-
1
-
-
36949032098
-
Annotation, comparison and databases for hundreds of bacterial genomes
-
Medigue C, Moszer I: Annotation, comparison and databases for hundreds of bacterial genomes. Res Microbiol 2007,158(10):724-736. 10.1016/j.resmic.2007.09.009.
-
(2007)
Res Microbiol
, vol.158
, Issue.10
, pp. 724-736
-
-
Medigue, C.1
Moszer, I.2
-
2
-
-
42949094250
-
Dynamics of Pseudomonas aeruginosa genome evolution
-
Mathee K, Narasimhan G, Valdes C, Qiu X, Matewish JM, Koehrsen M, Rokas A, Yandava CN, Engels R, Zeng E, Olavarietta R, Doud M, Smith RS, Montgomery P, White JR, Godfrey PA, Kodira C, Birren B, Galagan JE, Lory S: Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A 2008,105(8):3100-3105. 10.1073/pnas.0711982105.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.8
, pp. 3100-3105
-
-
Mathee, K.1
Narasimhan, G.2
Valdes, C.3
Qiu, X.4
Matewish, J.M.5
Koehrsen, M.6
Rokas, A.7
Yandava, C.N.8
Engels, R.9
Zeng, E.10
Olavarietta, R.11
Doud, M.12
Smith, R.S.13
Montgomery, P.14
White, J.R.15
Godfrey, P.A.16
Kodira, C.17
Birren, B.18
Galagan, J.E.19
Lory, S.20
more..
-
3
-
-
0034332560
-
The origins and ongoing evolution of viruses
-
Hendrix RW, Lawrence JG, Hatfull GF, Casjens S: The origins and ongoing evolution of viruses. Trends Microbiol 2000,8(11):504-508. 10.1016/S0966-842X(00)01863-1.
-
(2000)
Trends Microbiol
, vol.8
, Issue.11
, pp. 504-508
-
-
Hendrix, R.W.1
Lawrence, J.G.2
Hatfull, G.F.3
Casjens, S.4
-
4
-
-
34247602006
-
Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery
-
Comeau AM, Bertrand C, Letarov A, Tetart F, Krisch HM: Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 2007,362(2):384-396. 10.1016/j.virol.2006.12.031.
-
(2007)
Virology
, vol.362
, Issue.2
, pp. 384-396
-
-
Comeau, A.M.1
Bertrand, C.2
Letarov, A.3
Tetart, F.4
Krisch, H.M.5
-
5
-
-
84876489323
-
Genomes of marine cyanopodoviruses reveal multiple origins of diversity
-
Labrie SJ, Frois Moniz K, Osburne MS, Kelly L, Roggensack SE, Sullivan MB, Gearin G, Zeng Q, Fitzgerald M, Henn MR, Chisholm SW: Genomes of marine cyanopodoviruses reveal multiple origins of diversity. Environ Microbiol 2013,15(5):1356-1376. 10.1111/1462-2920.12053.
-
(2013)
Environ Microbiol
, vol.15
, Issue.5
, pp. 1356-1376
-
-
Labrie, S.J.1
Frois Moniz, K.2
Osburne, M.S.3
Kelly, L.4
Roggensack, S.E.5
Sullivan, M.B.6
Gearin, G.7
Zeng, Q.8
Fitzgerald, M.9
Henn, M.R.10
Chisholm, S.W.11
-
6
-
-
78249280297
-
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
-
Sullivan MB, Huang KH, Ignacio Espinoza JC, Berlin AM, Kelly L, Weigele PR, DeFrancesco AS, Kern SE, Thompson LR, Young S, Yandava C, Fu R, Krastins B, Chase M, Sarracino D, Osburne MS, Henn MR, Chisholm SW: Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ Microbiol 2010,12(11):3035-3056. 10.1111/j.1462-2920.2010.02280.x.
-
(2010)
Environ Microbiol
, vol.12
, Issue.11
, pp. 3035-3056
-
-
Sullivan, M.B.1
Huang, K.H.2
Ignacio Espinoza, J.C.3
Berlin, A.M.4
Kelly, L.5
Weigele, P.R.6
DeFrancesco, A.S.7
Kern, S.E.8
Thompson, L.R.9
Young, S.10
Yandava, C.11
Fu, R.12
Krastins, B.13
Chase, M.14
Sarracino, D.15
Osburne, M.S.16
Henn, M.R.17
Chisholm, S.W.18
-
7
-
-
0034716946
-
Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages
-
Juhala RJ, Ford ME, Duda RL, Youlton A, Hatfull GF, Hendrix RW: Genomic sequences of bacteriophages HK97 and HK022: pervasive genetic mosaicism in the lambdoid bacteriophages. J Mol Biol 2000,299(1):27-51. 10.1006/jmbi.2000.3729.
-
(2000)
J Mol Biol
, vol.299
, Issue.1
, pp. 27-51
-
-
Juhala, R.J.1
Ford, M.E.2
Duda, R.L.3
Youlton, A.4
Hatfull, G.F.5
Hendrix, R.W.6
-
8
-
-
0242323595
-
Bacteriophage genomics
-
Hendrix RW: Bacteriophage genomics. Curr Opin Microbiol 2003,6(5):506-511. 10.1016/j.mib.2003.09.004.
-
(2003)
Curr Opin Microbiol
, vol.6
, Issue.5
, pp. 506-511
-
-
Hendrix, R.W.1
-
9
-
-
0036597231
-
Bacteriophages: evolution of the majority
-
Hendrix RW: Bacteriophages: evolution of the majority. Theor Popul Biol 2002,61(4):471-480. 10.1006/tpbi.2002.1590.
-
(2002)
Theor Popul Biol
, vol.61
, Issue.4
, pp. 471-480
-
-
Hendrix, R.W.1
-
10
-
-
0347915669
-
Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112
-
Wang PW, Chu L, Guttman DS: Complete sequence and evolutionary genomic analysis of the Pseudomonas aeruginosa transposable bacteriophage D3112. J Bacteriol 2003,186(2):400-410.
-
(2003)
J Bacteriol
, vol.186
, Issue.2
, pp. 400-410
-
-
Wang, P.W.1
Chu, L.2
Guttman, D.S.3
-
11
-
-
0025373755
-
Pseudomonas aeruginosa transposable bacteriophages D3112 and B3 require pili and surface growth for adsorption
-
Roncero C, Darzins A, Casadaban MJ: Pseudomonas aeruginosa transposable bacteriophages D3112 and B3 require pili and surface growth for adsorption. J Bacteriol 1990,172(4):1899-1904.
-
(1990)
J Bacteriol
, vol.172
, Issue.4
, pp. 1899-1904
-
-
Roncero, C.1
Darzins, A.2
Casadaban, M.J.3
-
12
-
-
4544321747
-
Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa
-
Braid MD, Silhavy JL, Kitts CL, Cano RJ, Howe MM: Complete genomic sequence of bacteriophage B3, a Mu-like phage of Pseudomonas aeruginosa . J Bacteriol 2004,186(19):6560-6574. 10.1128/JB.186.19.6560-6574.2004.
-
(2004)
J Bacteriol
, vol.186
, Issue.19
, pp. 6560-6574
-
-
Braid, M.D.1
Silhavy, J.L.2
Kitts, C.L.3
Cano, R.J.4
Howe, M.M.5
-
13
-
-
0036299014
-
Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus.
-
Morgan GJ, Hatfull GF, Casjens S, Hendrix RW: Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus. J Mol Biol 2002,317(3):337-359. 10.1006/jmbi.2002.5437.
-
(2002)
J Mol Biol
, vol.317
, Issue.3
, pp. 337-359
-
-
Morgan, G.J.1
Hatfull, G.F.2
Casjens, S.3
Hendrix, R.W.4
-
14
-
-
84864110943
-
High diversity and novel species of Pseudomonas aeruginosa bacteriophages
-
Sepulveda-Robles O, Kameyama L, Guarneros G: High diversity and novel species of Pseudomonas aeruginosa bacteriophages. Appl Environ Microbiol 2012,78(12):4510-4515. 10.1128/AEM.00065-12.
-
(2012)
Appl Environ Microbiol
, vol.78
, Issue.12
, pp. 4510-4515
-
-
Sepulveda-Robles, O.1
Kameyama, L.2
Guarneros, G.3
-
15
-
-
33750924336
-
Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial
-
Lee DG, Urbach JM, Wu G, Liberati NT, Feinbaum RL, Miyata S, Diggins LT, He J, Saucier M, Deziel E, Friedman L, Li L, Grills G, Montgomery K, Kucherlapati R, Rahme LG, Ausubel FM: Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. Genome Biol 2006,7(10):R90. 10.1186/gb-2006-7-10-r90.
-
(2006)
Genome Biol
, vol.7
, Issue.10
, pp. R90
-
-
Lee, D.G.1
Urbach, J.M.2
Wu, G.3
Liberati, N.T.4
Feinbaum, R.L.5
Miyata, S.6
Diggins, L.T.7
He, J.8
Saucier, M.9
Deziel, E.10
Friedman, L.11
Li, L.12
Grills, G.13
Montgomery, K.14
Kucherlapati, R.15
Rahme, L.G.16
Ausubel, F.M.17
-
16
-
-
84864382264
-
Complete genome sequences of two Pseudomonas aeruginosa temperate phages, MP29 and MP42, which lack the phage-host CRISPR interaction
-
Chung IY, Cho YH: Complete genome sequences of two Pseudomonas aeruginosa temperate phages, MP29 and MP42, which lack the phage-host CRISPR interaction. J Virol 2012,86(15):8336. 10.1128/JVI.01127-12.
-
(2012)
J Virol
, vol.86
, Issue.15
, pp. 8336
-
-
Chung, I.Y.1
Cho, Y.H.2
-
17
-
-
84863258111
-
Complete genome sequence of Pseudomonas aeruginosa lytic bacteriophage PA1O which resembles temperate bacteriophage D3112
-
Kim S, Rahman M, Kim J: Complete genome sequence of Pseudomonas aeruginosa lytic bacteriophage PA1O which resembles temperate bacteriophage D3112. J Virol 2012,86(6):3400-3401. 10.1128/JVI.07191-11.
-
(2012)
J Virol
, vol.86
, Issue.6
, pp. 3400-3401
-
-
Kim, S.1
Rahman, M.2
Kim, J.3
-
18
-
-
58149479228
-
Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa
-
Zegans ME, Wagner JC, Cady KC, Murphy DM, Hammond JH, O'Toole GA: Interaction between bacteriophage DMS3 and host CRISPR region inhibits group behaviors of Pseudomonas aeruginosa . J Bacteriol 2009,191(1):210-219. 10.1128/JB.00797-08.
-
(2009)
J Bacteriol
, vol.191
, Issue.1
, pp. 210-219
-
-
Zegans, M.E.1
Wagner, J.C.2
Cady, K.C.3
Murphy, D.M.4
Hammond, J.H.5
O'Toole, G.A.6
-
19
-
-
34948870403
-
Genome sequence comparison and superinfection between two related Pseudomonas aeruginosa phages, D3112 and MP22
-
Heo YJ, Chung IY, Choi KB, Lau GW, Cho YH: Genome sequence comparison and superinfection between two related Pseudomonas aeruginosa phages, D3112 and MP22. Microbiology 2007,153(Pt 9):2885-2895.
-
(2007)
Microbiology
, vol.153
, pp. 2885-2895
-
-
Heo, Y.J.1
Chung, I.Y.2
Choi, K.B.3
Lau, G.W.4
Cho, Y.H.5
-
20
-
-
61449134105
-
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool epidemic strain of Pseudomonas aeruginosa
-
Winstanley C, Langille MG, Fothergill JL, Kukavica-Ibrulj I, Paradis-Bleau C, Sanschagrin F, Thomson NR, Winsor GL, Quail MA, Lennard N, Bignell A, Clarke L, Seeger K, Saunders D, Harris D, Parkhill J, Hancock RE, Brinkman FS, Levesque RC: Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool epidemic strain of Pseudomonas aeruginosa . Genome Res 2009,19(1):12-23.
-
(2009)
Genome Res
, vol.19
, Issue.1
, pp. 12-23
-
-
Winstanley, C.1
Langille, M.G.2
Fothergill, J.L.3
Kukavica-Ibrulj, I.4
Paradis-Bleau, C.5
Sanschagrin, F.6
Thomson, N.R.7
Winsor, G.L.8
Quail, M.A.9
Lennard, N.10
Bignell, A.11
Clarke, L.12
Seeger, K.13
Saunders, D.14
Harris, D.15
Parkhill, J.16
Hancock, R.E.17
Brinkman, F.S.18
Levesque, R.C.19
-
21
-
-
79952328144
-
Genetic characterization indicates that a specific subpopulation of Pseudomonas aeruginosa is associated with keratitis infections
-
Stewart RM, Wiehlmann L, Ashelford KE, Preston SJ, Frimmersdorf E, Campbell BJ, Neal TJ, Hall N, Tuft S, Kaye SB, Winstanley C: Genetic characterization indicates that a specific subpopulation of Pseudomonas aeruginosa is associated with keratitis infections. J Clin Microbiol 2011,49(3):993-1003. 10.1128/JCM.02036-10.
-
(2011)
J Clin Microbiol
, vol.49
, Issue.3
, pp. 993-1003
-
-
Stewart, R.M.1
Wiehlmann, L.2
Ashelford, K.E.3
Preston, S.J.4
Frimmersdorf, E.5
Campbell, B.J.6
Neal, T.J.7
Hall, N.8
Tuft, S.9
Kaye, S.B.10
Winstanley, C.11
-
22
-
-
80053578746
-
Draft genome sequences of two Pseudomonas aeruginosa clinical isolates with different antibiotic susceptibilities
-
Soares-Castro P, Marques D, Demyanchuk S, Faustino A, Santos PM: Draft genome sequences of two Pseudomonas aeruginosa clinical isolates with different antibiotic susceptibilities. J Bacteriol 2011,193(19):5573. 10.1128/JB.05446-11.
-
(2011)
J Bacteriol
, vol.193
, Issue.19
, pp. 5573
-
-
Soares-Castro, P.1
Marques, D.2
Demyanchuk, S.3
Faustino, A.4
Santos, P.M.5
-
23
-
-
84855840425
-
Complete genome sequence of highly multidrug-resistant Pseudomonas aeruginosa NCGM2.S1, a representative strain of a cluster endemic to Japan
-
Miyoshi Akiyama T, Kuwahara T, Tada T, Kitao T, Kirikae T: Complete genome sequence of highly multidrug-resistant Pseudomonas aeruginosa NCGM2.S1, a representative strain of a cluster endemic to Japan. J Bacteriol 2011,193(24):7010. 10.1128/JB.06312-11.
-
(2011)
J Bacteriol
, vol.193
, Issue.24
, pp. 7010
-
-
Miyoshi Akiyama, T.1
Kuwahara, T.2
Tada, T.3
Kitao, T.4
Kirikae, T.5
-
24
-
-
0034569064
-
[Transcriptional mapping and study of transcription regulation of the Pseudomonas aeruginosa phage-transposon D3112]
-
Bidnenko EM, Akhverdian VZ, Krylov VN: [Transcriptional mapping and study of transcription regulation of the Pseudomonas aeruginosa phage-transposon D3112]. Genetika 2000,36(12):1645-1655.
-
(2000)
Genetika
, vol.36
, Issue.12
, pp. 1645-1655
-
-
Bidnenko, E.M.1
Akhverdian, V.Z.2
Krylov, V.N.3
-
25
-
-
80355144418
-
Characterization of a newly discovered Mu-like bacteriophage, RcapMu, in Rhodobacter capsulatus strain SB1003
-
Fogg PC, Hynes AP, Digby E, Lang AS, Beatty JT: Characterization of a newly discovered Mu-like bacteriophage, RcapMu, in Rhodobacter capsulatus strain SB1003. Virology 2011,421(2):211-221. 10.1016/j.virol.2011.09.028.
-
(2011)
Virology
, vol.421
, Issue.2
, pp. 211-221
-
-
Fogg, P.C.1
Hynes, A.P.2
Digby, E.3
Lang, A.S.4
Beatty, J.T.5
-
26
-
-
2942585211
-
Burkholderia cenocepacia phage BcepMu and a family of Mu-like phages encoding potential pathogenesis factors
-
Summer EJ, Gonzalez CF, Carlisle T, Mebane LM, Cass AM, Savva CG, LiPuma J, Young R: Burkholderia cenocepacia phage BcepMu and a family of Mu-like phages encoding potential pathogenesis factors. J Mol Biol 2004,340(1):49-65. 10.1016/j.jmb.2004.04.053.
-
(2004)
J Mol Biol
, vol.340
, Issue.1
, pp. 49-65
-
-
Summer, E.J.1
Gonzalez, C.F.2
Carlisle, T.3
Mebane, L.M.4
Cass, A.M.5
Savva, C.G.6
LiPuma, J.7
Young, R.8
-
27
-
-
0018366829
-
Nucleotide sequences of the attachment sites of bacteriophage Mu DNA
-
Kahmann R, Kamp D: Nucleotide sequences of the attachment sites of bacteriophage Mu DNA. Nature 1979,280(5719):247-250. 10.1038/280247a0.
-
(1979)
Nature
, vol.280
, Issue.5719
, pp. 247-250
-
-
Kahmann, R.1
Kamp, D.2
-
28
-
-
0028279280
-
Transposase A binding sites in the attachment sites of bacteriophage Mu that are essential for the activity of the enhancer and A binding sites that promote transposition towards Fpro-lac
-
van Drunen CM, Mientjes E, van Zuylen O, van de Putte P, Goosen N: Transposase A binding sites in the attachment sites of bacteriophage Mu that are essential for the activity of the enhancer and A binding sites that promote transposition towards Fpro-lac. Nucleic Acids Res 1994,22(5):773-779. 10.1093/nar/22.5.773.
-
(1994)
Nucleic Acids Res
, vol.22
, Issue.5
, pp. 773-779
-
-
van Drunen, C.M.1
Mientjes, E.2
van Zuylen, O.3
van de Putte, P.4
Goosen, N.5
-
29
-
-
0035976791
-
Importance of the conserved CA dinucleotide at Mu termini
-
Lee I, Harshey RM: Importance of the conserved CA dinucleotide at Mu termini. J Mol Biol 2001,314(3):433-444. 10.1006/jmbi.2001.5177.
-
(2001)
J Mol Biol
, vol.314
, Issue.3
, pp. 433-444
-
-
Lee, I.1
Harshey, R.M.2
-
30
-
-
0037785140
-
The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly
-
Lee I, Harshey RM: The conserved CA/TG motif at Mu termini: T specifies stable transpososome assembly. J Mol Biol 2003,330(2):261-275. 10.1016/S0022-2836(03)00574-6.
-
(2003)
J Mol Biol
, vol.330
, Issue.2
, pp. 261-275
-
-
Lee, I.1
Harshey, R.M.2
-
31
-
-
55049125445
-
Comparative genomics: the bacterial pan-genome
-
Tettelin H, Riley D, Cattuto C, Medini D: Comparative genomics: the bacterial pan-genome. Curr Opin Microbiol 2008,11(5):472-477. 10.1016/j.mib.2008.09.006.
-
(2008)
Curr Opin Microbiol
, vol.11
, Issue.5
, pp. 472-477
-
-
Tettelin, H.1
Riley, D.2
Cattuto, C.3
Medini, D.4
-
33
-
-
0642312312
-
The source of laterally transferred genes in bacterial genomes
-
Daubin V, Lerat E, Perriere G: The source of laterally transferred genes in bacterial genomes. Genome Biol 2003,4(9):R57. 10.1186/gb-2003-4-9-r57.
-
(2003)
Genome Biol
, vol.4
, Issue.9
, pp. R57
-
-
Daubin, V.1
Lerat, E.2
Perriere, G.3
-
34
-
-
62449279140
-
Phage proteomics: applications of mass spectrometry
-
Lavigne R, Ceyssens PJ, Robben J: Phage proteomics: applications of mass spectrometry. Methods Mol Biol 2009, 502:239-251. 10.1007/978-1-60327-565-1_14.
-
(2009)
Methods Mol Biol
, vol.502
, pp. 239-251
-
-
Lavigne, R.1
Ceyssens, P.J.2
Robben, J.3
-
35
-
-
77954065271
-
I-TASSER: a unified platform for automated protein structure and function prediction
-
Roy A, Kucukural A, Zhang Y: I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 2010,5(4):725-738. 10.1038/nprot.2010.5.
-
(2010)
Nat Protoc
, vol.5
, Issue.4
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
36
-
-
24644450345
-
NMR solution structure of the monomeric form of the bacteriophage lambda capsid stabilizing protein gpD
-
Iwai H, Forrer P, Pluckthun A, Guntert P: NMR solution structure of the monomeric form of the bacteriophage lambda capsid stabilizing protein gpD. J Biomol NMR 2005,31(4):351-356. 10.1007/s10858-005-0945-7.
-
(2005)
J Biomol NMR
, vol.31
, Issue.4
, pp. 351-356
-
-
Iwai, H.1
Forrer, P.2
Pluckthun, A.3
Guntert, P.4
-
37
-
-
67349236770
-
The X-ray crystal structure of the phage lambda tail terminator protein reveals the biologically relevant hexameric ring structure and demonstrates a conserved mechanism of tail termination among diverse long-tailed phages
-
Pell LG, Liu A, Edmonds L, Donaldson LW, Howell PL, Davidson AR: The X-ray crystal structure of the phage lambda tail terminator protein reveals the biologically relevant hexameric ring structure and demonstrates a conserved mechanism of tail termination among diverse long-tailed phages. J Mol Biol 2009,389(5):938-951. 10.1016/j.jmb.2009.04.072.
-
(2009)
J Mol Biol
, vol.389
, Issue.5
, pp. 938-951
-
-
Pell, L.G.1
Liu, A.2
Edmonds, L.3
Donaldson, L.W.4
Howell, P.L.5
Davidson, A.R.6
-
38
-
-
47249162887
-
Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related
-
Barbirz S, Muller JJ, Uetrecht C, Clark AJ, Heinemann U, Seckler R: Crystal structure of Escherichia coli phage HK620 tailspike: podoviral tailspike endoglycosidase modules are evolutionarily related. Mol Microbiol 2008,69(2):303-316. 10.1111/j.1365-2958.2008.06311.x.
-
(2008)
Mol Microbiol
, vol.69
, Issue.2
, pp. 303-316
-
-
Barbirz, S.1
Muller, J.J.2
Uetrecht, C.3
Clark, A.J.4
Heinemann, U.5
Seckler, R.6
-
39
-
-
42949161202
-
An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6
-
Muller JJ, Barbirz S, Heinle K, Freiberg A, Seckler R, Heinemann U: An intersubunit active site between supercoiled parallel beta helices in the trimeric tailspike endorhamnosidase of Shigella flexneri Phage Sf6. Structure 2008,16(5):766-775. 10.1016/j.str.2008.01.019.
-
(2008)
Structure
, vol.16
, Issue.5
, pp. 766-775
-
-
Muller, J.J.1
Barbirz, S.2
Heinle, K.3
Freiberg, A.4
Seckler, R.5
Heinemann, U.6
-
40
-
-
65549169054
-
Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike
-
Xiang Y, Leiman PG, Li L, Grimes S, Anderson DL, Rossmann MG: Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike. Mol Cell 2009,34(3):375-386. 10.1016/j.molcel.2009.04.009.
-
(2009)
Mol Cell
, vol.34
, Issue.3
, pp. 375-386
-
-
Xiang, Y.1
Leiman, P.G.2
Li, L.3
Grimes, S.4
Anderson, D.L.5
Rossmann, M.G.6
-
41
-
-
84885202794
-
Bacteriophage virion-associated peptidoglycan hydrolases: potential new enzybiotics
-
Rodriguez Rubio L, Martinez B, Donovan DM, Rodriguez A, Garcia P: Bacteriophage virion-associated peptidoglycan hydrolases: potential new enzybiotics. Crit Rev Microbiol 2013,39(4):427-434. 10.3109/1040841X.2012.723675.
-
(2013)
Crit Rev Microbiol
, vol.39
, Issue.4
, pp. 427-434
-
-
Rodriguez Rubio, L.1
Martinez, B.2
Donovan, D.M.3
Rodriguez, A.4
Garcia, P.5
-
42
-
-
84865553519
-
Comparative genomics of Shiga toxin encoding bacteriophages
-
Smith DL, Rooks DJ, Fogg PC, Darby AC, Thomson NR, McCarthy AJ, Allison HE: Comparative genomics of Shiga toxin encoding bacteriophages. BMC Genomics 2012, 13:311. 10.1186/1471-2164-13-311.
-
(2012)
BMC Genomics
, vol.13
, pp. 311
-
-
Smith, D.L.1
Rooks, D.J.2
Fogg, P.C.3
Darby, A.C.4
Thomson, N.R.5
McCarthy, A.J.6
Allison, H.E.7
-
43
-
-
14644422590
-
Nucleotide sequence of the head assembly gene cluster of bacteriophage L and decoration protein characterization
-
Gilcrease EB, Winn-Stapley DA, Hewitt FC, Joss L, Casjens SR: Nucleotide sequence of the head assembly gene cluster of bacteriophage L and decoration protein characterization. J Bacteriol 2005,187(6):2050-2057. 10.1128/JB.187.6.2050-2057.2005.
-
(2005)
J Bacteriol
, vol.187
, Issue.6
, pp. 2050-2057
-
-
Gilcrease, E.B.1
Winn-Stapley, D.A.2
Hewitt, F.C.3
Joss, L.4
Casjens, S.R.5
-
44
-
-
3242673586
-
A fragile lattice: replacing bacteriophage lambda's head stability gene D with the shp gene of phage 21 generates the Mg2 + -dependent virus, lambda shp
-
Wendt JL, Feiss M: A fragile lattice: replacing bacteriophage lambda's head stability gene D with the shp gene of phage 21 generates the Mg2 + -dependent virus, lambda shp. Virology 2004,326(1):41-46. 10.1016/j.virol.2004.05.024.
-
(2004)
Virology
, vol.326
, Issue.1
, pp. 41-46
-
-
Wendt, J.L.1
Feiss, M.2
-
45
-
-
84905226955
-
Cementing proteins provide extra mechanical stabilization to viral cages
-
Hernando Perez M, Lambert S, Nakatani Webster E, Catalano CE, De Pablo PJ: Cementing proteins provide extra mechanical stabilization to viral cages. Nat Commun 2014, 5:4520.
-
(2014)
Nat Commun
, vol.5
, pp. 4520
-
-
Hernando Perez, M.1
Lambert, S.2
Nakatani Webster, E.3
Catalano, C.E.4
De Pablo, P.J.5
-
46
-
-
0017597092
-
The two dispensable structural proteins (soc and hoc) of the T4 phage capsid; their purification and properties, isolation and characterization of the defective mutants, and their binding with the defective heads in vitro
-
Ishii T, Yanagida M: The two dispensable structural proteins (soc and hoc) of the T4 phage capsid; their purification and properties, isolation and characterization of the defective mutants, and their binding with the defective heads in vitro. J Mol Biol 1977,109(4):487-514. 10.1016/S0022-2836(77)80088-0.
-
(1977)
J Mol Biol
, vol.109
, Issue.4
, pp. 487-514
-
-
Ishii, T.1
Yanagida, M.2
-
47
-
-
0027085892
-
Conformational changes of a viral capsid protein. Thermodynamic rationale for proteolytic regulation of bacteriophage T4 capsid expansion, co-operativity, and super-stabilization by soc binding
-
Steven AC, Greenstone HL, Booy FP, Black LW, Ross PD: Conformational changes of a viral capsid protein. Thermodynamic rationale for proteolytic regulation of bacteriophage T4 capsid expansion, co-operativity, and super-stabilization by soc binding. J Mol Biol 1992,228(3):870-884. 10.1016/0022-2836(92)90871-G.
-
(1992)
J Mol Biol
, vol.228
, Issue.3
, pp. 870-884
-
-
Steven, A.C.1
Greenstone, H.L.2
Booy, F.P.3
Black, L.W.4
Ross, P.D.5
-
48
-
-
44449148972
-
The lambda red proteins promote efficient recombination between diverged sequences: implications for bacteriophage genome mosaicism
-
Martinsohn JT, Radman M, Petit MA: The lambda red proteins promote efficient recombination between diverged sequences: implications for bacteriophage genome mosaicism. PLoS Genet 2008,4(5):e1000065. 10.1371/journal.pgen.1000065.
-
(2008)
PLoS Genet
, vol.4
, Issue.5
, pp. e1000065
-
-
Martinsohn, J.T.1
Radman, M.2
Petit, M.A.3
-
49
-
-
84884692246
-
Manipulating or superseding host recombination functions: a dilemma that shapes phage evolvability
-
Bobay LM, Touchon M, Rocha EP: Manipulating or superseding host recombination functions: a dilemma that shapes phage evolvability. PLoS Genet 2013,9(9):e1003825. 10.1371/journal.pgen.1003825.
-
(2013)
PLoS Genet
, vol.9
, Issue.9
, pp. e1003825
-
-
Bobay, L.M.1
Touchon, M.2
Rocha, E.P.3
-
50
-
-
84872607723
-
Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system
-
Bondy-Denomy J, Pawluk A, Maxwell KL, Davidson AR: Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system. Nature 2013,493(7432):429-432.
-
(2013)
Nature
, vol.493
, Issue.7432
, pp. 429-432
-
-
Bondy-Denomy, J.1
Pawluk, A.2
Maxwell, K.L.3
Davidson, A.R.4
-
51
-
-
84899866053
-
A New group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa
-
e00896-14
-
Pawluk A, Bondy Denomy J, Cheung VH, Maxwell KL, Davidson AR: A New group of phage anti-CRISPR genes inhibits the type I-E CRISPR-Cas system of Pseudomonas aeruginosa . MBio 2014,5(2):e00896-14.
-
(2014)
MBio
, vol.5
, Issue.2
-
-
Pawluk, A.1
Bondy Denomy, J.2
Cheung, V.H.3
Maxwell, K.L.4
Davidson, A.R.5
-
52
-
-
22544464152
-
The biology of restriction and anti-restriction
-
Tock MR, Dryden DT: The biology of restriction and anti-restriction. Curr Opin Microbiol 2005,8(4):466-472. 10.1016/j.mib.2005.06.003.
-
(2005)
Curr Opin Microbiol
, vol.8
, Issue.4
, pp. 466-472
-
-
Tock, M.R.1
Dryden, D.T.2
-
53
-
-
22544470014
-
War is peace-dispatches from the bacterial and phage killing fields
-
Comeau AM, Krisch HM: War is peace-dispatches from the bacterial and phage killing fields. Curr Opin Microbiol 2005,8(4):488-494. 10.1016/j.mib.2005.06.004.
-
(2005)
Curr Opin Microbiol
, vol.8
, Issue.4
, pp. 488-494
-
-
Comeau, A.M.1
Krisch, H.M.2
-
54
-
-
0026566361
-
The Rex system of bacteriophage lambda: tolerance and altruistic cell death
-
Parma DH, Snyder M, Sobolevski S, Nawroz M, Brody E, Gold L: The Rex system of bacteriophage lambda: tolerance and altruistic cell death. Genes Dev 1992,6(3):497-510. 10.1101/gad.6.3.497.
-
(1992)
Genes Dev
, vol.6
, Issue.3
, pp. 497-510
-
-
Parma, D.H.1
Snyder, M.2
Sobolevski, S.3
Nawroz, M.4
Brody, E.5
Gold, L.6
-
55
-
-
4944237752
-
Conserved translational frameshift in dsDNA bacteriophage tail assembly genes
-
Xu J, Hendrix RW, Duda RL: Conserved translational frameshift in dsDNA bacteriophage tail assembly genes. Mol Cell 2004,16(1):11-21. 10.1016/j.molcel.2004.09.006.
-
(2004)
Mol Cell
, vol.16
, Issue.1
, pp. 11-21
-
-
Xu, J.1
Hendrix, R.W.2
Duda, R.L.3
-
56
-
-
0003903343
-
Molecular Cloning: A Laboratory Manual. 3rd edition.
-
Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press;
-
Sambrook J, Russell DW: Molecular Cloning: A Laboratory Manual. 3rd edition. Cold Spring Harbor, N.Y.: Cold Spring Harbor Laboratory Press; 2001.
-
(2001)
-
-
Sambrook, J.1
Russell, D.W.2
-
57
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E: Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008,18(5):821-829. 10.1101/gr.074492.107.
-
(2008)
Genome Res
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
58
-
-
43349101058
-
Prokaryotic gene prediction using GeneMark and GeneMark.hmm
-
Borodovsky M, Mills R, Besemer J, Lomsadze A: Prokaryotic gene prediction using GeneMark and GeneMark.hmm. Curr Protoc Bioinform 2003, 4:4-5.
-
(2003)
Curr Protoc Bioinform
, vol.4
, pp. 4-5
-
-
Borodovsky, M.1
Mills, R.2
Besemer, J.3
Lomsadze, A.4
-
59
-
-
0036137327
-
A probabilistic method for identifying start codons in bacterial genomes
-
Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL: A probabilistic method for identifying start codons in bacterial genomes. Bioinformatics 2001,17(12):1123-1130. 10.1093/bioinformatics/17.12.1123.
-
(2001)
Bioinformatics
, vol.17
, Issue.12
, pp. 1123-1130
-
-
Suzek, B.E.1
Ermolaeva, M.D.2
Schreiber, M.3
Salzberg, S.L.4
-
60
-
-
56649123520
-
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
-
Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, Parkhill J, Rajandream MA: Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics 2008,24(23):2672-2676. 10.1093/bioinformatics/btn529.
-
(2008)
Bioinformatics
, vol.24
, Issue.23
, pp. 2672-2676
-
-
Carver, T.1
Berriman, M.2
Tivey, A.3
Patel, C.4
Bohme, U.5
Barrell, B.G.6
Parkhill, J.7
Rajandream, M.A.8
-
61
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997,25(17):3389-3402. 10.1093/nar/25.17.3389.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
62
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Database issue
-
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, et al.: InterPro: the integrative protein signature database. Nucleic Acids Res 2009,37(Database issue):D211-D215.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D211-D215
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Das, U.8
Daugherty, L.9
Duquenne, L.10
Finn, R.D.11
Gough, J.12
Haft, D.13
Hulo, N.14
Kahn, D.15
Kelly, E.16
Laugraud, A.17
Letunic, I.18
Lonsdale, D.19
Lopez, R.20
Madera, M.21
Maslen, J.22
McAnulla, C.23
McDowall, J.24
Mistry, J.25
Mitchell, A.26
Mulder, N.27
Natale, D.28
Orengo, C.29
Quinn, A.F.30
more..
-
63
-
-
78651285748
-
CDD: a conserved domain database for the functional annotation of proteins
-
Database issue
-
Marchler Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH: CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res 2010,39(Database issue):D225-D229.
-
(2010)
Nucleic Acids Res
, vol.39
, pp. D225-D229
-
-
Marchler Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
DeWeese Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
-
64
-
-
0034740227
-
Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome
-
Reese MG: Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput Chem 2001,26(1):51-56. 10.1016/S0097-8485(01)00099-7.
-
(2001)
Comput Chem
, vol.26
, Issue.1
, pp. 51-56
-
-
Reese, M.G.1
-
65
-
-
27944453600
-
Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes
-
Munch R, Hiller K, Grote A, Scheer M, Klein J, Schobert M, Jahn D: Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. Bioinformatics 2005,21(22):4187-4189. 10.1093/bioinformatics/bti635.
-
(2005)
Bioinformatics
, vol.21
, Issue.22
, pp. 4187-4189
-
-
Munch, R.1
Hiller, K.2
Grote, A.3
Scheer, M.4
Klein, J.5
Schobert, M.6
Jahn, D.7
-
66
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH: Open mass spectrometry search algorithm. J Proteome Res 2004,3(5):958-964. 10.1021/pr0499491.
-
(2004)
J Proteome Res
, vol.3
, Issue.5
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
67
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL: Versatile and open software for comparing large genomes. Genome Biol 2004,5(2):R12. 10.1186/gb-2004-5-2-r12.
-
(2004)
Genome Biol
, vol.5
, Issue.2
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.L.7
-
68
-
-
77956193448
-
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
Darling AE, Mau B, Perna NT: progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 2010,5(6):e11147. 10.1371/journal.pone.0011147.
-
(2010)
PLoS One
, vol.5
, Issue.6
, pp. e11147
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
|