. 2006. Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species. FEMS Microbiol. Lett. 261:253-261.
    • (2006) FEMS Microbiol. Lett. , vol.261 , pp. 253-261
    • Mahony, J.1
  • 25
    • 33750290454 scopus 로고    scopus 로고
    • Multilocus sequence typing of bacteria
    • Maiden MC. 2006. Multilocus sequence typing of bacteria. Annu. Rev. Microbiol. 60:561-588.
    • (2006) Annu. Rev. Microbiol. , vol.60 , pp. 561-588
    • Maiden, M.C.1
  • 26
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms
    • Maiden MC, et al. 1998. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc. Natl. Acad. Sci. U. S. A. 95:3140-3145.
    • (1998) Proc. Natl. Acad. Sci. U. S. A. , vol.95 , pp. 3140-3145
    • Maiden, M.C.1
  • 27
    • 1542499580 scopus 로고    scopus 로고
    • Isolation and characterization of lactococcal bacteriophages from cultured buttermilk plants in the United States
    • Moineau S, et al. 1996. Isolation and characterization of lactococcal bacteriophages from cultured buttermilk plants in the United States. J. Dairy Sci. 79:2104-2111.
    • (1996) J. Dairy Sci. , vol.79 , pp. 2104-2111
    • Moineau, S.1
  • 28
    • 0026471065 scopus 로고
    • Characterization of lactococcal bacteriophages from Quebec cheese plants
    • Moineau S, Fortier J, Ackermann HW, Pandian S. 1992. Characterization of lactococcal bacteriophages from Quebec cheese plants. Can. J. Microbiol. 38:875-882.
    • (1992) Can. J. Microbiol. , vol.38 , pp. 875-882
    • Moineau, S.1    Fortier, J.2    Ackermann, H.W.3    Pandian, S.4
  • 29
    • 0028200505 scopus 로고
    • Evolution of a lytic bacteriophage via DNA acquisition from the Lactococcus lactis chromosome
    • Moineau S, Pandian S, Klaenhammer TR. 1994. Evolution of a lytic bacteriophage via DNA acquisition from the Lactococcus lactis chromosome. Appl. Environ. Microbiol. 60:1832-1841.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1832-1841
    • Moineau, S.1    Pandian, S.2    Klaenhammer, T.R.3
  • 30
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei M, Gojobori T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 31
    • 78650750997 scopus 로고    scopus 로고
    • Genes but not genomes reveal bacterial domestication of Lactococcus lactis
    • doi: 10.1371/ journal.pone.0015306
    • Passerini D, et al. 2010. Genes but not genomes reveal bacterial domestication of Lactococcus lactis. PLoS One 5:e15306. doi:10.1371/ journal.pone.0015306.
    • (2010) PLoS One , vol.5
    • Passerini, D.1
  • 32
    • 36649035092 scopus 로고    scopus 로고
    • Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting
    • Rademaker JLW, et al. 2007. Diversity analysis of dairy and nondairy Lactococcus lactis isolates, using a novel multilocus sequence analysis scheme and (GTG)5-PCR fingerprinting. Appl. Environ. Microbiol. 73: 7128-7137.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 7128-7137
    • Rademaker, J.L.W.1
  • 33
    • 59949096426 scopus 로고    scopus 로고
    • Biodiversity of Lactococcus lactis bacteriophages in the Republic of Belarus
    • Raiski A, Belyasova N. 2009. Biodiversity of Lactococcus lactis bacteriophages in the Republic of Belarus. Int. J. Food Microbiol. 130:1-5.
    • (2009) Int. J. Food Microbiol. , vol.130 , pp. 1-5
    • Raiski, A.1    Belyasova, N.2
  • 34
    • 68549098051 scopus 로고    scopus 로고
    • Evolution of Lactococcus lactis phages within a cheese factory
    • Rousseau GM, Moineau S. 2009. Evolution of Lactococcus lactis phages within a cheese factory. Appl. Environ. Microbiol. 75:5336-5344.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5336-5344
    • Rousseau, G.M.1    Moineau, S.2
  • 35
    • 0024356449 scopus 로고
    • Statistical tests for detecting gene conversion
    • Sawyer S. 1989. Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6:526-538.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 526-538
    • Sawyer, S.1
  • 36
    • 77951089914 scopus 로고    scopus 로고
    • Structure of lactococcal phage p2 baseplate and its mechanism of activation
    • Sciara G, et al. 2010. Structure of lactococcal phage p2 baseplate and its mechanism of activation. Proc. Natl. Acad. Sci. U. S. A. 107:6852-6857.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 6852-6857
    • Sciara, G.1
  • 37
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden R. 1996. The Staden sequence analysis package. Mol. Biotechnol. 5:233-241.
    • (1996) Mol. Biotechnol. , vol.5 , pp. 233-241
    • Staden, R.1
  • 39
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 40
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 41
    • 0016686551 scopus 로고
    • Improved medium for lactic streptococci and their bacteriophages
    • Terzaghi BE, Sandine WE. 1975. Improved medium for lactic streptococci and their bacteriophages. Appl. Microbiol. 29:807-813.
    • (1975) Appl. Microbiol. , vol.29 , pp. 807-813
    • Terzaghi, B.E.1    Sandine, W.E.2
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 33846033611 scopus 로고    scopus 로고
    • The secret life of the multilocus sequence type
    • Turner KM, Feil EJ. 2007. The secret life of the multilocus sequence type. Int. J. Antimicrob. Agents 29:129-135.
    • (2007) Int. J. Antimicrob. Agents , vol.29 , pp. 129-135
    • Turner, K.M.1    Feil, E.J.2
  • 44
    • 0141817852 scopus 로고    scopus 로고
    • Multi-locus sequence typing: a tool for global epidemiology
    • Urwin R, Maiden MC. 2003. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol. 11:479-487.
    • (2003) Trends Microbiol , vol.11 , pp. 479-487
    • Urwin, R.1    Maiden, M.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.