-
1
-
-
73449149044
-
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
-
Gutenkunst RN, Hernandez RD, Williamson SH, Bustamante CD, Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data. PLoS Genet. 2009 10;5(10):e1000695. doi: 10.1371/journal.pgen.1000695 19851460
-
(2009)
PLoS Genet
, vol.5
, Issue.10
, pp. e1000695
-
-
Gutenkunst, R.N.1
Hernandez, R.D.2
Williamson, S.H.3
Bustamante, C.D.4
-
2
-
-
84958729848
-
-
Bhaskar A, Wang YXR, Song YS. Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data. bioRxiv. 2014;.
-
-
-
-
3
-
-
84887312794
-
Robust Demographic Inference from Genomic and SNP Data
-
Excoffier L, Dupanloup I, Huerta-Sanchez E, Sousa VC, Foll M, Robust Demographic Inference from Genomic and SNP Data. PLoS Genet. 2013 10;9(10):e1003905. doi: 10.1371/journal.pgen.1003905 24204310
-
(2013)
PLoS Genet
, vol.9
, Issue.10
, pp. e1003905
-
-
Excoffier, L.1
Dupanloup, I.2
Huerta-Sanchez, E.3
Sousa, V.C.4
Foll, M.5
-
4
-
-
79955434528
-
An Accurate Sequentially Markov Conditional Sampling Distribution for the Coalescent With Recombination
-
Paul JS, Steinrücken M, Song YS, An Accurate Sequentially Markov Conditional Sampling Distribution for the Coalescent With Recombination. Genetics. 2011;. doi: 10.1534/genetics.110.125534
-
(2011)
Genetics
-
-
Paul, J.S.1
Steinrücken, M.2
Song, Y.S.3
-
5
-
-
79960914105
-
Inference of human population history from individual whole-genome sequences
-
Li H, Durbin R, Inference of human population history from individual whole-genome sequences. Nature. 2011 July;475(7357):493–496. doi: 10.1038/nature10231 21753753
-
(2011)
Nature
, vol.475
, Issue.7357
, pp. 493-496
-
-
Li, H.1
Durbin, R.2
-
6
-
-
84905572361
-
Inferring human population size and separation history from multiple genome sequences
-
Schiffels S, Durbin R, Inferring human population size and separation history from multiple genome sequences. Nat Genet. 2014 Aug;46(8):919–925. doi: 10.1038/ng.3015 24952747
-
(2014)
Nat Genet
, vol.46
, Issue.8
, pp. 919-925
-
-
Schiffels, S.1
Durbin, R.2
-
7
-
-
0034118493
-
Inference of Population Structure Using Multilocus Genotype Data
-
Pritchard JK, Stephens M, Donnelly P, Inference of Population Structure Using Multilocus Genotype Data. Genetics. 2000 Jun;155(2):945–959. 10835412
-
(2000)
Genetics
, vol.155
, Issue.2
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
8
-
-
69749099417
-
Fast model-based estimation of ancestry in unrelated individuals
-
Alexander DH, Novembre J, Lange K, Fast model-based estimation of ancestry in unrelated individuals. Genome Research. 2009;19(9):1655–1664. doi: 10.1101/gr.094052.109 19648217
-
(2009)
Genome Research
, vol.19
, Issue.9
, pp. 1655-1664
-
-
Alexander, D.H.1
Novembre, J.2
Lange, K.3
-
9
-
-
84857477622
-
Inference of Population Structure using Dense Haplotype Data
-
Lawson DJ, Hellenthal G, Myers S, Falush D, Inference of Population Structure using Dense Haplotype Data. PLoS Genet. 2012 01;8(1):e1002453. doi: 10.1371/journal.pgen.1002453 22291602
-
(2012)
PLoS Genet
, vol.8
, Issue.1
, pp. e1002453
-
-
Lawson, D.J.1
Hellenthal, G.2
Myers, S.3
Falush, D.4
-
11
-
-
33846006923
-
Population Structure and Eigenanalysis
-
Patterson N, Price AL, Reich D, Population Structure and Eigenanalysis. PLoS Genet. 2006 12;2(12):e190. doi: 10.1371/journal.pgen.0020190 17194218
-
(2006)
PLoS Genet
, vol.2
, Issue.12
, pp. e190
-
-
Patterson, N.1
Price, A.L.2
Reich, D.3
-
12
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, Reich D, Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet. 2006 Aug;38(8):904–909. doi: 10.1038/ng1847 16862161
-
(2006)
Nat Genet
, vol.38
, Issue.8
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
13
-
-
0000156374
-
Phylogenetic Analysis: Models and Estimation Procedures
-
Cavalli-Sforza LL, Edwards AWF, Phylogenetic Analysis: Models and Estimation Procedures. Evolution. 1967;21(3):pp. 550–570. doi: 10.2307/2406616
-
(1967)
Evolution
, vol.21
, Issue.3
, pp. 550-570
-
-
Cavalli-Sforza, L.L.1
Edwards, A.W.F.2
-
14
-
-
0016564908
-
Analysis of evolution: Evolutionary rates, independence and treeness
-
Cavalli-Sforza LL, Piazza A, Analysis of evolution: Evolutionary rates, independence and treeness. Theoretical Population Biology. 1975;8(2):127–165. doi: 10.1016/0040-5809(75)90029-5 1198349
-
(1975)
Theoretical Population Biology
, vol.8
, Issue.2
, pp. 127-165
-
-
Cavalli-Sforza, L.L.1
Piazza, A.2
-
15
-
-
0020326103
-
How can we infer geography and history from gene frequencies?
-
Felsenstein J, How can we infer geography and history from gene frequencies? Journal of Theoretical Biology. 1982;96(1):9–20. doi: 10.1016/0022-5193(82)90152-7 7109659
-
(1982)
Journal of Theoretical Biology
, vol.96
, Issue.1
, pp. 9-20
-
-
Felsenstein, J.1
-
16
-
-
70349472875
-
Reconstructing Indian population history
-
Reich D, Thangaraj K, Patterson N, Price AL, Singh L, Reconstructing Indian population history. Nature. 2009 Sep;461(7263):489–494. doi: 10.1038/nature08365 19779445
-
(2009)
Nature
, vol.461
, Issue.7263
, pp. 489-494
-
-
Reich, D.1
Thangaraj, K.2
Patterson, N.3
Price, A.L.4
Singh, L.5
-
17
-
-
84869026948
-
Inference of population splits and mixtures from genome-wide allele frequency data
-
Pickrell JK, Pritchard JK, Inference of population splits and mixtures from genome-wide allele frequency data. PLoS Genet. 2012;8(11):e1002967. doi: 10.1371/journal.pgen.1002967 23166502
-
(2012)
PLoS Genet
, vol.8
, Issue.11
, pp. e1002967
-
-
Pickrell, J.K.1
Pritchard, J.K.2
-
18
-
-
84892372058
-
Efficient Moment-Based Inference of Admixture Parameters and Sources of Gene Flow
-
Lipson M, Loh PR, Levin A, Reich D, Patterson N, Berger B, Efficient Moment-Based Inference of Admixture Parameters and Sources of Gene Flow. Molecular Biology and Evolution. 2013 Aug;30(8):1788–1802. doi: 10.1093/molbev/mst099 23709261
-
(2013)
Molecular Biology and Evolution
, vol.30
, Issue.8
, pp. 1788-1802
-
-
Lipson, M.1
Loh, P.R.2
Levin, A.3
Reich, D.4
Patterson, N.5
Berger, B.6
-
19
-
-
0018080152
-
Synthetic maps of human gene frequencies in Europeans
-
Menozzi P, Piazza A, Cavalli-Sforza L, Synthetic maps of human gene frequencies in Europeans. Science. 1978 Sep;201(4358):786–792. doi: 10.1126/science.356262 356262
-
(1978)
Science
, vol.201
, Issue.4358
, pp. 786-792
-
-
Menozzi, P.1
Piazza, A.2
Cavalli-Sforza, L.3
-
20
-
-
73349108482
-
A Genealogical Interpretation of Principal Components Analysis
-
McVean G, A Genealogical Interpretation of Principal Components Analysis. PLoS Genet. 2009 Oct;5(10):e1000686. doi: 10.1371/journal.pgen.1000686 19834557
-
(2009)
PLoS Genet
, vol.5
, Issue.10
, pp. e1000686
-
-
McVean, G.1
-
21
-
-
55549115654
-
Genes mirror geography within Europe
-
Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, Auton A, et al. Genes mirror geography within Europe. Nature. 2008 Nov;456(7218):98–101. doi: 10.1038/nature07331 18758442
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 98-101
-
-
Novembre, J.1
Johnson, T.2
Bryc, K.3
Kutalik, Z.4
Boyko, A.R.5
Auton, A.6
-
22
-
-
84866145037
-
A Quantitative Comparison of the Similarity between Genes and Geography in Worldwide Human Populations
-
Wang C, Zöllner S, Rosenberg NA, A Quantitative Comparison of the Similarity between Genes and Geography in Worldwide Human Populations. PLoS Genet. 2012 08;8(8):e1002886. doi: 10.1371/journal.pgen.1002886 22927824
-
(2012)
PLoS Genet
, vol.8
, Issue.8
, pp. e1002886
-
-
Wang, C.1
Zöllner, S.2
Rosenberg, N.A.3
-
23
-
-
42649093791
-
Interpreting principal component analyses of spatial population genetic variation
-
Novembre J, Stephens M, Interpreting principal component analyses of spatial population genetic variation. Nature genetics. 2008 May;40(5):646–649. doi: 10.1038/ng.139 18425127
-
(2008)
Nature genetics
, vol.40
, Issue.5
, pp. 646-649
-
-
Novembre, J.1
Stephens, M.2
-
24
-
-
77952840471
-
Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture
-
Francois O, Currat M, Ray N, Han E, Excoffier L, Novembre J, Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture. Molecular Biology and Evolution. 2010;27(6):1257–1268. doi: 10.1093/molbev/msq010 20097660
-
(2010)
Molecular Biology and Evolution
, vol.27
, Issue.6
, pp. 1257-1268
-
-
Francois, O.1
Currat, M.2
Ray, N.3
Han, E.4
Excoffier, L.5
Novembre, J.6
-
25
-
-
84876132518
-
Correcting principal component maps for effects of spatial autocorrelation in population genetic data
-
Frichot E, Schoville SD, Bouchard G, Francois O, Correcting principal component maps for effects of spatial autocorrelation in population genetic data. Frontiers in Genetics. 2012;3(254). doi: 10.3389/fgene.2012.00254 23181073
-
(2012)
Frontiers in Genetics
, vol.3
, Issue.254
-
-
Frichot, E.1
Schoville, S.D.2
Bouchard, G.3
Francois, O.4
-
26
-
-
0016560402
-
Heterozygosity and relationship in regularly subdivided populations
-
Malécot G, Heterozygosity and relationship in regularly subdivided populations. Theoretical Population Biology. 1975;8(2):212–241. doi: 10.1016/0040-5809(75)90033-7 1198353
-
(1975)
Theoretical Population Biology
, vol.8
, Issue.2
, pp. 212-241
-
-
Malécot, G.1
-
27
-
-
0018120521
-
A diffusion model for geographically structured populations
-
Nagylaki T, A diffusion model for geographically structured populations. Journal of Mathematical Biology. 1978;6(4):375–382. doi: 10.1007/BF02463002
-
(1978)
Journal of Mathematical Biology
, vol.6
, Issue.4
, pp. 375-382
-
-
Nagylaki, T.1
-
28
-
-
0000672594
-
A Pain in the Torus: Some Difficulties with Models of Isolation by Distance
-
Felsenstein J, A Pain in the Torus: Some Difficulties with Models of Isolation by Distance. The American Naturalist. 1975;109(967):359–368. doi: 10.1086/283003
-
(1975)
The American Naturalist
, vol.109
, Issue.967
, pp. 359-368
-
-
Felsenstein, J.1
-
29
-
-
0036480996
-
Neutral Evolution in Spatially Continuous Populations
-
Barton NH, Depaulis F, Etheridge AM, Neutral Evolution in Spatially Continuous Populations. Theoretical Population Biology. 2002 February;61(1):31–48. doi: 10.1006/tpbi.2001.1557 11895381
-
(2002)
Theoretical Population Biology
, vol.61
, Issue.1
, pp. 31-48
-
-
Barton, N.H.1
Depaulis, F.2
Etheridge, A.M.3
-
30
-
-
84958729849
-
-
Petkova D, Novembre J, Stephens M. Visualizing spatial population structure with estimated effective migration surfaces. bioRxiv. 2014;.
-
-
-
-
31
-
-
0001024012
-
Isolation by distance
-
Wright S, Isolation by distance. Genetics. 1943;28(2):114–138. 17247074
-
(1943)
Genetics
, vol.28
, Issue.2
, pp. 114-138
-
-
Wright, S.1
-
32
-
-
84861998927
-
The trouble with isolation by distance
-
Meirmans PG, The trouble with isolation by distance. Molecular Ecology. 2012;21(12):2839–2846. doi: 10.1111/j.1365-294X.2012.05578.x 22574758
-
(2012)
Molecular Ecology
, vol.21
, Issue.12
, pp. 2839-2846
-
-
Meirmans, P.G.1
-
33
-
-
0036435078
-
Assessing population differentiation and isolation from single-nucleotide polymorphism data
-
Nicholson G, Smith AV, Jósson F, Gútafsson Ó, Stefásson K, Donnelly P, Assessing population differentiation and isolation from single-nucleotide polymorphism data. Journal Of The Royal Statistical Society Series B. 2002;64(4):695–715. doi: 10.1111/1467-9868.00357
-
(2002)
Journal Of The Royal Statistical Society Series B
, vol.64
, Issue.4
, pp. 695-715
-
-
Nicholson, G.1
Smith, A.V.2
Jósson, F.3
Gútafsson, Ó.4
Stefásson, K.5
Donnelly, P.6
-
35
-
-
6944244068
-
Assigning African elephant DNA to geographic region of origin: Applications to the ivory trade
-
Wasser SK, Shedlock AM, Comstock K, Ostrander E, Mutayoba B, Stephens M, Assigning African elephant DNA to geographic region of origin: Applications to the ivory trade. PNAS. 2004 Oct;101(41):14847–52. doi: 10.1073/pnas.0403170101 15459317
-
(2004)
PNAS
, vol.101
, Issue.41
, pp. 14847-14852
-
-
Wasser, S.K.1
Shedlock, A.M.2
Comstock, K.3
Ostrander, E.4
Mutayoba, B.5
Stephens, M.6
-
36
-
-
84886235499
-
Disentangling the effects of geographic and ecological isolation on genetic differentiation
-
Bradburd GS, Ralph PL, Coop GM, Disentangling the effects of geographic and ecological isolation on genetic differentiation. Evolution. 2013;67(11):3258–3273. doi: 10.1111/evo.12193 24102455
-
(2013)
Evolution
, vol.67
, Issue.11
, pp. 3258-3273
-
-
Bradburd, G.S.1
Ralph, P.L.2
Coop, G.M.3
-
37
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson RR, Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics. 2002;18(2):337–338. doi: 10.1093/bioinformatics/18.2.337 11847089
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 337-338
-
-
Hudson, R.R.1
-
39
-
-
0035905801
-
Speciation in a ring
-
Irwin DE, Bensch S, Price TD, Speciation in a ring. Nature. 2001 Jan;409(6818):333–337. doi: 10.1038/35053059 11201740
-
(2001)
Nature
, vol.409
, Issue.6818
, pp. 333-337
-
-
Irwin, D.E.1
Bensch, S.2
Price, T.D.3
-
40
-
-
12344307184
-
Speciation by distance in a ring species
-
Irwin DE, Staffan B, Irwin Jessica H, Price D Trevor, Speciation by distance in a ring species. Science. 2005 Jan;307(5708):414–416. doi: 10.1126/science.1105201 15662011
-
(2005)
Science
, vol.307
, Issue.5708
, pp. 414-416
-
-
Irwin, D.E.1
Staffan, B.2
Irwin Jessica, H.3
Price, D.T.4
-
41
-
-
38849130787
-
Call divergence is correlated with geographic and genetic distance in greenish warblers (Phylloscopus trochiloides): a strong role for stochasticity in signal evolution?
-
Irwin DE, Thimgan MP, Irwin JH, Call divergence is correlated with geographic and genetic distance in greenish warblers (Phylloscopus trochiloides): a strong role for stochasticity in signal evolution? Journal of Evolutionary Biology. 2008;21(2):435–448. doi: 10.1111/j.1420-9101.2007.01499.x 18205774
-
(2008)
Journal of Evolutionary Biology
, vol.21
, Issue.2
, pp. 435-448
-
-
Irwin, D.E.1
Thimgan, M.P.2
Irwin, J.H.3
-
45
-
-
0031811274
-
Taxonomy of the Plethodontid Salamander Genus Ensatina
-
Wake DB, Schneider CJ, Taxonomy of the Plethodontid Salamander Genus Ensatina. Herpetologica. 1998;54(2):pp. 279–298.
-
(1998)
Herpetologica
, vol.54
, Issue.2
, pp. 279-298
-
-
Wake, D.B.1
Schneider, C.J.2
-
46
-
-
84903774649
-
Genomic divergence in a ring species complex
-
Alcaide M, Scordato ESC, Price TD, Irwin DE, Genomic divergence in a ring species complex. Nature. 2014 July;511 (7507). doi: 10.1038/nature13285 24870239
-
(2014)
Nature
, vol.511
, Issue.7507
-
-
Alcaide, M.1
Scordato, E.S.C.2
Price, T.D.3
Irwin, D.E.4
-
47
-
-
84878314759
-
The Geography of Recent Genetic Ancestry across Europe
-
Ralph P, Coop G, The Geography of Recent Genetic Ancestry across Europe. PLoS Biol. 2013 05;11(5):e1001555. doi: 10.1371/journal.pbio.1001555 23667324
-
(2013)
PLoS Biol
, vol.11
, Issue.5
, pp. e1001555
-
-
Ralph, P.1
Coop, G.2
-
48
-
-
84860132302
-
Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe
-
Skoglund P, Malmström H, Raghavan M, Storå J, Hall P, Willerslev E, et al. Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe. Science. 2012;336(6080):466–469. doi: 10.1126/science.1216304 22539720
-
(2012)
Science
, vol.336
, Issue.6080
, pp. 466-469
-
-
Skoglund, P.1
Malmström, H.2
Raghavan, M.3
Storå, J.4
Hall, P.5
Willerslev, E.6
-
49
-
-
84906766045
-
Investigating Population History Using Temporal Genetic Differentiation
-
Skoglund P, Sjödin P, Skoglund T, Lascoux M, Jakobsson M, Investigating Population History Using Temporal Genetic Differentiation. Molecular Biology and Evolution. 2014 Sep;31(9):2516–2527. doi: 10.1093/molbev/msu192 24939468
-
(2014)
Molecular Biology and Evolution
, vol.31
, Issue.9
, pp. 2516-2527
-
-
Skoglund, P.1
Sjödin, P.2
Skoglund, T.3
Lascoux, M.4
Jakobsson, M.5
-
50
-
-
84893945338
-
A genetic atlas of human admixture history
-
Hellenthal G, Busby GB, Band G, Wilson JF, Capelli C, Falush D, et al. A genetic atlas of human admixture history. Science. 2014 Feb;343(6172):747–751. doi: 10.1126/science.1243518 24531965
-
(2014)
Science
, vol.343
, Issue.6172
, pp. 747-751
-
-
Hellenthal, G.1
Busby, G.B.2
Band, G.3
Wilson, J.F.4
Capelli, C.5
Falush, D.6
-
51
-
-
77954926596
-
Natural selection on EPAS1 (HIF2?) associated with low hemoglobin concentration in Tibetan highlanders
-
Beall CM, Cavalleri GL, Deng L, Elston RC, Gao Y, Knight J, et al. Natural selection on EPAS1 (HIF2?) associated with low hemoglobin concentration in Tibetan highlanders. Proceedings of the National Academy of Sciences. 2010;107(25):11459–11464. doi: 10.1073/pnas.1002443107
-
(2010)
Proceedings of the National Academy of Sciences
, vol.107
, Issue.25
, pp. 11459-11464
-
-
Beall, C.M.1
Cavalleri, G.L.2
Deng, L.3
Elston, R.C.4
Gao, Y.5
Knight, J.6
-
52
-
-
78049419228
-
Identifying Signatures of Natural Selection in Tibetan and Andean Populations Using Dense Genome Scan Data
-
Bigham A, Bauchet M, Pinto D, Mao X, Akey JM, Mei R, et al. Identifying Signatures of Natural Selection in Tibetan and Andean Populations Using Dense Genome Scan Data. PLoS Genet. 2010 09;6(9):e1001116. doi: 10.1371/journal.pgen.1001116 20838600
-
(2010)
PLoS Genet
, vol.6
, Issue.9
, pp. e1001116
-
-
Bigham, A.1
Bauchet, M.2
Pinto, D.3
Mao, X.4
Akey, J.M.5
Mei, R.6
-
53
-
-
77953231974
-
Abraham’s Children in the Genome Era: Major Jewish Diaspora Populations Comprise Distinct Genetic Clusters with Shared Middle Eastern Ancestry
-
Atzmon G, Hao L, Pe’er I, Velez C, Pearlman A, Palamara PF, et al. Abraham’s Children in the Genome Era: Major Jewish Diaspora Populations Comprise Distinct Genetic Clusters with Shared Middle Eastern Ancestry. The American Journal of Human Genetics. 2010;86(6):850–859. doi: 10.1016/j.ajhg.2010.04.015 20560205
-
(2010)
The American Journal of Human Genetics
, vol.86
, Issue.6
, pp. 850-859
-
-
Atzmon, G.1
Hao, L.2
Pe’er, I.3
Velez, C.4
Pearlman, A.5
Palamara, P.F.6
-
54
-
-
79955576507
-
The History of African Gene Flow into Southern Europeans, Levantines, and Jews
-
Moorjani P, Patterson N, Hirschhorn JN, Keinan A, Hao L, Atzmon G, et al. The History of African Gene Flow into Southern Europeans, Levantines, and Jews. PLoS Genet. 2011 Apr;7(4):e1001373. doi: 10.1371/journal.pgen.1001373 21533020
-
(2011)
PLoS Genet
, vol.7
, Issue.4
, pp. e1001373
-
-
Moorjani, P.1
Patterson, N.2
Hirschhorn, J.N.3
Keinan, A.4
Hao, L.5
Atzmon, G.6
-
55
-
-
34548292504
-
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
-
Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, et al. PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. The American Journal of Human Genetics. 2007;81(3):559–575. doi: 10.1086/519795 17701901
-
(2007)
The American Journal of Human Genetics
, vol.81
, Issue.3
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.R.5
Bender, D.6
-
56
-
-
84958729850
-
-
Purcell S. PLINK v1.07; 2009. http://pngu.mgh.harvard.edu/purcell/plink/
-
-
-
-
57
-
-
0037147189
-
Genetic structure of human populations
-
Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, et al. Genetic structure of human populations. Science (New York, NY). 2002 Dec;298(5602):2381–2385. doi: 10.1126/science.1078311
-
(2002)
Science (New York, NY)
, vol.298
, Issue.5602
, pp. 2381-2385
-
-
Rosenberg, N.A.1
Pritchard, J.K.2
Weber, J.L.3
Cann, H.M.4
Kidd, K.K.5
Zhivotovsky, L.A.6
-
58
-
-
39749181521
-
Worldwide human relationships inferred from genome-wide patterns of variation
-
Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, Ramachandran S, et al. Worldwide human relationships inferred from genome-wide patterns of variation. Science (New York, NY). 2008 Feb;319(5866):1100–1104. doi: 10.1126/science.1153717
-
(2008)
Science (New York, NY)
, vol.319
, Issue.5866
, pp. 1100-1104
-
-
Li, J.Z.1
Absher, D.M.2
Tang, H.3
Southwick, A.M.4
Casto, A.M.5
Ramachandran, S.6
-
59
-
-
84876362318
-
Inferring admixture histories of human populations using linkage disequilibrium
-
Loh PR, Lipson M, Patterson N, Moorjani P, Pickrell JK, Reich D, et al. Inferring admixture histories of human populations using linkage disequilibrium. Genetics. 2013 Apr;193(4):1233–1254. doi: 10.1534/genetics.112.147330 23410830
-
(2013)
Genetics
, vol.193
, Issue.4
, pp. 1233-1254
-
-
Loh, P.R.1
Lipson, M.2
Patterson, N.3
Moorjani, P.4
Pickrell, J.K.5
Reich, D.6
-
60
-
-
84869057650
-
Ancient Admixture in Human History
-
Patterson N, Moorjani P, Luo Y, Mallick S, Rohland N, Zhan Y, et al. Ancient Admixture in Human History. Genetics. 2012 Nov;192(3):1065–1093. doi: 10.1534/genetics.112.145037 22960212
-
(2012)
Genetics
, vol.192
, Issue.3
, pp. 1065-1093
-
-
Patterson, N.1
Moorjani, P.2
Luo, Y.3
Mallick, S.4
Rohland, N.5
Zhan, Y.6
-
61
-
-
0034575123
-
Genetic perspectives on human origins and differentiation
-
Harpending H, Rogers A, Genetic perspectives on human origins and differentiation. Annu Rev Genomics Hum Genet. 2000;1:361–385. doi: 10.1146/annurev.genom.1.1.361 11701634
-
(2000)
Annu Rev Genomics Hum Genet
, vol.1
, pp. 361-385
-
-
Harpending, H.1
Rogers, A.2
-
62
-
-
14744280512
-
Geography predicts neutral genetic diversity of human populations
-
Prugnolle F, Manica A, Balloux F, Geography predicts neutral genetic diversity of human populations. Current biology:CB. 2005 Mar;15(5):R159–R160. doi: 10.1016/j.cub.2005.02.038 15753023
-
(2005)
Current biology:CB
, vol.15
, Issue.5
, pp. R159-R160
-
-
Prugnolle, F.1
Manica, A.2
Balloux, F.3
-
63
-
-
27644509150
-
Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa
-
Ramachandran S, Deshpande O, Roseman CC, Rosenberg NA, Feldman MW, Cavalli-Sforza LL, Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proc Natl Acad Sci USA. 2005 Nov;102(44):15942–15947. doi: 10.1073/pnas.0507611102 16243969
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.44
, pp. 15942-15947
-
-
Ramachandran, S.1
Deshpande, O.2
Roseman, C.C.3
Rosenberg, N.A.4
Feldman, M.W.5
Cavalli-Sforza, L.L.6
-
64
-
-
84906818554
-
Toward a new history and geography of human genes informed by ancient DNA
-
Pickrell JK, Reich D, Toward a new history and geography of human genes informed by ancient DNA. Trends Genet. 2014 Sep;30(9):377–389. doi: 10.1016/j.tig.2014.07.007 25168683
-
(2014)
Trends Genet
, vol.30
, Issue.9
, pp. 377-389
-
-
Pickrell, J.K.1
Reich, D.2
-
65
-
-
84903487421
-
Early Back-to-Africa Migration into the Horn of Africa
-
Hodgson JA, Mulligan CJ, Al-Meeri A, Raaum RL, Early Back-to-Africa Migration into the Horn of Africa. PLoS Genet. 2014 Jun;10(6):e1004393. doi: 10.1371/journal.pgen.1004393 24921250
-
(2014)
PLoS Genet
, vol.10
, Issue.6
, pp. e1004393
-
-
Hodgson, J.A.1
Mulligan, C.J.2
Al-Meeri, A.3
Raaum, R.L.4
-
66
-
-
84869485944
-
The genetic prehistory of southern Africa
-
Pickrell JK, Patterson N, Barbieri C, Berthold F, Gerlach L, Guldemann T, et al. The genetic prehistory of southern Africa. Nat Commun. 2012;3:1143. doi: 10.1038/ncomms2140 23072811
-
(2012)
Nat Commun
, vol.3
, pp. 1143
-
-
Pickrell, J.K.1
Patterson, N.2
Barbieri, C.3
Berthold, F.4
Gerlach, L.5
Guldemann, T.6
-
67
-
-
84894349598
-
Ancient west Eurasian ancestry in southern and eastern Africa
-
Pickrell JK, Patterson N, Loh PR, Lipson M, Berger B, Stoneking M, et al. Ancient west Eurasian ancestry in southern and eastern Africa. Proc Natl Acad Sci USA. 2014 Feb;111(7):2632–2637. doi: 10.1073/pnas.1313787111 24550290
-
(2014)
Proc Natl Acad Sci USA
, vol.111
, Issue.7
, pp. 2632-2637
-
-
Pickrell, J.K.1
Patterson, N.2
Loh, P.R.3
Lipson, M.4
Berger, B.5
Stoneking, M.6
-
68
-
-
84867669367
-
Genomic variation in seven Khoe-San groups reveals adaptation and complex African history
-
Schlebusch CM, Skoglund P, Sjödin P, Gattepaille LM, Hernandez D, Jay F, et al. Genomic variation in seven Khoe-San groups reveals adaptation and complex African history. Science (New York, NY). 2012 Oct;338(6105):374–379. doi: 10.1126/science.1227721
-
(2012)
Science (New York, NY)
, vol.338
, Issue.6105
, pp. 374-379
-
-
Schlebusch, C.M.1
Skoglund, P.2
Sjödin, P.3
Gattepaille, L.M.4
Hernandez, D.5
Jay, F.6
-
69
-
-
84857462303
-
Genomic Ancestry of North Africans Supports Back-to-Africa Migrations
-
Henn BM, Botigué LR, Gravel S, Wang W, Brisbin A, Byrnes JK, et al. Genomic Ancestry of North Africans Supports Back-to-Africa Migrations. PLoS Genet. 2012 Jan;8(1):e1002397. doi: 10.1371/journal.pgen.1002397 22253600
-
(2012)
PLoS Genet
, vol.8
, Issue.1
, pp. e1002397
-
-
Henn, B.M.1
Botigué, L.R.2
Gravel, S.3
Wang, W.4
Brisbin, A.5
Byrnes, J.K.6
-
70
-
-
84880384231
-
Gene flow from North Africa contributes to differential human genetic diversity in southern Europe
-
Botigué LR, Henn BM, Gravel S, Maples BK, Gignoux CR, Corona E, et al. Gene flow from North Africa contributes to differential human genetic diversity in southern Europe. Proceedings of the National Academy of Sciences of the United States of America. 2013 Jul;110(29):11791–11796. doi: 10.1073/pnas.1306223110 23733930
-
(2013)
Proceedings of the National Academy of Sciences of the United States of America
, vol.110
, Issue.29
, pp. 11791-11796
-
-
Botigué, L.R.1
Henn, B.M.2
Gravel, S.3
Maples, B.K.4
Gignoux, C.R.5
Corona, E.6
-
71
-
-
51149090386
-
A Genome-wide Analysis of Admixture in Uyghurs and a High-Density Admixture Map for Disease-Gene Discovery
-
Xu S, Jin L, A Genome-wide Analysis of Admixture in Uyghurs and a High-Density Admixture Map for Disease-Gene Discovery. The American Journal of Human Genetics. 2008 Sep;83(3):322–336. doi: 10.1016/j.ajhg.2008.08.001 18760393
-
(2008)
The American Journal of Human Genetics
, vol.83
, Issue.3
, pp. 322-336
-
-
Xu, S.1
Jin, L.2
-
72
-
-
84883761016
-
Genetic Evidence for Recent Population Mixture in India
-
Moorjani P, Thangaraj K, Patterson N, Lipson M, Loh PR, Govindaraj P, et al. Genetic Evidence for Recent Population Mixture in India. American Journal of Human Genetics. 2013 Sep;93(3):422–438. doi: 10.1016/j.ajhg.2013.07.006 23932107
-
(2013)
American Journal of Human Genetics
, vol.93
, Issue.3
, pp. 422-438
-
-
Moorjani, P.1
Thangaraj, K.2
Patterson, N.3
Lipson, M.4
Loh, P.R.5
Govindaraj, P.6
-
73
-
-
84964313408
-
Spatial Localization of Recent Ancestors for Admixed Individuals
-
Yang WY, Platt A, Chiang CWK, Eskin E, Novembre J, Pasaniuc B, Spatial Localization of Recent Ancestors for Admixed Individuals. G3: Genes|Genomes|Genetics. 2014 Dec;4(12):2505–2518. doi: 10.1534/g3.114.014274 25371484
-
(2014)
G3: Genes|Genomes|Genetics
, vol.4
, Issue.12
, pp. 2505-2518
-
-
Yang, W.Y.1
Platt, A.2
Chiang, C.W.K.3
Eskin, E.4
Novembre, J.5
Pasaniuc, B.6
-
74
-
-
84861597739
-
A model-based approach for analysis of spatial structure in genetic data
-
Yang WY, Novembre J, Eskin E, Halperin E, A model-based approach for analysis of spatial structure in genetic data. Nature genetics. 2012 May;44(6):725–731. doi: 10.1038/ng.2285 22610118
-
(2012)
Nature genetics
, vol.44
, Issue.6
, pp. 725-731
-
-
Yang, W.Y.1
Novembre, J.2
Eskin, E.3
Halperin, E.4
-
75
-
-
79957563017
-
Principal warps: thin-plate splines and the decomposition of deformations
-
Bookstein FL, Principal warps: thin-plate splines and the decomposition of deformations. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 1989 Jun;11(6):567–585. doi: 10.1109/34.24792
-
(1989)
Pattern Analysis and Machine Intelligence, IEEE Transactions on
, vol.11
, Issue.6
, pp. 567-585
-
-
Bookstein, F.L.1
-
76
-
-
0000832522
-
Nonparametric Estimation of Nonstationary Spatial Covariance Structure
-
Sampson PD, Guttorp P, Nonparametric Estimation of Nonstationary Spatial Covariance Structure. Journal of the American Statistical Association. 1992;87(417):108–119. doi: 10.1080/01621459.1992.10475181
-
(1992)
Journal of the American Statistical Association
, vol.87
, Issue.417
, pp. 108-119
-
-
Sampson, P.D.1
Guttorp, P.2
-
77
-
-
84907803675
-
Ancient human genomes suggest three ancestral populations for present-day Europeans
-
Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, et al. Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature. 2014 Sep;513(7518):409–413. doi: 10.1038/nature13673 25230663
-
(2014)
Nature
, vol.513
, Issue.7518
, pp. 409-413
-
-
Lazaridis, I.1
Patterson, N.2
Mittnik, A.3
Renaud, G.4
Mallick, S.5
Kirsanow, K.6
-
78
-
-
0024209791
-
Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci
-
Chakraborty R, Weiss KM, Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci. Proceedings of the National Academy of Sciences of the United States of America. 1988 Dec;85(23):9119–9123. doi: 10.1073/pnas.85.23.9119 3194414
-
(1988)
Proceedings of the National Academy of Sciences of the United States of America
, vol.85
, Issue.23
, pp. 9119-9123
-
-
Chakraborty, R.1
Weiss, K.M.2
-
79
-
-
84862587557
-
Population Genetics Models of Local Ancestry
-
Gravel S, Population Genetics Models of Local Ancestry. Genetics. 2012 Jun;191(2):607–619. doi: 10.1534/genetics.112.139808 22491189
-
(2012)
Genetics
, vol.191
, Issue.2
, pp. 607-619
-
-
Gravel, S.1
-
80
-
-
34250717529
-
Stepping-Stone Spatial Structure Causes Slow Decay of Linkage Disequilibrium and Shifts the Site Frequency Spectrum
-
De A, Durrett R, Stepping-Stone Spatial Structure Causes Slow Decay of Linkage Disequilibrium and Shifts the Site Frequency Spectrum. Genetics. 2007;176(2):969–981. doi: 10.1534/genetics.107.071464 17409067
-
(2007)
Genetics
, vol.176
, Issue.2
, pp. 969-981
-
-
De, A.1
Durrett, R.2
-
81
-
-
84880702357
-
Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks
-
Barton NH, Etheridge AM, Kelleher J, Véber A, Inference in two dimensions: Allele frequencies versus lengths of shared sequence blocks. Theoretical Population Biology. 2013;87(0):105–119. Coalescent Theory doi: 10.1016/j.tpb.2013.03.001 23506734
-
(2013)
Theoretical Population Biology
, vol.87
, pp. 105-119
-
-
Barton, N.H.1
Etheridge, A.M.2
Kelleher, J.3
Véber, A.4
-
83
-
-
85055166148
-
-
Rosenthal JS, Brooks S, Gelman A, Jones GL, Meng XL, Optimal Proposal Distributions and Adaptive MCMC. In: Handbook of Markov Chain Monte Carlo. 1st ed. Handbooks of Modern Statistical Methods. Florida, USA: Chapman & Hall, CRC; 2011.
-
(2011)
Handbook of Markov Chain Monte Carlo. 1st ed. Handbooks of Modern Statistical Methods
-
-
Rosenthal, J.S.1
Brooks, S.2
Gelman, A.3
Jones, G.L.4
Meng, X.L.5
-
84
-
-
0031285157
-
Weak convergence and optimal scaling of random walk Metropolis algorithms
-
Roberts GO, Gelman A, Gilks WR, Weak convergence and optimal scaling of random walk Metropolis algorithms. Annals of Applied Probability. 1997;7:110–120. doi: 10.1214/aoap/1034625254
-
(1997)
Annals of Applied Probability
, vol.7
, pp. 110-120
-
-
Roberts, G.O.1
Gelman, A.2
Gilks, W.R.3
-
85
-
-
0013037129
-
Optimal scaling for various Metropolis-Hastings algorithms
-
Roberts GO, Rosenthal JS, Optimal scaling for various Metropolis-Hastings algorithms. Statist Sci. 2001;16(4):351–367. doi: 10.1214/ss/1015346320
-
(2001)
Statist Sci
, vol.16
, Issue.4
, pp. 351-367
-
-
Roberts, G.O.1
Rosenthal, J.S.2
|