-
1
-
-
84900328028
-
Electrofishing efficiency in low conductivity neotropical streams: Towards a non-destructive fish sampling method
-
Allard L, Grenouillet G, Khazraie K, et al,. (2014) Electrofishing efficiency in low conductivity neotropical streams: towards a non-destructive fish sampling method. Fisheries Management and Ecology, 21, 234-243.
-
(2014)
Fisheries Management and Ecology
, vol.21
, pp. 234-243
-
-
Allard, L.1
Grenouillet, G.2
Khazraie, K.3
-
2
-
-
84873738235
-
Development of a fish-based index to assess the eutrophication status of European lakes
-
Argillier C, Caussé S, Gevrey M, et al,. (2013) Development of a fish-based index to assess the eutrophication status of European lakes. Hydrobiologia, 704, 193-211.
-
(2013)
Hydrobiologia
, vol.704
, pp. 193-211
-
-
Argillier, C.1
Caussé, S.2
Gevrey, M.3
-
3
-
-
79952259978
-
Has the Earth's sixth mass extinction already arrived?
-
Barnosky AD, Matzke N, Tomiya S, et al,. (2011) Has the Earth's sixth mass extinction already arrived? Nature, 471, 51-57.
-
(2011)
Nature
, vol.471
, pp. 51-57
-
-
Barnosky, A.D.1
Matzke, N.2
Tomiya, S.3
-
4
-
-
77954336858
-
ITS as an environmental DNA barcode for fungi: An in silico approach reveals potential PCR biases
-
Bellemain E, Carlsen T, Brochmann C, et al,. (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiology, 10, 189.
-
(2010)
BMC Microbiology
, vol.10
, pp. 189
-
-
Bellemain, E.1
Carlsen, T.2
Brochmann, C.3
-
5
-
-
84888305715
-
IUCN and perspectives on biodiversity conservation in a changing world
-
Beumer C, Martens P, (2013) IUCN and perspectives on biodiversity conservation in a changing world. Biodiversity and Conservation, 22, 3105-3120.
-
(2013)
Biodiversity and Conservation
, vol.22
, pp. 3105-3120
-
-
Beumer, C.1
Martens, P.2
-
6
-
-
85028161389
-
Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)
-
Biggs J, Ewald N, Valentini A, et al,. (2015) Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus). Biological Conservation, 183, 19-28.
-
(2015)
Biological Conservation
, vol.183
, pp. 19-28
-
-
Biggs, J.1
Ewald, N.2
Valentini, A.3
-
7
-
-
84955199272
-
Obitools: A unix-inspired software package for DNA metabarcoding
-
Boyer F, Mercier C, Bonin A, et al,. (2015) obitools: a unix-inspired software package for DNA metabarcoding. Molecular Ecology Resources, doi: 10.1111/1755-0998.12428.
-
(2015)
Molecular Ecology Resources
-
-
Boyer, F.1
Mercier, C.2
Bonin, A.3
-
8
-
-
8744307994
-
Multimodel inference understanding AIC and BIC in model selection
-
Burnham KP, Anderson DR, (2004) Multimodel inference understanding AIC and BIC in model selection. Sociological Methods & Research, 33, 261-304.
-
(2004)
Sociological Methods & Research
, vol.33
, pp. 261-304
-
-
Burnham, K.P.1
Anderson, D.R.2
-
9
-
-
84859574767
-
Bioinformatic challenges for DNA metabarcoding of plants and animals
-
Coissac E, Riaz T, Puillandre N, (2012) Bioinformatic challenges for DNA metabarcoding of plants and animals. Molecular Ecology, 21, 1834-1847.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1834-1847
-
-
Coissac, E.1
Riaz, T.2
Puillandre, N.3
-
10
-
-
0034682945
-
Ancient DNA: Do it right or not at all
-
Cooper A, Poinar HN, (2000) Ancient DNA: do it right or not at all. Science, 289, 1139.
-
(2000)
Science
, vol.289
, pp. 1139
-
-
Cooper, A.1
Poinar, H.N.2
-
11
-
-
0026313879
-
Juvenile fishes as functional describers of fluvial ecosystem dynamics: Applications on the river Rhône, France
-
Copp GH, Oliver JM, Peňáz M, Roux AL, (1991) Juvenile fishes as functional describers of fluvial ecosystem dynamics: applications on the river Rhône, France. Regulated Rivers: Research & Management, 6, 135-145.
-
(1991)
Regulated Rivers: Research & Management
, vol.6
, pp. 135-145
-
-
Copp, G.H.1
Oliver, J.M.2
Peňáz, M.3
Roux, A.L.4
-
12
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks GE, Hon G, Chandonia J-M, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Research, 14, 1188-1190.
-
(2004)
Genome Research
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.-M.3
Brenner, S.E.4
-
13
-
-
44649181189
-
The IBTS database: A plea for quality control
-
Daan N, (2001) The IBTS database: a plea for quality control. ICES CM, 3, 1-5.
-
(2001)
ICES CM
, vol.3
, pp. 1-5
-
-
Daan, N.1
-
14
-
-
80053275663
-
From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments
-
Darling JA, Mahon AR, (2011) From molecules to management: adopting DNA-based methods for monitoring biological invasions in aquatic environments. Environmental Research, 111, 978-988.
-
(2011)
Environmental Research
, vol.111
, pp. 978-988
-
-
Darling, J.A.1
Mahon, A.R.2
-
15
-
-
84894242220
-
DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: Application to omnivorous diet
-
De Barba M, Miquel C, Boyer F, et al,. (2014) DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet. Molecular Ecology Resources, 14, 306-323.
-
(2014)
Molecular Ecology Resources
, vol.14
, pp. 306-323
-
-
De Barba, M.1
Miquel, C.2
Boyer, F.3
-
16
-
-
84919648788
-
DNA metabarcoding and the cytochrome c oxidase subunit i marker: Not a perfect match
-
Deagle BE, Jarman SN, Coissac E, Pompanon F, Taberlet P, (2014) DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match. Biology Letters, 10, 20140562.
-
(2014)
Biology Letters
, vol.10
, pp. 20140562
-
-
Deagle, B.E.1
Jarman, S.N.2
Coissac, E.3
Pompanon, F.4
Taberlet, P.5
-
17
-
-
84921929059
-
Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA
-
Deiner K, Walser J-C, Mächler E, Altermatt F, (2015) Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA. Biological Conservation, 183, 53-63.
-
(2015)
Biological Conservation
, vol.183
, pp. 53-63
-
-
Deiner, K.1
Walser, J.-C.2
Mächler, E.3
Altermatt, F.4
-
18
-
-
84863997760
-
Improved detection of an alien invasive species through environmental DNA barcoding: The example of the American bullfrog Lithobates catesbeianus
-
Dejean T, Valentini A, Miquel C, et al,. (2012) Improved detection of an alien invasive species through environmental DNA barcoding: the example of the American bullfrog Lithobates catesbeianus. Journal of Applied Ecology, 49, 953-959.
-
(2012)
Journal of Applied Ecology
, vol.49
, pp. 953-959
-
-
Dejean, T.1
Valentini, A.2
Miquel, C.3
-
20
-
-
84955198010
-
Quantification of mesocosm fish and amphibian species diversity via eDNA metabarcoding
-
Evans NT, Olds BP, Turner CR, et al,. (2015) Quantification of mesocosm fish and amphibian species diversity via eDNA metabarcoding. Molecular Ecology Resources, doi: 10.1111/1755-0998.12433.
-
(2015)
Molecular Ecology Resources
-
-
Evans, N.T.1
Olds, B.P.2
Turner, C.R.3
-
21
-
-
77954554269
-
An in silico approach for the evaluation of DNA barcodes
-
Ficetola GT, Coissac E, Zundel S, et al,. (2010) An in silico approach for the evaluation of DNA barcodes. BMC Genomics, 11, 434.
-
(2010)
BMC Genomics
, vol.11
, pp. 434
-
-
Ficetola, G.T.1
Coissac, E.2
Zundel, S.3
-
22
-
-
80052983206
-
Unmarked: An R package for fitting hierarchical models of wildlife occurrence and Abundance
-
Fiske I, Chandler R, (2011) Unmarked: an R package for fitting hierarchical models of wildlife occurrence and Abundance. Journal of Statistical Software, 43, 1-23.
-
(2011)
Journal of Statistical Software
, vol.43
, pp. 1-23
-
-
Fiske, I.1
Chandler, R.2
-
24
-
-
0000204255
-
Maternal inheritance of human mitochondrial DNA
-
Giles RE, Blanc H, Cann HM, Wallace DC, (1980) Maternal inheritance of human mitochondrial DNA. Proceedings of the National Academy of Sciences, USA, 77, 6715-6719.
-
(1980)
Proceedings of the National Academy of Sciences, USA
, vol.77
, pp. 6715-6719
-
-
Giles, R.E.1
Blanc, H.2
Cann, H.M.3
Wallace, D.C.4
-
26
-
-
84888440953
-
Passive capture techniques
-
(eds Zale A.V. Parrish D.L. Sutton T.M.), American Fisheries Society, Bethesda, Maryland
-
Hubert WA, Pope KL, Dettmers JM, (2012) Passive capture techniques. In: Fisheries Techniques (eds, Zale AV, Parrish DL, Sutton TM,), pp. 223-265. American Fisheries Society, Bethesda, Maryland.
-
(2012)
Fisheries Techniques
, pp. 223-265
-
-
Hubert, W.A.1
Pope, K.L.2
Dettmers, J.M.3
-
27
-
-
0003110488
-
Rainbow trout and brook trout mortality from high voltage AC electrofishing in a controlled environment
-
Hudy M, (1985) Rainbow trout and brook trout mortality from high voltage AC electrofishing in a controlled environment. North American Journal of Fisheries Management, 5, 475-479.
-
(1985)
North American Journal of Fisheries Management
, vol.5
, pp. 475-479
-
-
Hudy, M.1
-
28
-
-
84903287030
-
Harnessing DNA to improve environmental management
-
Kelly RP, Port JA, Yamahara KM, et al,. (2014a) Harnessing DNA to improve environmental management. Science, 344, 1455-1456.
-
(2014)
Science
, vol.344
, pp. 1455-1456
-
-
Kelly, R.P.1
Port, J.A.2
Yamahara, K.M.3
-
29
-
-
84898618580
-
Using environmental DNA to census marine fishes in a large mesocosm
-
Kelly RP, Port JA, Yamahara KM, Crowder LB, (2014b) Using environmental DNA to census marine fishes in a large mesocosm. PLoS ONE, 9, e86175.
-
(2014)
PLoS ONE
, vol.9
, pp. e86175
-
-
Kelly, R.P.1
Port, J.A.2
Yamahara, K.M.3
Crowder, L.B.4
-
30
-
-
57649115641
-
Imperfect detection and its consequences for monitoring for conservation
-
Kéry M, Schmidt BR, (2008) Imperfect detection and its consequences for monitoring for conservation. Community Ecology, 9, 207-216.
-
(2008)
Community Ecology
, vol.9
, pp. 207-216
-
-
Kéry, M.1
Schmidt, B.R.2
-
31
-
-
84921917001
-
Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix
-
Klymus KE, Richter CA, Chapman DC, Paukert C, (2015) Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix. Biological Conservation, 183, 77-84.
-
(2015)
Biological Conservation
, vol.183
, pp. 77-84
-
-
Klymus, K.E.1
Richter, C.A.2
Chapman, D.C.3
Paukert, C.4
-
32
-
-
0000989596
-
Estimating site occupancy rates when detection probabilities are less than one
-
MacKenzie DI, Nichols JD, Lachman GB, et al,. (2002) Estimating site occupancy rates when detection probabilities are less than one. Ecology, 83, 2248-2255.
-
(2002)
Ecology
, vol.83
, pp. 2248-2255
-
-
MacKenzie, D.I.1
Nichols, J.D.2
Lachman, G.B.3
-
33
-
-
84905649506
-
Meta-genomic surveillance of invasive species in the bait trade
-
Mahon AR, Nathan LR, Jerde CL, (2014) Meta-genomic surveillance of invasive species in the bait trade. Conservation Genetics Resources, 6, 563-567.
-
(2014)
Conservation Genetics Resources
, vol.6
, pp. 563-567
-
-
Mahon, A.R.1
Nathan, L.R.2
Jerde, C.L.3
-
34
-
-
0005529424
-
Selecting gear for monitoring fish assemblages
-
(ed. Cowx I.G.), Blackwell Science Ltd., Oxford
-
Miranda LE, Schramm HL, (2000) Selecting gear for monitoring fish assemblages. In: Management and Ecology of River Fisheries (ed., Cowx IG,), pp. 3-13. Blackwell Science Ltd., Oxford.
-
(2000)
Management and Ecology of River Fisheries
, pp. 3-13
-
-
Miranda, L.E.1
Schramm, H.L.2
-
35
-
-
84957454676
-
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: Detection of more than 230 subtropical marine species
-
Miya M, Sato Y, Fukunaga T, et al,. (2015) MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. Royal Society Open Science, 2, 150088.
-
(2015)
Royal Society Open Science
, vol.2
, pp. 150088
-
-
Miya, M.1
Sato, Y.2
Fukunaga, T.3
-
36
-
-
84922480438
-
Biodiversity: Life - A status report
-
Monastersky R, (2014) Biodiversity: life-a status report. Nature, 516, 158-161.
-
(2014)
Nature
, vol.516
, pp. 158-161
-
-
Monastersky, R.1
-
37
-
-
84901642271
-
The biodiversity of species and their rates of extinction, distribution, and protection
-
Pimm SL, Jenkins CN, Abell R, et al,. (2014) The biodiversity of species and their rates of extinction, distribution, and protection. Science, 344, 1246752.
-
(2014)
Science
, vol.344
, pp. 1246752
-
-
Pimm, S.L.1
Jenkins, C.N.2
Abell, R.3
-
38
-
-
42049112560
-
Widespread unidirectional transfer of mitochondrial DNA: A case in western Palaearctic water frogs
-
Plötner J, Uzzell T, Beerli P, et al,. (2008) Widespread unidirectional transfer of mitochondrial DNA: a case in western Palaearctic water frogs. Journal of Evolutionary Biology, 21, 668-681.
-
(2008)
Journal of Evolutionary Biology
, vol.21
, pp. 668-681
-
-
Plötner, J.1
Uzzell, T.2
Beerli, P.3
-
39
-
-
84859602598
-
Who is eating what: Diet assessment using next generation sequencing
-
Pompanon F, Deagle BE, Symondson WOC, et al,. (2012) Who is eating what: diet assessment using next generation sequencing. Molecular Ecology, 21, 1931-1950.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1931-1950
-
-
Pompanon, F.1
Deagle, B.E.2
Symondson, W.O.C.3
-
40
-
-
84863304598
-
-
R Core Team. R Foundation for Statistical Computing, Vienna, Austria
-
R Core Team (2014) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2014)
R: A Language and Environment for Statistical Computing
-
-
-
41
-
-
82255164364
-
EcoPrimers: Inference of new DNA barcode markers from whole genome sequence analysis
-
Riaz T, Shehzad W, Viari A, et al,. (2011) ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Nucleic Acids Research, 39, e145.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. e145
-
-
Riaz, T.1
Shehzad, W.2
Viari, A.3
-
42
-
-
36549064742
-
A review of existing fish assemblage indicators and methodologies
-
Roset N, Grenouillet G, Goffaux D, Pont D, Kestemont P, (2007) A review of existing fish assemblage indicators and methodologies. Fisheries Management and Ecology, 14, 393-405.
-
(2007)
Fisheries Management and Ecology
, vol.14
, pp. 393-405
-
-
Roset, N.1
Grenouillet, G.2
Goffaux, D.3
Pont, D.4
Kestemont, P.5
-
43
-
-
84455196041
-
The quality of name-based species records in databases
-
Santos AM, Branco M, (2012) The quality of name-based species records in databases. Trends in Ecology & Evolution, 27, 6-7.
-
(2012)
Trends in Ecology & Evolution
, vol.27
, pp. 6-7
-
-
Santos, A.M.1
Branco, M.2
-
44
-
-
84943579883
-
Tag jumps illuminated - Reducing sequence-to-sample misidentifications in metabarcoding studies
-
Schnell IB, Bohmann K, Gilbert MTP, (2015) Tag jumps illuminated-reducing sequence-to-sample misidentifications in metabarcoding studies. Molecular Ecology Resources, 15, 1289-1303.
-
(2015)
Molecular Ecology Resources
, vol.15
, pp. 1289-1303
-
-
Schnell, I.B.1
Bohmann, K.2
Gilbert, M.T.P.3
-
45
-
-
10044220678
-
Status and trends of amphibian declines and extinctions worldwide
-
Stuart SN, Chanson JS, Cox NA, et al,. (2004) Status and trends of amphibian declines and extinctions worldwide. Science, 306, 1783-1786.
-
(2004)
Science
, vol.306
, pp. 1783-1786
-
-
Stuart, S.N.1
Chanson, J.S.2
Cox, N.A.3
-
46
-
-
33847371187
-
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
-
Taberlet P, Coissac E, Pompanon F, et al,. (2007) Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding. Nucleic Acids Research, 35, e14.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. e14
-
-
Taberlet, P.1
Coissac, E.2
Pompanon, F.3
-
47
-
-
84859590042
-
Environmental DNA
-
Taberlet P, Coissac E, Hajibabaei M, Rieseberg LH, (2012) Environmental DNA. Molecular Ecology, 21, 1789-1793.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1789-1793
-
-
Taberlet, P.1
Coissac, E.2
Hajibabaei, M.3
Rieseberg, L.H.4
-
48
-
-
84860371200
-
Estimation of fish biomass using environmental DNA
-
Takahara T, Minamoto T, Yamanaka H, Doi H, Kawabata Z, (2012) Estimation of fish biomass using environmental DNA. PLoS ONE, 7, e35868.
-
(2012)
PLoS ONE
, vol.7
, pp. e35868
-
-
Takahara, T.1
Minamoto, T.2
Yamanaka, H.3
Doi, H.4
Kawabata, Z.5
-
49
-
-
82555175820
-
Population size influences amphibian detection probability: Implications for biodiversity monitoring programs
-
Tanadini LG, Schmidt BR, (2011) Population size influences amphibian detection probability: implications for biodiversity monitoring programs. PLoS ONE, 6, e28244.
-
(2011)
PLoS ONE
, vol.6
, pp. e28244
-
-
Tanadini, L.G.1
Schmidt, B.R.2
-
50
-
-
85028163034
-
Environmental DNA - An emerging tool in conservation for monitoring past and present biodiversity
-
Thomsen PF, Willerslev E, (2015) Environmental DNA-an emerging tool in conservation for monitoring past and present biodiversity. Biological Conservation, 183, 4-18.
-
(2015)
Biological Conservation
, vol.183
, pp. 4-18
-
-
Thomsen, P.F.1
Willerslev, E.2
-
51
-
-
84861563592
-
Monitoring endangered freshwater biodiversity using environmental DNA
-
Thomsen PF, Kielgast J, Iversen LL, et al,. (2012a) Monitoring endangered freshwater biodiversity using environmental DNA. Molecular Ecology, 21, 2565-2573.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2565-2573
-
-
Thomsen, P.F.1
Kielgast, J.2
Iversen, L.L.3
-
52
-
-
84865580050
-
Detection of a diverse marine fish fauna using environmental DNA from seawater samples
-
Thomsen PF, Kielgast J, Iversen LL, et al,. (2012b) Detection of a diverse marine fish fauna using environmental DNA from seawater samples. PLoS ONE, 7, e41732.
-
(2012)
PLoS ONE
, vol.7
, pp. e41732
-
-
Thomsen, P.F.1
Kielgast, J.2
Iversen, L.L.3
-
53
-
-
84904401917
-
Environmental DNA surveillance for invertebrate species: Advantages and technical limitations to detect invasive crayfish Procambarus clarkii in freshwater ponds
-
Tréguier A, Paillisson J-M, Dejean T, et al,. (2014) Environmental DNA surveillance for invertebrate species: advantages and technical limitations to detect invasive crayfish Procambarus clarkii in freshwater ponds. Journal of Applied Ecology, 51, 871-879.
-
(2014)
Journal of Applied Ecology
, vol.51
, pp. 871-879
-
-
Tréguier, A.1
Paillisson, J.-M.2
Dejean, T.3
-
54
-
-
0347003633
-
Taxonomy: Impediment or expedient?
-
Wheeler QD, Raven PH, Wilson EO, (2004) Taxonomy: impediment or expedient? Science, 303, 285.
-
(2004)
Science
, vol.303
, pp. 285
-
-
Wheeler, Q.D.1
Raven, P.H.2
Wilson, E.O.3
-
55
-
-
84922359193
-
-
WWF. (eds McLellan R. Iyengar L. Jeffries B. Oerlemans N.), WWF, Gland, Switzerland
-
WWF (2014) Living Planet Report 2014: Summary. (eds, McLellan R, Iyengar L, Jeffries B, Oerlemans N,), WWF, Gland, Switzerland.
-
(2014)
Living Planet Report 2014: Summary
-
-
-
56
-
-
84864289492
-
DNA from soil mirrors plant taxonomic and growth form diversity
-
Yoccoz NG, Bråthen KA, Gielly L, et al,. (2012) DNA from soil mirrors plant taxonomic and growth form diversity. Molecular Ecology, 21, 3647-3655.
-
(2012)
Molecular Ecology
, vol.21
, pp. 3647-3655
-
-
Yoccoz, N.G.1
Bråthen, K.A.2
Gielly, L.3
|