메뉴 건너뛰기




Volumn 8492 LNBI, Issue , 2014, Pages 200-211

NovoGMET: De novo peptide sequencing using graphs with multiple edge types (GMET) for ETD/ECD Spectra

Author keywords

De novo peptide sequencing; ECD ETD spectra; fragment ion charge determination; graph with multiple edge types; peptide tags

Indexed keywords

AMINO ACIDS; BIOINFORMATICS; COMPUTATIONAL METHODS; MASS SPECTROMETRY;

EID: 84958525175     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-319-08171-7_18     Document Type: Conference Paper
Times cited : (5)

References (21)
  • 1
    • 13844275962 scopus 로고    scopus 로고
    • Mass spectrometry of peptides and proteins
    • Wysocki, V.H., Resing, K.A., Zhang, Q., Cheng, G.: Mass spectrometry of peptides and proteins. Methods 35(3), 211-222 (2005)
    • (2005) Methods , vol.35 , Issue.3 , pp. 211-222
    • Wysocki, V.H.1    Resing, K.A.2    Zhang, Q.3    Cheng, G.4
  • 2
    • 78649813107 scopus 로고    scopus 로고
    • ADEPTS: Advance peptide de novo sequencing with a pair of tandem mass spectra
    • He, L., Ma, B.: ADEPTS: advance peptide de novo sequencing with a pair of tandem mass spectra. Journal of Bioinformatics and Computational Biology 8, 981-994 (2010)
    • (2010) Journal of Bioinformatics and Computational Biology , vol.8 , pp. 981-994
    • He, L.1    Ma, B.2
  • 3
    • 55549086485 scopus 로고    scopus 로고
    • Analytical utility of small neutral losses from reduced species in electron capture dissociation studied using SwedECD database
    • Fälth, M., Savitski, M.M., Nielsen, M.L., Kjeldsen, F., Andren, P.E., Zubarev, R.A.: Analytical utility of small neutral losses from reduced species in electron capture dissociation studied using SwedECD database. Analytical Chemistry 80(21), 8089-8094 (2008)
    • (2008) Analytical Chemistry , vol.80 , Issue.21 , pp. 8089-8094
    • Fälth, M.1    Savitski, M.M.2    Nielsen, M.L.3    Kjeldsen, F.4    Andren, P.E.5    Zubarev, R.A.6
  • 4
    • 75649110103 scopus 로고    scopus 로고
    • Statistical analysis of Peptide electron transfer dissociation fragmentation mass spectrometry
    • Chalkley, R.J., Medzihradszky, K.F., Lynn, A.J., Baker, P.R., Burlingame, A.L.: Statistical analysis of Peptide electron transfer dissociation fragmentation mass spectrometry. Analytical Chemistry 82(2), 579-584 (2010)
    • (2010) Analytical Chemistry , vol.82 , Issue.2 , pp. 579-584
    • Chalkley, R.J.1    Medzihradszky, K.F.2    Lynn, A.J.3    Baker, P.R.4    Burlingame, A.L.5
  • 5
    • 3042789073 scopus 로고    scopus 로고
    • Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
    • Syka, J., Coon, J.: Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry. Proceedings of the National Academy of Sciences 101(26), 9528-9533 (2004)
    • (2004) Proceedings of the National Academy of Sciences , vol.101 , Issue.26 , pp. 9528-9533
    • Syka, J.1    Coon, J.2
  • 6
    • 0000944563 scopus 로고    scopus 로고
    • Electron capture dissociation of multiply charged protein cations. A nonergodic process
    • Zubarev, R., Kelleher, N.L., McLafferty, F.W.: Electron capture dissociation of multiply charged protein cations. A nonergodic process. Journal of the American Chemical Society 120(16), 3265-3266 (1998)
    • (1998) Journal of the American Chemical Society , vol.120 , Issue.16 , pp. 3265-3266
    • Zubarev, R.1    Kelleher, N.L.2    McLafferty, F.W.3
  • 8
    • 55849104839 scopus 로고    scopus 로고
    • Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications
    • Wiesner, J., Premsler, T., Sickmann, A.: Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications. Proteomics 8(21), 4466-4483 (2008)
    • (2008) Proteomics , vol.8 , Issue.21 , pp. 4466-4483
    • Wiesner, J.1    Premsler, T.2    Sickmann, A.3
  • 9
    • 84859222468 scopus 로고    scopus 로고
    • Electron transfer dissociation mass spectrometry in proteomics
    • Kim, M.S., Pandey, A.: Electron transfer dissociation mass spectrometry in proteomics. Proteomics 12(4-5), 530-542 (2012)
    • (2012) Proteomics , vol.12 , Issue.4-5 , pp. 530-542
    • Kim, M.S.1    Pandey, A.2
  • 10
    • 77950521889 scopus 로고    scopus 로고
    • A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
    • Pan, C., Park, B., McDonald,W., Carey, P., Banfield, J., VerBerkmoes, N., Hettich, R., Samatova, N.: A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinformatics 11(1), 118 (2010)
    • (2010) BMC Bioinformatics , vol.11 , Issue.1 , pp. 118
    • Pan, C.1    Park, B.2    McDonald, W.3    Carey, P.4    Banfield, J.5    Verberkmoes, N.6    Hettich, R.7    Samatova, N.8
  • 11
    • 55249118638 scopus 로고    scopus 로고
    • DirecTag: Accurate sequence tags from peptide MS/MS through statistical scoring
    • Tabb, D.L., Ma, Z.Q., Martin, D.B., Ham, A.J.L., Chambers, M.C.: DirecTag: Accurate sequence tags from peptide MS/MS through statistical scoring. Journal of Proteome Research 7(9), 3838-3846 (2008)
    • (2008) Journal of Proteome Research , vol.7 , Issue.9 , pp. 3838-3846
    • Tabb, D.L.1    Ma, Z.Q.2    Martin, D.B.3    Ham, A.J.L.4    Chambers, M.C.5
  • 12
    • 12344266755 scopus 로고    scopus 로고
    • Algorithms for de novo peptide sequencing using tandem mass spectrometry
    • Lu, B., Chen, T.: Algorithms for de novo peptide sequencing using tandem mass spectrometry. Drug Discovery Today: BIOSILICO 2(2), 85-90 (2004)
    • (2004) Drug Discovery Today: BIOSILICO , vol.2 , Issue.2 , pp. 85-90
    • Lu, B.1    Chen, T.2
  • 13
  • 16
    • 80052510666 scopus 로고    scopus 로고
    • Examining troughs in the mass distribution of all theoretically possible tryptic peptides
    • Nefedov, A.V., Mitra, I., Brasier, A.R., Sadygov, R.G.: Examining troughs in the mass distribution of all theoretically possible tryptic peptides. Journal of Proteome Research 10(9), 4150-4157 (2011)
    • (2011) Journal of Proteome Research , vol.10 , Issue.9 , pp. 4150-4157
    • Nefedov, A.V.1    Mitra, I.2    Brasier, A.R.3    Sadygov, R.G.4
  • 17
    • 84864592872 scopus 로고    scopus 로고
    • Reduction in database search space by utilization of amino acid composition information from electron transfer dissociation and higher-energy collisional dissociation mass spectra
    • Hansen, T.A., Kryuchkov, F., Kjeldsen, F.: Reduction in database search space by utilization of amino acid composition information from electron transfer dissociation and higher-energy collisional dissociation mass spectra. Analytical Chemistry 84(15), 6638-6645 (2012)
    • (2012) Analytical Chemistry , vol.84 , Issue.15 , pp. 6638-6645
    • Hansen, T.A.1    Kryuchkov, F.2    Kjeldsen, F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.