-
1
-
-
84859623044
-
Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity
-
Andersen K, Bird KL, Rasmussen M et al. (2012) Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity. Molecular Ecology, 21, 1966-1979.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1966-1979
-
-
Andersen, K.1
Bird, K.L.2
Rasmussen, M.3
-
2
-
-
84875214398
-
Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils
-
Baldwin DS, Colloff MJ, Rees GN et al. (2013) Impacts of inundation and drought on eukaryote biodiversity in semi-arid floodplain soils. Molecular Ecology, 22, 1746-1758.
-
(2013)
Molecular Ecology
, vol.22
, pp. 1746-1758
-
-
Baldwin, D.S.1
Colloff, M.J.2
Rees, G.N.3
-
3
-
-
84875893142
-
Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from Arctic permafrost
-
Bellemain E, Davey ML, Kauserud H et al. (2013) Fungal palaeodiversity revealed using high-throughput metabarcoding of ancient DNA from Arctic permafrost. Environmental Microbiology, 15, 1176-1189.
-
(2013)
Environmental Microbiology
, vol.15
, pp. 1176-1189
-
-
Bellemain, E.1
Davey, M.L.2
Kauserud, H.3
-
4
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nature Methods, 7, 335-336.
-
(2010)
Nature Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
-
5
-
-
77953353038
-
Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA
-
Chariton AA, Court LN, Hartley DM, Colloff MJ, Hardy CM (2010) Ecological assessment of estuarine sediments by pyrosequencing eukaryotic ribosomal DNA. Frontiers in Ecology and the Environment, 8, 233-238.
-
(2010)
Frontiers in Ecology and the Environment
, vol.8
, pp. 233-238
-
-
Chariton, A.A.1
Court, L.N.2
Hartley, D.M.3
Colloff, M.J.4
Hardy, C.M.5
-
6
-
-
84866760894
-
OligoTag: a program for designing sets of tags for next-generation sequencing of multiplexed samples
-
Coissac E (2012) OligoTag: a program for designing sets of tags for next-generation sequencing of multiplexed samples. Methods in Molecular Biology, 888, 13-31.
-
(2012)
Methods in Molecular Biology
, vol.888
, pp. 13-31
-
-
Coissac, E.1
-
7
-
-
84859574767
-
Bioinformatic challenges for DNA metabarcoding of plants and animals
-
Coissac E, Riaz T, Puillandre N (2012) Bioinformatic challenges for DNA metabarcoding of plants and animals. Molecular Ecology, 21, 1834-1847.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1834-1847
-
-
Coissac, E.1
Riaz, T.2
Puillandre, N.3
-
8
-
-
0022422660
-
Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984
-
Cornish-Bowden A (1985) Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984. Nucleic Acids Research, 13, 3021-3030.
-
(1985)
Nucleic Acids Research
, vol.13
, pp. 3021-3030
-
-
Cornish-Bowden, A.1
-
9
-
-
65449140394
-
Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces
-
Deagle BE, Kirkwood R, Jarman SN (2009) Analysis of Australian fur seal diet by pyrosequencing prey DNA in faeces. Molecular Ecology, 18, 2022-2038.
-
(2009)
Molecular Ecology
, vol.18
, pp. 2022-2038
-
-
Deagle, B.E.1
Kirkwood, R.2
Jarman, S.N.3
-
10
-
-
79961181125
-
Uchime improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) Uchime improves sensitivity and speed of chimera detection. Bioinformatics, 27, 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
11
-
-
0002841813
-
Recognition of patterns in genetic sequences
-
(eds Sankoff D, Kruskal JB Addison-Wesley, Reading, Massachusetts.
-
Erickson B, Sellers P (1983) Recognition of patterns in genetic sequences. In: Time Warps, String Edits and Macromolecules: The Theory and Practice of Sequence Comparison (eds Sankoff D, Kruskal JB), pp. 55-91. Addison-Wesley, Reading, Massachusetts.
-
(1983)
Time Warps, String Edits and Macromolecules: The Theory and Practice of Sequence Comparison
, pp. 55-91
-
-
Erickson, B.1
Sellers, P.2
-
12
-
-
77954554269
-
An in silico approach for the evaluation of DNA barcodes
-
Ficetola GF, Coissac E, Zundel S et al. (2010) An in silico approach for the evaluation of DNA barcodes. BMC Genomics, 11, 434.
-
(2010)
BMC Genomics
, vol.11
, pp. 434
-
-
Ficetola, G.F.1
Coissac, E.2
Zundel, S.3
-
13
-
-
25844449770
-
Galaxy: a platform for interactive large-scale genome analysis
-
Giardine B, Riemer C, Hardison RC et al. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Research, 15, 1451-1455.
-
(2005)
Genome Research
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
-
14
-
-
84875623291
-
The protist ribosomal reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy
-
Guillou L, Bachar D, Audic S et al. (2013) The protist ribosomal reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy. Nucleic Acids Research, 41, D597-D604.
-
(2013)
Nucleic Acids Research
, vol.41
, pp. D597-D604
-
-
Guillou, L.1
Bachar, D.2
Audic, S.3
-
15
-
-
84981755005
-
A one letter notation for amino acid sequence
-
IUPAC-IUB Commission on Biochemical Nomenclature (CBN) (1968) A one letter notation for amino acid sequence. European Journal of Biochemistry, 5, 151-153.
-
(1968)
European Journal of Biochemistry
, vol.5
, pp. 151-153
-
-
-
16
-
-
78651471796
-
Influence of management practices on large herbivore diet-case of European bison in Bialowiez˙a Primeval Forest (Poland)
-
Kowalczyk R, Taberlet P, Coissac E et al. (2011) Influence of management practices on large herbivore diet-case of European bison in Bialowiez˙a Primeval Forest (Poland). Forest Ecology and Management, 261, 821-828.
-
(2011)
Forest Ecology and Management
, vol.261
, pp. 821-828
-
-
Kowalczyk, R.1
Taberlet, P.2
Coissac, E.3
-
17
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman SB, Wunsch CD (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. Journal of Molecular Biology, 48, 443-453.
-
(1970)
Journal of Molecular Biology
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
18
-
-
84857678741
-
Glacial survival of boreal trees in northern Scandinavia
-
Parducci L, Jørgensen T, Tollefsrud MM et al. (2012) Glacial survival of boreal trees in northern Scandinavia. Science, 335, 1083-1086.
-
(2012)
Science
, vol.335
, pp. 1083-1086
-
-
Parducci, L.1
Jørgensen, T.2
Tollefsrud, M.M.3
-
19
-
-
37549027613
-
Silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K et al. (2007) Silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research, 35, 7188-7196.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
-
20
-
-
79251565226
-
Removing noise from pyrosequenced amplicons
-
Quince C, Lanzen A, Davenport RJ, Turnbaugh PJ (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics, 12, 38.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 38
-
-
Quince, C.1
Lanzen, A.2
Davenport, R.J.3
Turnbaugh, P.J.4
-
21
-
-
82255164364
-
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
-
Riaz T, Shehzad W, Viari A, Pompanon F, Taberlet P, Coissac E (2011) ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis. Nucleic Acids Research, 39, e145.
-
(2011)
Nucleic Acids Research
, vol.39
, pp. e145
-
-
Riaz, T.1
Shehzad, W.2
Viari, A.3
Pompanon, F.4
Taberlet, P.5
Coissac, E.6
-
22
-
-
78650499408
-
Using next-generation sequencing for molecular reconstruction of past arctic vegetation and climate
-
Sønstebø JH, Gielly L, Brysting AK et al. (2010) Using next-generation sequencing for molecular reconstruction of past arctic vegetation and climate. Molecular Ecology Resources, 10, 1009-1018.
-
(2010)
Molecular Ecology Resources
, vol.10
, pp. 1009-1018
-
-
Sønstebø, J.H.1
Gielly, L.2
Brysting, A.K.3
-
23
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75, 7537-7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
24
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL (2011) Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PloS One, 6, e27310.
-
(2011)
PloS One
, vol.6
, pp. e27310
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
25
-
-
84859617279
-
Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (prionailurus bengalensis) in Pakistan
-
Shehzad W, Riaz T, Nawaz MA et al. (2012) Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (prionailurus bengalensis) in Pakistan. Molecular Ecology, 21, 1951-1965.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1951-1965
-
-
Shehzad, W.1
Riaz, T.2
Nawaz, M.A.3
-
27
-
-
84859590042
-
Environmental DNA
-
Taberlet P, Coissac E, Hajibabaei M, Rieseberg LH (2012) Environmental DNA. Molecular Ecology, 21, 1789-1793.
-
(2012)
Molecular Ecology
, vol.21
, pp. 1789-1793
-
-
Taberlet, P.1
Coissac, E.2
Hajibabaei, M.3
Rieseberg, L.H.4
-
28
-
-
84861563592
-
Monitoring endangered freshwater biodiversity using environmental DNA
-
Thomsen PF, Kielgast J, Iversen LL et al. (2012) Monitoring endangered freshwater biodiversity using environmental DNA. Molecular Ecology, 21, 2565-2573.
-
(2012)
Molecular Ecology
, vol.21
, pp. 2565-2573
-
-
Thomsen, P.F.1
Kielgast, J.2
Iversen, L.L.3
-
29
-
-
58949104467
-
New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach
-
Valentini A, Miquel C, Nawaz MA et al. (2009) New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach. Molecular Ecology Resources, 9, 51-60.
-
(2009)
Molecular Ecology Resources
, vol.9
, pp. 51-60
-
-
Valentini, A.1
Miquel, C.2
Nawaz, M.A.3
-
30
-
-
84856186358
-
DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences
-
Wright ES, Yilmaz LS, Noguera DR (2012) DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Applied and Environmental Microbiology, 78, 717-725.
-
(2012)
Applied and Environmental Microbiology
, vol.78
, pp. 717-725
-
-
Wright, E.S.1
Yilmaz, L.S.2
Noguera, D.R.3
-
31
-
-
84864289492
-
DNA from soil mirrors plant taxonomic and growth form diversity
-
Yoccoz NG, Bråthen KA, Gielly L et al. (2012) DNA from soil mirrors plant taxonomic and growth form diversity. Molecular Ecology, 21, 3647-3655.
-
(2012)
Molecular Ecology
, vol.21
, pp. 3647-3655
-
-
Yoccoz, N.G.1
Bråthen, K.A.2
Gielly, L.3
|