Statistical analysis of peptide electron transfer dissociation fragmentation mass spectrometry

Analytical Chemistry

Volumn 82, Issue 2, 2010, Pages 579-584

  Chalkley, R J ^a   Medzihradszky, K F ^a   Lynn, A J ^a   Baker, P R ^a   Burlingame, A L ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHARGE STATE; COLLISIONAL ACTIVATION; COMPLEX MIXTURE; ELECTRON CAPTURE DISSOCIATION; ELECTRON-TRANSFER DISSOCIATION; ENZYMATIC CLEAVAGE; FRAGMENTATION PROCESS; MASS SPECTROMETRIC ANALYSIS; NANOFLOWS; PROTEIN SEQUENCES; PROTONATED; STATISTICAL ANALYSIS; TRYPTIC PEPTIDES;

ACTIVATION ANALYSIS; ELECTRON TRANSITIONS; FREE RADICAL REACTIONS; MASS SPECTROMETERS; MASS SPECTROMETRY; PEPTIDES; STATISTICAL METHODS;

DISSOCIATION;

PEPTIDE; TRYPSIN;

ARTICLE; CHEMISTRY; ELECTRON TRANSPORT; ELECTROSPRAY MASS SPECTROMETRY; METABOLISM; METHODOLOGY; PROTEOMICS; STATISTICAL ANALYSIS;

DATA INTERPRETATION, STATISTICAL; ELECTRON TRANSPORT; PEPTIDES; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; TRYPSIN;

EID: 75649110103     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac9018582     Document Type: Article

References (22)

1. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
2. Medzihradszky, K. F. Methods Enzymol. 2005, 402, 209-244.
3. Kapp, E. A.; Schutz, F.; Reid, G. E.; Eddes, J. S.; Moritz, R. L.; O'Hair, R. A.; Speed, T. P.; Simpson, R. J. Anal. Chem. 2003, 75, 6251-6264.
4. Huang, Y.; Triscari, J. M.; Tseng, G. C.; Pasa-Tolic, L.; Lipton, M. S.; Smith, R. D.; Wysocki, V. H. Anal. Chem. 2005, 77, 5800-5813.
5. Wysocki, V. H.; Tsaprailis, G.; Smith, L. L.; Breci, L. A. J. Mass Spectrom. 2000, 35, 1399-1406.
6. Zubarev, R. A. Curr. Opin. Biotechnol. 2004, 15, 12-16.
7. Coon, J. J.; Shabanowitz, J.; Hunt, D. F.; Syka, J. E. 1. Am. Soc. Mass Spectrom. 2005, 16, 880-882.
8. Chi, A.; Huttenhower, C.; Geer, L. Y.; Coon, J. J.; Syka, J. E.; Bai, D. L.; Shabanowitz, J.; Burke, D. J.; Troyanskaya, O. G.; Hunt, D. F. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 2193-2198.
9. Taouatas, N.; Drugan, M. M.; Heck, A. J.; Mohammed, S. Nat. Methods 2008, 5, 405-407.
10. Zubarev, R. A.; Kelleher, N. L.; McLafferty, F. W. J. Am. Chem. Soc. 1998, 120, 3265-3266.
11. Cooper, H. J.; Hudgins, R. R.; Hakansson, K.; Marshall, A. G. J. Am. Soc. Mass Spectrom. 2002, 13, 241-249.
12. Fung, Y. M.; Chan, T. W. J. Am. Soc. Mass Spectrom. 2005, 16, 1523-1535.
13. Swaney, D. L.; McAlister, G. C.; Wirtala, M.; Schwartz, J. C.; Syka, J. E.; Coon, J. J. Anal. Chem. 2007, 79, 477-485.
14. Chi, A.; Bai, D. L.; Geer, L. Y.; Shabanowitz, J.; Hunt, D. F. Int. J. Mass Spectrom. 2007, 259, 197-203.
15. Kandasamy, K.; Pandey, A.; Molina, H. Anal. Chem. 2009, 81, 7170-7180.
16. Chalkley, R. J.; Thalhammer, A.; Schoepfer, R.; Burlingame, A. L. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 8894-8899.
17. Lynn, A. J.; Chalkley, R. J.; Baker, P. R.; Medzhiradszky, K. F.; Guan, S.; Burlingame, A. L., Denver, C. O. American Society for Mass Spectrometry, Santa Fe, NM, 2008.
18. Chalkley, R. J.; Baker, P. R.; Huang, L.; Hansen, K. C.; Allen, N. P.; Rexach, M.; Burlingame, A. L. Mol. Cell. Proteomics 2005, 4, 1194-1204.
19. Chalkley, R. J.; Baker, P. R.; Medzihradszky, K. F.; Lynn, A. J.; Burlingame, A. L. Mol. Cell. Proteomics 2008, 7, 2386-2398.
20. Chalkley, R. J.; Hansen, K. C.; Baldwin, M. A. Methods Enzymol. 2005, 402, 289-312.
21. Chalkley, R. J.; Baker, P. R.; Lynn, A. J.; Burlingame, A. L. Association of Biomolecular Resource Facilities, Abstract SR42-S2, 2009.
22. Paizs, B.; Suhai, S. Mass Spectrom. Rev. 2005, 24, 508-548.