-
1
-
-
0015498805
-
C-type virus associated with gibbon lymphosarcoma
-
Kawakami TG, Huff SD, Buckley PM, Dungworth DL, Synder SP, Gilden RV. 1972. C-type virus associated with gibbon lymphosarcoma. Nat New Biol 235:170-171. http://dx.doi.org/10.1038/newbio235170a0.
-
(1972)
Nat New Biol
, vol.235
, pp. 170-171
-
-
Kawakami, T.G.1
Huff, S.D.2
Buckley, P.M.3
Dungworth, D.L.4
Synder, S.P.5
Gilden, R.V.6
-
2
-
-
0015831196
-
Lymphosarcomas in two gibbons (Hylobates lar) with associated C-type virus
-
Snyder SP, Dungworth DL, Kawakami TG, Callaway E, Lau DT. 1973. Lymphosarcomas in two gibbons (Hylobates lar) with associated C-type virus. J Natl Cancer Inst 51:89-94.
-
(1973)
J Natl Cancer Inst
, vol.51
, pp. 89-94
-
-
Snyder, S.P.1
Dungworth, D.L.2
Kawakami, T.G.3
Callaway, E.4
Lau, D.T.5
-
4
-
-
0016203344
-
Antigenic studies on gibbon type-C viruses
-
Kawakami TG, Buckley PM. 1974. Antigenic studies on gibbon type-C viruses. Transplant Proc 6:193-196.
-
(1974)
Transplant Proc
, vol.6
, pp. 193-196
-
-
Kawakami, T.G.1
Buckley, P.M.2
-
5
-
-
0017844503
-
Isolation and tissue distribution of type-C virus and viral components from a gibbon ape (Hylobates lar) with lymphocytic leukemia
-
Gallo RC, Gallagher RE, Wong-Staal F, Aoki T, Markham PD, Schetters H, Ruscetti F, Valerio M, Walling MJ, O'Keeffe RT, Saxinger WC, Smith RG, Gillespie DH, Reitz MS, Jr. 1978. Isolation and tissue distribution of type-C virus and viral components from a gibbon ape (Hylobates lar) with lymphocytic leukemia. Virology 84:359-373. http://dx.doi.org/10.1016/0042-6822(78)90255-6.
-
(1978)
Virology
, vol.84
, pp. 359-373
-
-
Gallo, R.C.1
Gallagher, R.E.2
Wong-Staal, F.3
Aoki, T.4
Markham, P.D.5
Schetters, H.6
Ruscetti, F.7
Valerio, M.8
Walling, M.J.9
O'Keeffe, R.T.10
Saxinger, W.C.11
Smith, R.G.12
Gillespie, D.H.13
Reitz, M.S.14
-
6
-
-
0018338860
-
Gibbon ape leukemia virus-Hall's Island: new strain of gibbon ape leukemia virus
-
Reitz MS, Jr, Wong-Staal J-F, Haseltine WA, Kleid DG, Trainor CD, Gallagher RE, Gallo RC. 1979. Gibbon ape leukemia virus-Hall's Island: new strain of gibbon ape leukemia virus. J Virol 29:395-400.
-
(1979)
J Virol
, vol.29
, pp. 395-400
-
-
Reitz, M.S.1
Wong-Staal, J.-F.2
Haseltine, W.A.3
Kleid, D.G.4
Trainor, C.D.5
Gallagher, R.E.6
Gallo, R.C.7
-
7
-
-
0016753946
-
Infectious primate type C viruses: three isolates belonging to a new subgroup from the brains of normal gibbons
-
Todaro GJ, Lieber MM, Benveniste RE, Sherr CJ. 1975. Infectious primate type C viruses: three isolates belonging to a new subgroup from the brains of normal gibbons. Virology 67:335-343. http://dx.doi.org/10.1016/0042-6822(75)90435-3.
-
(1975)
Virology
, vol.67
, pp. 335-343
-
-
Todaro, G.J.1
Lieber, M.M.2
Benveniste, R.E.3
Sherr, C.J.4
-
8
-
-
0018844578
-
Oncogenicity of gibbon type-C myelogenous leukemia virus
-
Kawakami TG, Kollias GV, Jr, Holmberg C. 1980. Oncogenicity of gibbon type-C myelogenous leukemia virus. Int J Cancer 25:641-646. http://dx.doi.org/10.1002/ijc.2910250514.
-
(1980)
Int J Cancer
, vol.25
, pp. 641-646
-
-
Kawakami, T.G.1
Kollias, G.V.2
Holmberg, C.3
-
9
-
-
0015139670
-
C-type virus in tumor tissue of a woolly monkey (Lagothrix spp.) with fibrosarcoma
-
Theilen GH, Gould D, Fowler M, Dungworth DL. 1971. C-type virus in tumor tissue of a woolly monkey (Lagothrix spp.) with fibrosarcoma. J Natl Cancer Inst 47:881-889.
-
(1971)
J Natl Cancer Inst
, vol.47
, pp. 881-889
-
-
Theilen, G.H.1
Gould, D.2
Fowler, M.3
Dungworth, D.L.4
-
10
-
-
0015355446
-
Simian sarcoma virus, type 1 (Lagothrix): focus assay and demonstration of nontransforming associated virus
-
Wolfe LG, Smith RK, Deinhardt F. 1972. Simian sarcoma virus, type 1 (Lagothrix): focus assay and demonstration of nontransforming associated virus. J Natl Cancer Inst 48:1905-1908.
-
(1972)
J Natl Cancer Inst
, vol.48
, pp. 1905-1908
-
-
Wolfe, L.G.1
Smith, R.K.2
Deinhardt, F.3
-
11
-
-
0016774399
-
Antigenic determinants of the 70,000 molecular weight glycoprotein of woolly monkey type C RNA virus
-
Hino S, Stephenson JR, Aaronson SA. 1975. Antigenic determinants of the 70,000 molecular weight glycoprotein of woolly monkey type C RNA virus. J Immunol 115:922-927.
-
(1975)
J Immunol
, vol.115
, pp. 922-927
-
-
Hino, S.1
Stephenson, J.R.2
Aaronson, S.A.3
-
12
-
-
0015966348
-
Antigenic relatedness of simian C-type viruses
-
Rangan SR. 1974. Antigenic relatedness of simian C-type viruses. Int J Cancer 13:64-70. http://dx.doi.org/10.1002/ijc.2910130108.
-
(1974)
Int J Cancer
, vol.13
, pp. 64-70
-
-
Rangan, S.R.1
-
13
-
-
0018409428
-
Mapping of related and nonrelated sequences of RNA from woolly monkey virus and gibbon ape leukemia virus
-
Reitz MS, Jr, Luczak JC, Gallo RC. 1979. Mapping of related and nonrelated sequences of RNA from woolly monkey virus and gibbon ape leukemia virus. Virology 93:48-56. http://dx.doi.org/10.1016/0042-6822(79)90274-5.
-
(1979)
Virology
, vol.93
, pp. 48-56
-
-
Reitz, M.S.1
Luczak, J.C.2
Gallo, R.C.3
-
14
-
-
0024434369
-
Genetic organization of gibbon ape leukemia virus
-
Delassus S, Sonigo P, Wain-Hobson S. 1989. Genetic organization of gibbon ape leukemia virus. Virology 173:205-213. http://dx.doi.org/10.1016/0042-6822(89)90236-5.
-
(1989)
Virology
, vol.173
, pp. 205-213
-
-
Delassus, S.1
Sonigo, P.2
Wain-Hobson, S.3
-
15
-
-
0034630135
-
A hyperfusogenic gibbon ape leukemia envelope glycoprotein: targeting of a cytotoxic gene by ligand display
-
Fielding AK, Chapel-Fernandes S, Chadwick MP, Bullough FJ, Cosset FL, Russell SJ. 2000. A hyperfusogenic gibbon ape leukemia envelope glycoprotein: targeting of a cytotoxic gene by ligand display. Hum Gene Ther 11:817-826. http://dx.doi.org/10.1089/10430340050015437.
-
(2000)
Hum Gene Ther
, vol.11
, pp. 817-826
-
-
Fielding, A.K.1
Chapel-Fernandes, S.2
Chadwick, M.P.3
Bullough, F.J.4
Cosset, F.L.5
Russell, S.J.6
-
16
-
-
0034653696
-
Fusogenic membrane glycoproteins as a novel class of genes for the local and immune-mediated control of tumor growth
-
Bateman A, Bullough F, Murphy S, Emiliusen L, Lavillette D, Cosset FL, Cattaneo R, Russell SJ, Vile RG. 2000. Fusogenic membrane glycoproteins as a novel class of genes for the local and immune-mediated control of tumor growth. Cancer Res 60:1492-1497.
-
(2000)
Cancer Res
, vol.60
, pp. 1492-1497
-
-
Bateman, A.1
Bullough, F.2
Murphy, S.3
Emiliusen, L.4
Lavillette, D.5
Cosset, F.L.6
Cattaneo, R.7
Russell, S.J.8
Vile, R.G.9
-
17
-
-
0027350996
-
Isolation of a C-type retrovirus from an HIV infected cell line
-
Burtonboy G, Delferriere N, Mousset B, Heusterspreute M. 1993. Isolation of a C-type retrovirus from an HIV infected cell line. Arch Virol 130:289-300. http://dx.doi.org/10.1007/BF01309661.
-
(1993)
Arch Virol
, vol.130
, pp. 289-300
-
-
Burtonboy, G.1
Delferriere, N.2
Mousset, B.3
Heusterspreute, M.4
-
18
-
-
0031927219
-
Characterization of a C-type retrovirus isolated from an HIV infected cell line: complete nucleotide sequence
-
Parent I, Qin Y, Vandenbroucke AT, Walon C, Delferriere N, Godfroid E, Burtonboy G. 1998. Characterization of a C-type retrovirus isolated from an HIV infected cell line: complete nucleotide sequence. Arch Virol 143:1077-1092. http://dx.doi.org/10.1007/s007050050357.
-
(1998)
Arch Virol
, vol.143
, pp. 1077-1092
-
-
Parent, I.1
Qin, Y.2
Vandenbroucke, A.T.3
Walon, C.4
Delferriere, N.5
Godfroid, E.6
Burtonboy, G.7
-
19
-
-
0031797723
-
Simian sarcoma-associated virus fails to infect Chinese hamster cells despite the presence of functional gibbon ape leukemia virus receptors
-
Ting YT, Wilson CA, Farrell KB, Chaudry GJ, Eiden MV. 1998. Simian sarcoma-associated virus fails to infect Chinese hamster cells despite the presence of functional gibbon ape leukemia virus receptors. J Virol 72: 9453-9458.
-
(1998)
J Virol
, vol.72
, pp. 9453-9458
-
-
Ting, Y.T.1
Wilson, C.A.2
Farrell, K.B.3
Chaudry, G.J.4
Eiden, M.V.5
-
20
-
-
0034004490
-
The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus: a novel type C endogenous virus related to Gibbon ape leukemia virus
-
Hanger JJ, Bromham LD, McKee JJ, O'Brien TM, Robinson WF. 2000. The nucleotide sequence of koala (Phascolarctos cinereus) retrovirus: a novel type C endogenous virus related to Gibbon ape leukemia virus. J Virol 74:4264-4272. http://dx.doi.org/10.1128/JVI.74.9.4264-4272.2000.
-
(2000)
J Virol
, vol.74
, pp. 4264-4272
-
-
Hanger, J.J.1
Bromham, L.D.2
McKee, J.J.3
O'Brien, T.M.4
Robinson, W.F.5
-
21
-
-
84907452289
-
Discovery of a novel retrovirus sequence in an Australian native rodent (Melomys burtoni): a putative link between gibbon ape leukemia virus and koala retrovirus
-
Simmons G, Clarke D, McKee J, Young P, Meers J. 2014. Discovery of a novel retrovirus sequence in an Australian native rodent (Melomys burtoni): a putative link between gibbon ape leukemia virus and koala retrovirus. PLoS One 9:e106954. http://dx.doi.org/10.1371/journal.pone.0106954.
-
(2014)
PLoS One
, vol.9
-
-
Simmons, G.1
Clarke, D.2
McKee, J.3
Young, P.4
Meers, J.5
-
22
-
-
78649512174
-
Multiplexed DNA sequence capture of mitochondrial genomes using PCR products
-
Maricic T, Whitten M, Paabo S. 2010. Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS One 5:e14004. http://dx.doi.org/10.1371/journal.pone.0014004.
-
(2010)
PLoS One
, vol.5
-
-
Maricic, T.1
Whitten, M.2
Paabo, S.3
-
23
-
-
84899683899
-
Hybridization capture reveals evolution and conservation across the entire koala retrovirus genome
-
Tsangaras K, Siracusa MC, Nikolaidis N, Ishida Y, Cui P, Vielgrader H, Helgen KM, Roca AL, Greenwood AD. 2014. Hybridization capture reveals evolution and conservation across the entire koala retrovirus genome. PLoS One 9:e95633. http://dx.doi.org/10.1371/journal .pone.0095633.
-
(2014)
PLoS One
, vol.9
-
-
Tsangaras, K.1
Siracusa, M.C.2
Nikolaidis, N.3
Ishida, Y.4
Cui, P.5
Vielgrader, H.6
Helgen, K.M.7
Roca, A.L.8
Greenwood, A.D.9
-
24
-
-
77956285690
-
Illumina sequencing library preparation for highly multiplexed target capture and sequencing
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
Meyer M, Kircher M. 2010. Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protoc pdb.prot5448. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(2010)
Cold Spring Harbor Protoc pdb.prot5448
-
-
Meyer, M.1
Kircher, M.2
-
25
-
-
84929179984
-
Variation in koala microbiomes within and between individuals: effect of body region and captivity status
-
Alfano N, Courtiol A, Vielgrader H, Timms P, Roca AL, Greenwood AD. 2015. Variation in koala microbiomes within and between individuals: effect of body region and captivity status. Sci Rep 5:10189. http://dx.doi.org/10.1038/srep10189.
-
(2015)
Sci Rep
, vol.5
, pp. 10189
-
-
Alfano, N.1
Courtiol, A.2
Vielgrader, H.3
Timms, P.4
Roca, A.L.5
Greenwood, A.D.6
-
26
-
-
74549125386
-
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M, Guindon S, Gascuel O. 2010. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27:221-224. http://dx.doi.org/10.1093/molbev/msp259.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
27
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
28
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174. http://dx.doi.org/10.1007/BF02101694.
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
29
-
-
80255127234
-
Cutadapt removes adapter sequences from highthroughput sequencing reads
-
Martin M. 2012. Cutadapt removes adapter sequences from highthroughput sequencing reads. Bioinformatics Action 17:10-12.
-
(2012)
Bioinformatics Action
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
30
-
-
84905049901
-
Trimmomatic: a flexible trimmer for Illumina sequence data
-
Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120. http://dx.doi.org/10.1093/bioinformatics/btu170.
-
(2014)
Bioinformatics
, vol.30
, pp. 2114-2120
-
-
Bolger, A.M.1
Lohse, M.2
Usadel, B.3
-
31
-
-
84925373900
-
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
-
Li H. 2013. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM. arXiv 1303:3997.
-
(2013)
arXiv
, vol.1303
, pp. 3997
-
-
Li, H.1
-
32
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079. http://dx.doi.org/10.1093/bioinformatics/btp352.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
33
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo MA, Banks E, Poplin R, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ. 2011. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43:491-498. http://dx.doi.org/10.1038/ng.806.
-
(2011)
Nat Genet
, vol.43
, pp. 491-498
-
-
DePristo, M.A.1
Banks, E.2
Poplin, R.3
Garimella, K.V.4
Maguire, J.R.5
Hartl, C.6
Philippakis, A.A.7
Del Angel, G.8
Rivas, M.A.9
Hanna, M.10
McKenna, A.11
Fennell, T.J.12
Kernytsky, A.M.13
Sivachenko, A.Y.14
Cibulskis, K.15
Gabriel, S.B.16
Altshuler, D.17
Daly, M.J.18
-
34
-
-
80054913451
-
FLASH: fast length adjustment of short reads to improve genome assemblies
-
Magoc T, Salzberg SL. 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27:2957-2963. http://dx.doi.org/10.1093/bioinformatics/btr507.
-
(2011)
Bioinformatics
, vol.27
, pp. 2957-2963
-
-
Magoc, T.1
Salzberg, S.L.2
-
35
-
-
0021739591
-
A Mus dunni cell line that lacks sequences closely related to endogenous murine leukemia viruses and can be infected by ectropic, amphotropic, xenotropic, and mink cell focusforming viruses
-
Lander MR, Chattopadhyay SK. 1984. A Mus dunni cell line that lacks sequences closely related to endogenous murine leukemia viruses and can be infected by ectropic, amphotropic, xenotropic, and mink cell focusforming viruses. J Virol 52:695-698.
-
(1984)
J Virol
, vol.52
, pp. 695-698
-
-
Lander, M.R.1
Chattopadhyay, S.K.2
-
36
-
-
84879977879
-
An exogenous retrovirus isolated from koalas with malignant neoplasias in a US zoo
-
Xu W, Stadler CK, Gorman K, Jensen N, Kim D, Zheng H, Tang S, Switzer WM, Pye GW, Eiden MV. 2013. An exogenous retrovirus isolated from koalas with malignant neoplasias in a US zoo. Proc Natl Acad Sci U S A 110:11547-11552. http://dx.doi.org/10.1073/pnas.1304704110.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 11547-11552
-
-
Xu, W.1
Stadler, C.K.2
Gorman, K.3
Jensen, N.4
Kim, D.5
Zheng, H.6
Tang, S.7
Switzer, W.M.8
Pye, G.W.9
Eiden, M.V.10
-
37
-
-
77954129578
-
Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids
-
Bryksin AV, Matsumura I. 2010. Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids. Biotechniques 48: 463-465. http://dx.doi.org/10.2144/000113418.
-
(2010)
Biotechniques
, vol.48
, pp. 463-465
-
-
Bryksin, A.V.1
Matsumura, I.2
-
38
-
-
77954272855
-
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
-
Abascal F, Zardoya R, Telford MJ. 2010. TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res 38:W7-W13. http://dx.doi.org/10.1093/nar/gkq291.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W7-W13
-
-
Abascal, F.1
Zardoya, R.2
Telford, M.J.3
-
39
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772-780. http://dx.doi.org/10.1093/molbev/mst010.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
40
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave C, Preparata G, Saccone C, Serio G. 1984. A new method for calculating evolutionary substitution rates. J Mol Evol 20:86-93. http://dx.doi.org/10.1007/BF02101990.
-
(1984)
J Mol Evol
, vol.20
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
41
-
-
0036017382
-
rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny
-
Dimmic MW, Rest JS, Mindell DP, Goldstein RA. 2002. rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. J Mol Evol 55:65-73. http://dx.doi.org/10.1007/s00239-001-2304-y.
-
(2002)
J Mol Evol
, vol.55
, pp. 65-73
-
-
Dimmic, M.W.1
Rest, J.S.2
Mindell, D.P.3
Goldstein, R.A.4
-
42
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods
-
Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39:306-314. http://dx.doi.org/10.1007/BF00160154.
-
(1994)
J Mol Evol
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
43
-
-
84899553363
-
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
-
Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30:1312-1313. http://dx.doi.org/10.1093/bioinformatics/btu033.
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
44
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML web servers
-
Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst Biol 57:758-771. http://dx.doi.org/10.1080/10635150802429642.
-
(2008)
Syst Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
45
-
-
77950820827
-
How many bootstrap replicates are necessary?
-
Pattengale ND, Alipour M, Bininda-Emonds OR, Moret BM, Stamatakis A. 2010. How many bootstrap replicates are necessary?. J Comput Biol 17:337-354. http://dx.doi.org/10.1089/cmb.2009.0179.
-
(2010)
J Comput Biol
, vol.17
, pp. 337-354
-
-
Pattengale, N.D.1
Alipour, M.2
Bininda-Emonds, O.R.3
Moret, B.M.4
Stamatakis, A.5
-
46
-
-
33646167864
-
A simple and robust statistical test for detecting the presence of recombination
-
Bruen TC, Philippe H, Bryant D. 2006. A simple and robust statistical test for detecting the presence of recombination. Genetics 172:2665-2681.
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.C.1
Philippe, H.2
Bryant, D.3
-
47
-
-
84864605220
-
Detecting individual sites subject to episodic diversifying selection
-
Murrell B, Wertheim JO, Moola S, Weighill T, Scheffler K, Kosakovsky Pond SL. 2012. Detecting individual sites subject to episodic diversifying selection. PLoS Genet 8:e1002764. http://dx.doi.org/10.1371/journal.pgen.1002764.
-
(2012)
PLoS Genet
, vol.8
-
-
Murrell, B.1
Wertheim, J.O.2
Moola, S.3
Weighill, T.4
Scheffler, K.5
Kosakovsky Pond, S.L.6
-
48
-
-
84876522258
-
FUBAR: a fast, unconstrained bayesian approximation for inferring selection
-
Murrell B, Moola S, Mabona A, Weighill T, Sheward D, Kosakovsky Pond SL, Scheffler K. 2013. FUBAR: a fast, unconstrained bayesian approximation for inferring selection. Mol Biol Evol 30:1196-1205. http://dx.doi.org/10.1093/molbev/mst030.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1196-1205
-
-
Murrell, B.1
Moola, S.2
Mabona, A.3
Weighill, T.4
Sheward, D.5
Kosakovsky Pond, S.L.6
Scheffler, K.7
-
49
-
-
80155187383
-
A random effects branch-site model for detecting episodic diversifying selection
-
Kosakovsky Pond SL, Murrell B, Fourment M, Frost SD, Delport W, Scheffler K. 2011. A random effects branch-site model for detecting episodic diversifying selection. Mol Biol Evol 28:3033-3043. http://dx.doi.org/10.1093/molbev/msr125.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 3033-3043
-
-
Kosakovsky Pond, S.L.1
Murrell, B.2
Fourment, M.3
Frost, S.D.4
Delport, W.5
Scheffler, K.6
-
50
-
-
84855295457
-
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
-
Kircher M, Sawyer S, Meyer M. 2012. Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Res 40:e3. http://dx.doi.org/10.1093/nar/gkr771.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. e3
-
-
Kircher, M.1
Sawyer, S.2
Meyer, M.3
-
51
-
-
0021164586
-
Nucleotide sequence of the large terminal repeat of two different strains of gibbon ape leukemia virus
-
Trainor CD, Scott ML, Josephs SF, Fry KE, Reitz MS, Jr. 1984. Nucleotide sequence of the large terminal repeat of two different strains of gibbon ape leukemia virus. Virology 137:201-205. http://dx.doi.org/10.1016/0042-6822(84)90025-4.
-
(1984)
Virology
, vol.137
, pp. 201-205
-
-
Trainor, C.D.1
Scott, M.L.2
Josephs, S.F.3
Fry, K.E.4
Reitz, M.S.5
-
52
-
-
0020697962
-
Molecular cloning of viral DNA from leukemogenic Gross passage A murine leukemia virus and nucleotide sequence of its long terminal repeat
-
Villemur R, Rassart E, DesGroseillers L, Jolicoeur P. 1983. Molecular cloning of viral DNA from leukemogenic Gross passage A murine leukemia virus and nucleotide sequence of its long terminal repeat. J Virol 45:539-546.
-
(1983)
J Virol
, vol.45
, pp. 539-546
-
-
Villemur, R.1
Rassart, E.2
DesGroseillers, L.3
Jolicoeur, P.4
-
53
-
-
0030842622
-
Localization of the labile disulfide bond between SU and TM of the murine leukemia virus envelope protein complex to a highly conserved CWLC motif in SU that resembles the active-site sequence of thiol-disulfide exchange enzymes
-
Pinter A, Kopelman R, Li Z, Kayman SC, Sanders DA. 1997. Localization of the labile disulfide bond between SU and TM of the murine leukemia virus envelope protein complex to a highly conserved CWLC motif in SU that resembles the active-site sequence of thiol-disulfide exchange enzymes. J Virol 71:8073-8077.
-
(1997)
J Virol
, vol.71
, pp. 8073-8077
-
-
Pinter, A.1
Kopelman, R.2
Li, Z.3
Kayman, S.C.4
Sanders, D.A.5
-
54
-
-
84912571367
-
Sequence variation of koala retrovirus transmembrane protein p15E among koalas from different geographic regions
-
Ishida Y, McCallister C, Nikolaidis N, Tsangaras K, Helgen KM, Greenwood AD, Roca AL. 2015. Sequence variation of koala retrovirus transmembrane protein p15E among koalas from different geographic regions. Virology 475:28-36. http://dx.doi.org/10.1016/j.virol.2014.10.036.
-
(2015)
Virology
, vol.475
, pp. 28-36
-
-
Ishida, Y.1
McCallister, C.2
Nikolaidis, N.3
Tsangaras, K.4
Helgen, K.M.5
Greenwood, A.D.6
Roca, A.L.7
-
55
-
-
36849053276
-
Changes in viral protein function that accompany retroviral endogenization
-
Oliveira NM, Satija H, Kouwenhoven IA, Eiden MV. 2007. Changes in viral protein function that accompany retroviral endogenization. Proc Natl Acad Sci U S A 104:17506-17511. http://dx.doi.org/10.1073/pnas.0704313104.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 17506-17511
-
-
Oliveira, N.M.1
Satija, H.2
Kouwenhoven, I.A.3
Eiden, M.V.4
-
56
-
-
9744221135
-
Retrovirus budding
-
Demirov DG, Freed EO. 2004. Retrovirus budding. Virus Res 106:87-102. http://dx.doi.org/10.1016/j.virusres.2004.08.007.
-
(2004)
Virus Res
, vol.106
, pp. 87-102
-
-
Demirov, D.G.1
Freed, E.O.2
-
57
-
-
84876338753
-
Construction and characterization of an infectious molecular clone of koala retrovirus
-
Shojima T, Hoshino S, Abe M, Yasuda J, Shogen H, Kobayashi T, Miyazawa T. 2013. Construction and characterization of an infectious molecular clone of koala retrovirus. J Virol 87:5081-5088. http://dx.doi.org/10.1128/JVI.01584-12.
-
(2013)
J Virol
, vol.87
, pp. 5081-5088
-
-
Shojima, T.1
Hoshino, S.2
Abe, M.3
Yasuda, J.4
Shogen, H.5
Kobayashi, T.6
Miyazawa, T.7
-
58
-
-
43749097090
-
Critical role of conserved hydrophobic residues within the major homology region in mature retroviral capsid assembly
-
Purdy JG, Flanagan JM, Ropson IJ, Rennoll-Bankert KE, Craven RC. 2008. Critical role of conserved hydrophobic residues within the major homology region in mature retroviral capsid assembly. J Virol 82:5951-5961. http://dx.doi.org/10.1128/JVI.00214-08.
-
(2008)
J Virol
, vol.82
, pp. 5951-5961
-
-
Purdy, J.G.1
Flanagan, J.M.2
Ropson, I.J.3
Rennoll-Bankert, K.E.4
Craven, R.C.5
-
59
-
-
33644768070
-
In vitro characterization of a koala retrovirus
-
Oliveira NM, Farrell KB, Eiden MV. 2006. In vitro characterization of a koala retrovirus. J Virol 80:3104-3107. http://dx.doi.org/10.1128/JVI.80.6.3104-3107.2006.
-
(2006)
J Virol
, vol.80
, pp. 3104-3107
-
-
Oliveira, N.M.1
Farrell, K.B.2
Eiden, M.V.3
-
60
-
-
0025834275
-
Construction and properties of retrovirus packaging cells based on gibbon ape leukemia virus
-
Miller AD, Garcia JV, von Suhr N, Lynch CM, Wilson C, Eiden MV. 1991. Construction and properties of retrovirus packaging cells based on gibbon ape leukemia virus. J Virol 65:2220-2224.
-
(1991)
J Virol
, vol.65
, pp. 2220-2224
-
-
Miller, A.D.1
Garcia, J.V.2
von Suhr, N.3
Lynch, C.M.4
Wilson, C.5
Eiden, M.V.6
-
61
-
-
0033692809
-
Viral fusogenic membrane glycoprotein expression causes syncytium formation with bioenergetic cell death: implications for gene therapy
-
Higuchi H, Bronk SF, Bateman A, Harrington K, Vile RG, Gores GJ. 2000. Viral fusogenic membrane glycoprotein expression causes syncytium formation with bioenergetic cell death: implications for gene therapy. Cancer Res 60:6396-6402.
-
(2000)
Cancer Res
, vol.60
, pp. 6396-6402
-
-
Higuchi, H.1
Bronk, S.F.2
Bateman, A.3
Harrington, K.4
Vile, R.G.5
Gores, G.J.6
-
62
-
-
84902381856
-
Gene therapy of lung adenocarcinoma using herpes virus expressing a fusogenic membrane glycoprotein
-
Zhu B, Yang JR, Jiang YQ, Chen SF, Fu XP. 2014. Gene therapy of lung adenocarcinoma using herpes virus expressing a fusogenic membrane glycoprotein. Cell Biochem Biophys 69:583-587. http://dx.doi.org/10.1007/s12013-014-9836-4.
-
(2014)
Cell Biochem Biophys
, vol.69
, pp. 583-587
-
-
Zhu, B.1
Yang, J.R.2
Jiang, Y.Q.3
Chen, S.F.4
Fu, X.P.5
-
63
-
-
80053540892
-
Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
-
Mason VC, Li G, Helgen KM, Murphy WJ. 2011. Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens. Genome Res 21:1695-1704. http://dx.doi.org/10.1101/gr.120196.111.
-
(2011)
Genome Res
, vol.21
, pp. 1695-1704
-
-
Mason, V.C.1
Li, G.2
Helgen, K.M.3
Murphy, W.J.4
-
64
-
-
84899568858
-
Ancient whole genome enrichment using baits built from modern DNA
-
Enk JM, Devault AM, Kuch M, Murgha YE, Rouillard JM, Poinar HN. 2014. Ancient whole genome enrichment using baits built from modern DNA. Mol Biol Evol 31:1292-1294. http://dx.doi.org/10.1093/molbev/msu074.
-
(2014)
Mol Biol Evol
, vol.31
, pp. 1292-1294
-
-
Enk, J.M.1
Devault, A.M.2
Kuch, M.3
Murgha, Y.E.4
Rouillard, J.M.5
Poinar, H.N.6
-
65
-
-
0022749433
-
Gibbon ape leukaemia virus RNA in leukaemic T-lymphoid cell lines: expression of a novel RNA transcript
-
Eiden M, Trainor CD, Reitz MS. 1986. Gibbon ape leukaemia virus RNA in leukaemic T-lymphoid cell lines: expression of a novel RNA transcript. J Gen Virol 67(Pt 7):1455-1460.
-
(1986)
J Gen Virol
, vol.67
, Issue.7
, pp. 1455-1460
-
-
Eiden, M.1
Trainor, C.D.2
Reitz, M.S.3
-
66
-
-
1842291717
-
A viral long terminal repeat in the interleukin 2 gene of a cell line that constitutively produces interleukin 2
-
Chen SJ, Holbrook NJ, Mitchell KF, Vallone CA, Greengard JS, Crabtree GR, Lin Y. 1985. A viral long terminal repeat in the interleukin 2 gene of a cell line that constitutively produces interleukin 2. Proc Natl Acad SciUSA 82:7284-7288. http://dx.doi.org/10.1073/pnas.82.21.7284.
-
(1985)
Proc Natl Acad SciUSA
, vol.82
, pp. 7284-7288
-
-
Chen, S.J.1
Holbrook, N.J.2
Mitchell, K.F.3
Vallone, C.A.4
Greengard, J.S.5
Crabtree, G.R.6
Lin, Y.7
-
67
-
-
84883287180
-
Identification of a novel subgroup of koala retrovirus from koalas in Japanese zoos
-
Shojima T, Yoshikawa R, Hoshino S, Shimode S, Nakagawa S, Ohata T, Nakaoka R, Miyazawa T. 2013. Identification of a novel subgroup of koala retrovirus from koalas in Japanese zoos. J Virol 87:9943-9948. http://dx.doi.org/10.1128/JVI.01385-13.
-
(2013)
J Virol
, vol.87
, pp. 9943-9948
-
-
Shojima, T.1
Yoshikawa, R.2
Hoshino, S.3
Shimode, S.4
Nakagawa, S.5
Ohata, T.6
Nakaoka, R.7
Miyazawa, T.8
-
68
-
-
84879324277
-
One hundred twenty years of koala retrovirus evolution determined from museum skins
-
Avila-Arcos MC, Ho SY, Ishida Y, Nikolaidis N, Tsangaras K, Honig K, Medina R, Rasmussen M, Fordyce SL, Calvignac-Spencer S, Willerslev E, Gilbert MT, Helgen KM, Roca AL, Greenwood AD. 2013. One hundred twenty years of koala retrovirus evolution determined from museum skins. Mol Biol Evol 30:299-304. http://dx.doi.org/10.1093/molbev/mss223.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 299-304
-
-
Avila-Arcos, M.C.1
Ho, S.Y.2
Ishida, Y.3
Nikolaidis, N.4
Tsangaras, K.5
Honig, K.6
Medina, R.7
Rasmussen, M.8
Fordyce, S.L.9
Calvignac-Spencer, S.10
Willerslev, E.11
Gilbert, M.T.12
Helgen, K.M.13
Roca, A.L.14
Greenwood, A.D.15
-
69
-
-
84865124450
-
Identification of diverse groups of endogenous gammaretroviruses in mega-and microbats
-
Cui J, Tachedjian G, Tachedjian M, Holmes EC, Zhang S, Wang LF. 2012. Identification of diverse groups of endogenous gammaretroviruses in mega-and microbats. J Gen Virol 93:2037-2045. http://dx.doi.org/10.1099/vir.0.043760-0.
-
(2012)
J Gen Virol
, vol.93
, pp. 2037-2045
-
-
Cui, J.1
Tachedjian, G.2
Tachedjian, M.3
Holmes, E.C.4
Zhang, S.5
Wang, L.F.6
|