DNA origami substrates for highly sensitive surface-enhanced Raman scattering

Journal of Physical Chemistry Letters

Volumn 4, Issue 23, 2013, Pages 4140-4145

  Prinz, Julia ^a   Schreiber, Benjamin ^b,c   Olejko, Lydia ^a   Oertel, Jana ^b   Rackwitz, Jenny ^a   Keller, Adrian ^b   Bald, Ilko ^a,d  

^a UNIVERSITY OF POTSDAM   (Germany)

^b INSTITUTE OF ION BEAM PHYSICS AND MATERIALS RESEARCH   (Germany)

^c DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

^d BAM FEDERAL INSTITUTE FOR MATERIALS RESEARCH AND TESTING   (Germany)

Author keywords

DNA origami; nanoparticles; Raman spectroscopy; self assembly

Indexed keywords

DNA NANOTECHNOLOGY; DNA ORIGAMIS; OPTICAL SPECTROSCOPY; PLASMONIC COUPLING; PLASMONIC NANOSTRUCTURES; PRECISE POSITIONING; SINGLE MOLECULE MEASUREMENTS; SURFACE ENHANCED RAMAN SCATTERING (SERS);

DNA; GOLD; MOLECULES; NANOPARTICLES; PLASMONS; RAMAN SCATTERING; RAMAN SPECTROSCOPY; SELF ASSEMBLY; SURFACE SCATTERING;

SUBSTRATES;

EID: 84890371522     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/jz402076b     Document Type: Article

References (27)

1. Willets, K. A.; Van Duyne, R. P. Localized Surface Plasmon Resonance Spectroscopy and Sensing Annu. Rev. Phys. Chem. 2007, 58, 267-297
2. Kneipp, K.; Wang, Y.; Kneipp, H.; Perelman, L. T.; Itzkan, I.; Dasari, R.; Feld, M. S. Single Molecule Detection Using Surface-Enhanced Raman Scattering (SERS) Phys. Rev. Lett. 1997, 78, 1667-1670
3. Kneipp, J.; Kneipp, H.; Kneipp, K. SERS-A Single-Molecule and Nanoscale Tool for Bioanalytics Chem. Soc. Rev. 2008, 37, 1052-1060
4. Le Ru, E. C.; Etchegoin, P. G. Single-Molecule Surface-Enhanced Raman Spectroscopy Annu. Rev. Phys. Chem. 2012, 63, 65-87
5. Lee, H. M.; Jin, S. M.; Kim, H. M.; Suh, Y. D. Single-Molecule Surface-Enhanced Raman Spectroscopy: A Perspective on the Current Status Phys. Chem. Chem. Phys. 2013, 14, 5276-5287
6. Cao, Y. W. C.; Jin, R. C.; Mirkin, C. A. Nanoparticles with Raman Spectroscopic Fingerprints for DNA and RNA Detection Science 2002, 297, 1536-1540
7. Graham, D.; Thompson, D. G.; Smith, W. E.; Faulds, K. Control of Enhanced Raman Scattering Using a DNA-Based Assembly Process of Dye-Coded Nanoparticles Nat. Nanotechnol. 2008, 3, 548-551
8. Lim, D.-K.; Jeon, K.-S.; Hwang, J.-H.; Kim, H.; Kwon, S.; Suh, Y. D.; Nam, J.-M. Highly Uniform and Reproducible Surface-Enhanced Raman Scattering from DNA-Tailorable Nanoparticles with 1-nm Interior Gap Nat. Nanotechnol. 2011, 6, 452-460
9. Lim, D.-K.; Jeon, K.-S.; Kim, H. M.; Nam, J.-M.; Suh, Y. D. Nanogap-Engineerable Raman-Active Nanodumbbells for Single-Molecule Detection Nat. Mater. 2010, 9, 60-67
10. Rothemund, P. W. K. Folding DNA to Create Nanoscale Shapes and Patterns Nature 2006, 440, 297-302
11. Pal, S.; Deng, Z. T.; Ding, B. Q.; Yan, H.; Liu, Y. DNA-Origami-Directed Self-Assembly of Discrete Silver-Nanoparticle Architectures Angew. Chem., Int. Ed. 2010, 49, 2700-2704
12. Ding, B. Q.; Deng, Z. T.; Yan, H.; Cabrini, S.; Zuckermann, R. N.; Bokor, J. Gold Nanoparticle Self-Similar Chain Structure Organized by DNA Origami J. Am. Chem. Soc. 2010, 132, 3248
13. Kuzyk, A.; Schreiber, R.; Fan, Z. Y.; Pardatscher, G.; Roller, E. M.; Hogele, A.; Simmel, F. C.; Govorov, A. O.; Liedl, T. DNA-Based Self-Assembly of Chiral Plasmonic Nanostructures with Tailored Optical Response Nature 2012, 483, 311-314
14. Acuna, G. P.; Moller, F. M.; Holzmeister, P.; Beater, S.; Lalkens, B.; Tinnefeld, P. Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas Science 2012, 338, 506-510
15. Pal, S.; Dutta, P.; Wang, H. N.; Deng, Z. T.; Zou, S. L.; Yan, H.; Liu, Y. Quantum Efficiency Modification of Organic Fluorophores Using Gold Nanoparticles on DNA Origami Scaffolds J. Phys. Chem. C 2013, 117, 12735-12744
16. Joseph, V.; Matschulat, A.; Polte, J.; Rolf, S.; Emmerling, F.; Kneipp, J. SERS Enhancement of Gold Nanospheres of Defined Size J. Raman Spectrosc. 2011, 42, 1736-1742
17. Park, T.; Lee, S.; Seong, G. H.; Choo, J.; Lee, E. K.; Kim, Y. S.; Ji, W. H.; Hwang, S. Y.; Gweon, D. G. Highly Sensitive Signal Detection of Duplex Dye-Labelled DNA Oligonucleotides in a Pdms Microfluidic Chip: Confocal Surface-Enhanced Raman Spectroscopic Study Lab Chip 2005, 5, 437-442
18. Stokes, R. J.; Macaskill, A.; Lundahl, P. J.; Smith, W. E.; Faulds, K.; Graham, D. Quantitative Enhanced Raman Scattering of Labeled DNA from Gold and Silver Nanoparticles Small 2007, 3, 1593-1601
19. Mock, J. J.; Hill, R. T.; Degiron, A.; Zauscher, S.; Chilkoti, A.; Smith, D. R. Distance-Dependent Plasmon Resonant Coupling between a Gold Nanoparticle and Gold Film Nano Lett. 2008, 8, 2245-2252
20. Cutler, J. I.; Auyeung, E.; Mirkin, C. A. Spherical Nucleic Acids J. Am. Chem. Soc. 2012, 134, 1376-1391
21. Draine, B. T.; Flatau, P. J. Discrete-Dipole Approximation for Scattering Calculations J. Opt. Soc. Am. A 1994, 11, 1491-1499
22. Flatau, P. J.; Draine, B. T. Fast Near Field Calculations in the Discrete Dipole Approximation for Regular Rectilinear Grids Opt. Express 2012, 20, 1247-1252
23. Jang, N. H. The Coordination Chemistry of DNA Nucleosides on Gold Nanoparticles as a Probe by SERS Bull. Korean Chem. Soc. 2002, 23, 1790-1800
24. Treffer, R.; Lin, X.; Bailo, E.; Deckert-Gaudig, T.; Deckert, V. Distinction of Nucleobases-A Tip-Enhanced Raman Approach Beilstein J. Nanotechnol. 2011, 2, 628-637
25. Wustholz, K. L.; Henry, A. I.; McMahon, J. M.; Freeman, R. G.; Valley, N.; Piotti, M. E.; Natan, M. J.; Schatz, G. C.; Van Duyne, R. P. Structure-Activity Relationships in Gold Nanoparticle Dimers and Trimers for Surface-Enhanced Raman Spectroscopy J. Am. Chem. Soc. 2010, 132, 10903-10910
26. Rinker, S.; Ke, Y.; Liu, Y.; Chhabra, R.; Yan, H. Self-Assembled DNA Nanostructures for Distance-Dependent Multivalent Ligand-Protein Binding Nat. Nanotechnol. 2008, 3, 418-422
27. Keller, A.; Bald, I.; Rotaru, A.; Cauet, E.; Gothelf, K. V.; Besenbacher, F. Probing Electron-Induced Bond Cleavage at the Single-Molecule Level Using DNA Origami Templates ACS Nano 2012, 6, 4392-4399