Decomposition of DNA Nucleobases by Laser Irradiation of Gold Nanoparticles Monitored by Surface-Enhanced Raman Scattering

Journal of Physical Chemistry C

Volumn 120, Issue 5, 2016, Pages 3001-3009

  Schürmann, Robin ^a,b   Bald, Ilko ^a,b  

^a UNIVERSITY OF POTSDAM   (Germany)

^b BAM FEDERAL INSTITUTE FOR MATERIALS RESEARCH AND TESTING   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ABSORPTION SPECTROSCOPY; AROMATIC COMPOUNDS; DISEASES; DNA; ELECTRONS; FIBER OPTIC SENSORS; GOLD; HIGH ENERGY LASERS; ION BEAMS; IRRADIATION; METAL NANOPARTICLES; NANOPARTICLES; PHOTODISSOCIATION; PLASMONS; PULSED LASERS; RADIOTHERAPY; RAMAN SCATTERING; RAMAN SPECTROSCOPY; SURFACE PLASMON RESONANCE; ULTRAFAST LASERS; ULTRAVIOLET SPECTROSCOPY;

AROMATIC RING SYSTEM; DISSOCIATIVE ELECTRON ATTACHMENT; INTERMEDIATE FORMATION; LOW ENERGY ELECTRONS; NANOSECOND PULSED LASER; PARTIAL TRANSFORMATION; SURFACE ENHANCED RAMAN SCATTERING (SERS); UV-VIS ABSORPTION SPECTROSCOPY;

SURFACE SCATTERING;

EID: 84958039713     PISSN: 19327447     EISSN: 19327455     Source Type: Journal    
DOI: 10.1021/acs.jpcc.5b10564     Document Type: Article

References (47)

1. Garwe, F.; Bauerschäfer, U.; Csáki, A.; Steinbrück, A.; Ritter, K.; Bochmann, A.; Bergmann, J.; Weise, A.; Akimov, D.; Maubach, G. et al. Optically Controlled Thermal Management on the Nanometer Length Scale Nanotechnology 2008, 19 (5) 55207 10.1088/0957-4484/19/05/055207
2. Yamada, K.; Miyajima, K.; Mafune, F. Thermionic Emission of Electrons from Gold Nanoparticles by Nanosecond Pulse-Laser Excitation of Interband J. Phys. Chem. C 2007, 111 (30) 11246-11251 10.1021/jp0730747
3. Mukherjee, S.; Libisch, F.; Large, N.; Neumann, O.; Brown, L. V.; Cheng, J.; Lassiter, J. B.; Carter, E. A.; Nordlander, P.; Halas, N. J. Hot Electrons Do the Impossible: Plasmon-Induced Dissociation of H 2 on Au Nano Lett. 2013, 13 (1) 240-247 10.1021/nl303940z
4. Xie, W.; Schlücker, S. Hot Electron-Induced Reduction of Small Molecules on Photorecycling Metal Surfaces Nat. Commun. 2015, 6, 7570 10.1038/ncomms8570
5. Takeda, Y.; Kondow, T.; Mafuné, F. Selective Decomposition of Nucleic Acids by Laser Irradiation on Probe-Tethered Gold Nanoparticles in Solution Phys. Chem. Chem. Phys. 2011, 13 (2) 586-592 10.1039/C0CP00770F
6. Takeda, Y.; Mafuné, F.; Kondow, T. Selective Degradation of Proteins by Laser Irradiation onto Gold Nanoparticles in Solution J. Phys. Chem. C 2009, 113 (13) 5027-5030 10.1021/jp809438d
7. Csaki, A.; Garwe, F.; Steinbrück, A.; Maubach, G.; Festag, G.; Weise, A.; Riemann, I.; König, K.; Fritzsche, W. A Parallel Approach for Subwavelength Molecular Surgery Using Gene-Specific Positioned Metal Nanoparticles as Laser Light Antennas Nano Lett. 2007, 7 (2) 247-253 10.1021/nl061966x
8. Wirth, J.; Garwe, F.; Hähnel, G.; Csáki, A.; Jahr, N.; Stranik, O.; Paa, W.; Fritzsche, W. Plasmonic Nanofabrication by Long-Range Excitation Transfer via DNA Nanowire Nano Lett. 2011, 11 (4) 1505-1511 10.1021/nl104269x
9. Hashimoto, S.; Werner, D.; Uwada, T. Studies on the Interaction of Pulsed Lasers with Plasmonic Gold Nanoparticles Toward Light Manipulation, Heat Management, and Nanofabrication J. Photochem. Photobiol., C 2012, 13 (1) 28-54 10.1016/j.jphotochemrev.2012.01.001
10. Lal, S.; Clare, S. E.; Halas, N. J. Nanoshell-Enabled Photothermal Cancer Therapy: Impending Clinical Impact Acc. Chem. Res. 2008, 41 (12) 1842-1851 10.1021/ar800150g
11. Huang, X.; Jain, P.; El-Sayed, I.; El-Sayed, M. Plasmonic Photothermal Therapy (PPTT) Using Gold Nanoparticles Lasers Med. Sci. 2008, 23 (3) 217-228 10.1007/s10103-007-0470-x
12. Shoji, M.; Miyajima, K.; Mafune, F. Ionization of Gold Nanoparticles in Solution by Pulse Laser Excitation as Studied by Mass Spectrometric Detection of Gold Cluster Ions J. Phys. Chem. C 2008, 112 (6) 1929-1932 10.1021/jp077503c
13. Zhang, Y.; Pluchery, O.; Caillard, L.; Lamic-Humblot, A.-F.; Casale, S.; Chabal, Y. J.; Salmeron, M. Sensing the Charge State of Single Gold Nanoparticles via Work Function Measurements Nano Lett. 2015, 15 (1) 51-55 10.1021/nl503782s
14. Lu, Q.-B. Effects and Applications of Ultrashort-Lived Prehydrated Electrons in Radiation Biology and Radiotherapy of Cancer Mutat. Res., Rev. Mutat. Res. 2010, 704 (1-3) 190-199 10.1016/j.mrrev.2010.01.012
15. Siefermann, K. R.; Abel, B. The Hydrated Electron: A Seemingly Familiar Chemical and Biological Transient Angew. Chem., Int. Ed. 2011, 50 (23) 5264-5272 10.1002/anie.201006521
16. Bald, I.; Langer, J.; Tegeder, P.; Ingólfsson, O. From Isolated Molecules Through Clusters and Condensates to the Building Blocks of Life Int. J. Mass Spectrom. 2008, 277 (1-3) 4-25 10.1016/j.ijms.2008.06.013
17. Thorman, R. M.; Kumar, T. P.; Ragesh; Fairbrother, D. H.; Ingólfsson, O. The Role of Low-Energy Electrons in Focused Electron Beam Induced Deposition: Four Case Studies of Representative Precursors Beilstein J. Nanotechnol. 2015, 6, 1904-1926 10.3762/bjnano.6.194
18. Baccarelli, I.; Bald, I.; Gianturco, F. A.; Illenberger, E.; Kopyra, J. Electron-Induced Damage of DNA and its Components: Experiments and theoretical models Phys. Rep. 2011, 508 (1-2) 1-44 10.1016/j.physrep.2011.06.004
19. Bald, I.; Dabkowska, I.; Illenberger, E. Probing Biomolecules by Laser-Induced Acoustic Desorption: Electrons at Near Zero Electron Volts Trigger Sugar-Phosphate Cleavage Angew. Chem., Int. Ed. 2008, 47 (44) 8518-8520 10.1002/anie.200803382
20. McMahon, S. J.; Hyland, W. B.; Muir, M. F.; Coulter, J. A.; Jain, S.; Butterworth, K. T.; Schettino, G.; Dickson, G. R.; Hounsell, A. R.; O'Sullivan, J. M. Biological Consequences of Nanoscale Energy Deposition Near Irradiated Heavy Atom Nanoparticles Sci. Rep. 2011, 1, 18 10.1038/srep00018
21. Verkhovtsev, A. V.; Korol, A. V.; Solov'yov, A. V. Revealing the Mechanism of the Low-Energy Electron Yield Enhancement from Sensitizing Nanoparticles Phys. Rev. Lett. 2015, 114 (6) 063401 10.1103/PhysRevLett.114.063401
22. Jain, S.; Hirst, D. G.; O'Sullivan, J. M. Gold Nanoparticles as Novel Agents for Cancer Therapy Br. J. Radiol. 2012, 85 (1010) 101-113 10.1259/bjr/59448833
23. Jeremic, B.; Aguerri, A. R.; Filipovic, N. Radiosensitization by Gold Nanoparticles Clin. Transl. Oncol. 2013, 15 (8) 593-601 10.1007/s12094-013-1003-7
24. Keller, A.; Bald, I.; Rotaru, A.; Cauet, E.; Gothelf, K. V.; Besenbacher, F. Probing Electron-Induced Bond Cleavage at the Single-Molecule Level Using DNA Origami Templates ACS Nano 2012, 6 (5) 4392-4399 10.1021/nn3010747
25. Keller, A.; Kopyra, J.; Gothelf, K. V.; Bald, I. Electron-Induced Damage of Biotin Studied in the Gas Phase and in the Condensed Phase at a Single-Molecule Level New J. Phys. 2013, 15, 083045 10.1088/1367-2630/15/8/083045
26. Keller, A.; Rackwitz, J.; Cauet, E.; Lievin, J.; Körzdörfer, T.; Rotaru, A.; Gothelf, K. V.; Besenbacher, F.; Bald, I. Sequence Dependence of Electron-Induced DNA Strand Breakage Revealed by DNA Nanoarrays Sci. Rep. 2014, 4, 7391 10.1038/srep07391
27. Alizadeh, E.; Sanz, A. G.; García, G.; Sanche, L. Radiation Damage to DNA: The Indirect Effect of Low-Energy Electrons J. Phys. Chem. Lett. 2013, 4 (5) 820-825 10.1021/jz4000998
28. McAllister, M.; Smyth, M.; Gu, B.; Tribello, G. A.; Kohanoff, J. Understanding the Interaction between Low-Energy Electrons and DNA Nucleotides in Aqueous Solution J. Phys. Chem. Lett. 2015, 6 (15) 3091-3097 10.1021/acs.jpclett.5b01011
29. Kneipp, J.; Kneipp, H.; Kneipp, K. SERS-a Single-Molecule and Nanoscale Tool for Bioanalytics Chem. Soc. Rev. 2008, 37 (5) 1052 10.1039/b708459p
30. Prinz, J.; Schreiber, B.; Olejko, L.; Oertel, J.; Rackwitz, J.; Keller, A.; Bald, I. DNA Origami Substrates for Highly Sensitive Surface-Enhanced Raman Scattering J. Phys. Chem. Lett. 2013, 4 (23) 4140-4145 10.1021/jz402076b
31. Liu, X.; Atwater, M.; Wang, J.; Huo, Q. Extinction Coefficient of Gold Nanoparticles with Different Sizes and Different Capping Ligands Colloids Surf., B 2007, 58 (1) 3-7 10.1016/j.colsurfb.2006.08.005
32. Huels, M. A.; Hahndorf, I.; Illenberger, E.; Sanche, L. Resonant Dissociation of DNA Bases by Subionization Electrons J. Chem. Phys. 1998, 108 (4) 1309 10.1063/1.475503
33. Hanel, G.; Gstir, B.; Denifl, S.; Scheier, P.; Probst, M.; Farizon, B.; Farizon, M.; Illenberger, E.; Märk, T. D. Electron Attachment to Uracil: Effective Destruction at Subexcitation Energies Phys. Rev. Lett. 2003, 90 (18) 188104 10.1103/PhysRevLett.90.188104
34. Ptasińska, S.; Denifl, S.; Mróz, B.; Probst, M.; Grill, V.; Illenberger, E.; Scheier, P.; Märk, T. D. Bond Selective Dissociative Electron Attachment to Thymine J. Chem. Phys. 2005, 123 (12) 124302 10.1063/1.2035592
35. Kopyra, J.; Koenig-Lehmann, C.; Bald, I.; Illenberger, E. A Single Slow Electron Triggers the Loss of Both Chlorine Atoms from the Anticancer Drug Cisplatin: Implications for Chemoradiation Therapy Angew. Chem., Int. Ed. 2009, 48 (42) 7904-7907 10.1002/anie.200903874
36. da Silva, F. F.; Matias, C.; Almeida, D.; García, G.; Ingólfsson, O.; Flosadóttir, H. D.; Ómarsson, B.; Ptasinska, S.; Puschnigg, B.; Scheier, P. et al. NCO-, a Key Fragment Upon Dissociative Electron Attachment and Electron Transfer to Pyrimidine Bases: Site Selectivity for a Slow Decay Process J. Am. Soc. Mass Spectrom. 2013, 24 (11) 1787-1797 10.1007/s13361-013-0715-9
37. 2 Phys. Chem. Chem. Phys. 2007, 9 (23) 2983 10.1039/b702482g
38. Papp, P.; Urban, J.; Matejčík, Š.; Stano, M.; Ingolfsson, O. Dissociative Electron Attachment to Gas Phase Valine: A Combined Experimental and Theoretical Study J. Chem. Phys. 2006, 125 (20) 204301 10.1063/1.2400236
39. Wang, X.-B.; Kowalski, K.; Wang, L.-S.; Xantheas, S. S. Stepwise Hydration of the Cyanide Anion: A Temperature-Controlled Photoelectron Spectroscopy and Ab Initio Computational Study of CN[sup-](H[sub 2]O)[sub n], n = 2-5 J. Chem. Phys. 2010, 132 (12) 124306 10.1063/1.3360306
40. Grua, P.; Morreeuw, J.; Bercegol, H. Kinetic Study of Laser Damage Initiation by Creation of an Electron Plasma from Absorbing Nano-Inclusions Proc. SPIE 2002, No. 4679) 293-302
41. Bowmaker, G. A.; Kennedy, B. J.; Reid, J. C. Crystal Structures of AuCN and AgCN and Vibrational Spectroscopic Studies of AuCN, AgCN, and CuCN † Inorg. Chem. 1998, 37 (16) 3968-3974 10.1021/ic9714697
42. Abdoul-Carime, H.; Huels, M. A.; Brüning, F.; Illenberger, E.; Sanche, L. Dissociative Electron Attachment to Gas-Phase 5-Bromouracil J. Chem. Phys. 2000, 113 (7) 2517 10.1063/1.1306654
43. Rastogi, V. K.; Palafox, M. A.; Mittal, L.; Peica, N.; Kiefer, W.; Lang, K.; Ojha, S. P. FTIR and FT-Raman Spectra and Density Functional Computations of the Vibrational Spectra, Molecular Geometry and Atomic Charges of the Biomolecule: 5-Bromouracil J. Raman Spectrosc. 2007, 38 (10) 1227-1241 10.1002/jrs.1725
44. Giese, B.; McNaughton, D. Surface-Enhanced Raman Spectroscopic Study of Uracil. The Influence of the Surface Substrate, Surface Potential, and pH J. Phys. Chem. B 2002, 106 (6) 1461-1470 10.1021/jp011986h
45. Garrell, R. L.; Shaw, K. D.; Krimm, S. Surface Enhanced Raman Spectroscopy of Halide Ions on Colloidal Silver: Morphology and Coverage Dependence Surf. Sci. 1983, 124 (2-3) 613-624 10.1016/0039-6028(83)90815-4
46. Zhang, L.; Li, Q.; Tao, W.; Yu, B.; Du, Y. Quantitative Analysis of Thymine with Surface-Enhanced Raman Spectroscopy and Partial Least Squares (PLS) Regression Anal. Bioanal. Chem. 2010, 398 (4) 1827-1832 10.1007/s00216-010-4074-0
47. Lee, P. C.; Meisel, D. Adsorption and Surface-Enhanced Raman of Dyes on Silver and Gold Sols J. Phys. Chem. 1982, 86 (17) 3391-3395 10.1021/j100214a025