메뉴 건너뛰기




Volumn 18, Issue 4, 2016, Pages 1200-1211

Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A; ARCHAEAL DNA; CARBOHYDRATE; CARBON; RNA 16S;

EID: 84957998954     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/1462-2920.13142     Document Type: Article
Times cited : (190)

References (65)
  • 1
    • 79951588928 scopus 로고    scopus 로고
    • Microbial extracellular enzymes and the marine carbon cycle
    • Arnosti, C. (2011) Microbial extracellular enzymes and the marine carbon cycle. Ann Rev Mar Sci 3: 401-425.
    • (2011) Ann Rev Mar Sci , vol.3 , pp. 401-425
    • Arnosti, C.1
  • 2
    • 57449106295 scopus 로고    scopus 로고
    • Identification of components of electron transport chains in the extremely thermoacidophilic crenarchaeon Metallosphaera sedula through iron and sulfur compound oxidation transcriptomes
    • Auernik, K.S., and Kelly, R.M. (2008) Identification of components of electron transport chains in the extremely thermoacidophilic crenarchaeon Metallosphaera sedula through iron and sulfur compound oxidation transcriptomes. Appl Environ Microbiol 74: 7723-7732.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 7723-7732
    • Auernik, K.S.1    Kelly, R.M.2
  • 3
    • 84942291008 scopus 로고    scopus 로고
    • Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria
    • Baker, B.J., Lazar, C.S., Teske, A.P., and Dick, G.J. (2015) Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. Microbiome 3: 14.
    • (2015) Microbiome , vol.3 , pp. 14
    • Baker, B.J.1    Lazar, C.S.2    Teske, A.P.3    Dick, G.J.4
  • 4
    • 33644821142 scopus 로고    scopus 로고
    • Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru
    • Biddle, J.F., Lipp, J.S., Lever, M.A., Llyod, K.G., Sorensen, K.B., Anderson, R., etal. (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. PNAS 103: 3846-3851.
    • (2006) PNAS , vol.103 , pp. 3846-3851
    • Biddle, J.F.1    Lipp, J.S.2    Lever, M.A.3    Llyod, K.G.4    Sorensen, K.B.5    Anderson, R.6
  • 5
    • 48749117805 scopus 로고    scopus 로고
    • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    • Biddle, J.F., Fitz-Gibbon, S., Schuster, S.C., Brenchley, J.E., and House, C.H. (2008) Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. PNAS 105: 10583-10588.
    • (2008) PNAS , vol.105 , pp. 10583-10588
    • Biddle, J.F.1    Fitz-Gibbon, S.2    Schuster, S.C.3    Brenchley, J.E.4    House, C.H.5
  • 6
    • 0028603326 scopus 로고
    • Metabolism of methanogens
    • Blaut, M. (1994) Metabolism of methanogens. A Van Leeuw 66: 187-208.
    • (1994) A Van Leeuw , vol.66 , pp. 187-208
    • Blaut, M.1
  • 7
    • 84896282192 scopus 로고    scopus 로고
    • Carbohydrate metabolism in Archaea: Current insights into unusual enzymes and pathways and their regulation
    • Bräsen, C., Esser, D., Rauch, B., and Siebers, B. (2014) Carbohydrate metabolism in Archaea: Current insights into unusual enzymes and pathways and their regulation. Microbiol Mol Biol Rev 78: 89-175.
    • (2014) Microbiol Mol Biol Rev , vol.78 , pp. 89-175
    • Bräsen, C.1    Esser, D.2    Rauch, B.3    Siebers, B.4
  • 8
    • 84871712835 scopus 로고    scopus 로고
    • Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation
    • Buckel, W., and Thauer, R.K. (2013) Energy conservation via electron bifurcating ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation. Biochim Biophys 1827: 94-113.
    • (2013) Biochim Biophys , vol.1827 , pp. 94-113
    • Buckel, W.1    Thauer, R.K.2
  • 9
    • 84883287892 scopus 로고    scopus 로고
    • Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
    • Castelle, C.J., Hug, L.A., Wrighton, K.C., Thomas, B.C., Williams, K.H., Wu, D., etal. (2013) Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nat Commun 4: 2120.
    • (2013) Nat Commun , vol.4 , pp. 2120
    • Castelle, C.J.1    Hug, L.A.2    Wrighton, K.C.3    Thomas, B.C.4    Williams, K.H.5    Wu, D.6
  • 10
    • 0036225848 scopus 로고    scopus 로고
    • The roles of the polytopic membrane proteins NarK, NarU and NirC in Escherichia coli K-12: two nitrate and three nitrite transporters
    • Clegg, S., Yu, F., Griffiths, L., and Cole, J.A. (2002) The roles of the polytopic membrane proteins NarK, NarU and NirC in Escherichia coli K-12: two nitrate and three nitrite transporters. Mol Microbiol 44: 143-155.
    • (2002) Mol Microbiol , vol.44 , pp. 143-155
    • Clegg, S.1    Yu, F.2    Griffiths, L.3    Cole, J.A.4
  • 11
    • 0023425517 scopus 로고
    • An extremely thermostable extracellular proteinase from a strain of the archaebacterium Desulfurococcus growing at 88 °C
    • Cowan, D.A., Smolenski, K.A., Daniel, R.M., and Morgan, H.W. (1987) An extremely thermostable extracellular proteinase from a strain of the archaebacterium Desulfurococcus growing at 88 °C. Biochem J 247: 121-133.
    • (1987) Biochem J , vol.247 , pp. 121-133
    • Cowan, D.A.1    Smolenski, K.A.2    Daniel, R.M.3    Morgan, H.W.4
  • 12
    • 77954403053 scopus 로고    scopus 로고
    • BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
    • Criscuolo, A., and Gribaldo, S. (2010) BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol Biol 10: 210.
    • (2010) BMC Evol Biol , vol.10 , pp. 210
    • Criscuolo, A.1    Gribaldo, S.2
  • 13
    • 78649275431 scopus 로고    scopus 로고
    • Halogeometricum rufum sp. nov., a halophilic archaeon from a marine solar saltern, and emended description of the genus Halogeometricum
    • Cui, H.-L., Yang, X., Gao, X., Li, X.-Y., Xu, X.-W., Zhou, Y.-G., etal. (2010) Halogeometricum rufum sp. nov., a halophilic archaeon from a marine solar saltern, and emended description of the genus Halogeometricum. Int J Syst Evol Microbiol 60: 2613-2617.
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 2613-2617
    • Cui, H.-L.1    Yang, X.2    Gao, X.3    Li, X.-Y.4    Xu, X.-W.5    Zhou, Y.-G.6
  • 15
    • 84867649459 scopus 로고    scopus 로고
    • Archaea in organic-lean and organic-rich marine subsurface sediments: an environmental gradient reflected in distinct lineages
    • Durbin, A.M., and Teske, A. (2012) Archaea in organic-lean and organic-rich marine subsurface sediments: an environmental gradient reflected in distinct lineages. Front Microbiol 3: 168.
    • (2012) Front Microbiol , vol.3 , pp. 168
    • Durbin, A.M.1    Teske, A.2
  • 16
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 17
    • 84944739223 scopus 로고    scopus 로고
    • Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics
    • Evans, P.N., Parks, D.H., Chadwick, G.L., Robbins, S.J., Orphan, V.J., Golding, S.D., and Tyson, G.W. (2015) Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics. Science 350: 434-438.
    • (2015) Science , vol.350 , pp. 434-438
    • Evans, P.N.1    Parks, D.H.2    Chadwick, G.L.3    Robbins, S.J.4    Orphan, V.J.5    Golding, S.D.6    Tyson, G.W.7
  • 18
    • 0018673497 scopus 로고
    • Early oxidation of organic matter in pelagic sediments of the eastern equatorial Atlantic: suboxic diagenesis
    • Froelich, P.N., Klinkhammer, G.P., Blender, M.L., Luedtke, N.A., Heath, G.R., Cullen, D., etal. (1979) Early oxidation of organic matter in pelagic sediments of the eastern equatorial Atlantic: suboxic diagenesis. Geochim Cosmochim Acta 43: 1075-1090.
    • (1979) Geochim Cosmochim Acta , vol.43 , pp. 1075-1090
    • Froelich, P.N.1    Klinkhammer, G.P.2    Blender, M.L.3    Luedtke, N.A.4    Heath, G.R.5    Cullen, D.6
  • 19
    • 27744470399 scopus 로고    scopus 로고
    • Formaldehyde activating enzyme (Fae) and hexulose-6-phosphate synthase (Hps) in Methanosarcina barkeri: a possible function in ribose-5-phosphate biosynthesis
    • Goenrich, M., Thauer, R.K., Yurimoto, H., and Kato, N. (2005) Formaldehyde activating enzyme (Fae) and hexulose-6-phosphate synthase (Hps) in Methanosarcina barkeri: a possible function in ribose-5-phosphate biosynthesis. Arch Microbiol 184: 41-48.
    • (2005) Arch Microbiol , vol.184 , pp. 41-48
    • Goenrich, M.1    Thauer, R.K.2    Yurimoto, H.3    Kato, N.4
  • 20
    • 2142697116 scopus 로고    scopus 로고
    • Energy-converting [NiFe] hydrogenases from Archaea and extremophiles: ancestors of complex I
    • Hedderich, R. (2004) Energy-converting [NiFe] hydrogenases from Archaea and extremophiles: ancestors of complex I. J Bioenerg Biomembr 36: 65-75.
    • (2004) J Bioenerg Biomembr , vol.36 , pp. 65-75
    • Hedderich, R.1
  • 21
    • 0242498430 scopus 로고    scopus 로고
    • Structure and function of enzymes of the Leloir pathway for galactose metabolism
    • Holden, H.M., Rayment, I., and Thoden, J.B. (2003) Structure and function of enzymes of the Leloir pathway for galactose metabolism. J Biol Chem 278: 43885-43888.
    • (2003) J Biol Chem , vol.278 , pp. 43885-43888
    • Holden, H.M.1    Rayment, I.2    Thoden, J.B.3
  • 22
    • 84865727174 scopus 로고    scopus 로고
    • The unusual cell biology of the hyperthermophilic Crenarchaeon Ignicoccus hospitalis
    • Huber, H., Küper, U., Daxer, S., and Rachel, R. (2012) The unusual cell biology of the hyperthermophilic Crenarchaeon Ignicoccus hospitalis. A Van Leeuw 102: 203-219.
    • (2012) A Van Leeuw , vol.102 , pp. 203-219
    • Huber, H.1    Küper, U.2    Daxer, S.3    Rachel, R.4
  • 23
    • 0028290650 scopus 로고
    • A seven-gene operon essential for formate-dependent nitrite reduction to ammonia by enteric bacteria
    • Hussain, H., Grove, J., Griffiths, L., Busby, S., and Cole, J. (1994) A seven-gene operon essential for formate-dependent nitrite reduction to ammonia by enteric bacteria. Mol Microbiol 12: 153-163.
    • (1994) Mol Microbiol , vol.12 , pp. 153-163
    • Hussain, H.1    Grove, J.2    Griffiths, L.3    Busby, S.4    Cole, J.5
  • 24
    • 0025677844 scopus 로고
    • Variations in sedimentary carbon remineralization rates in the White Oak River estuary, North Carolina
    • Kelley, C.A., Martens, C.S., and Chanton, J.P. (1990) Variations in sedimentary carbon remineralization rates in the White Oak River estuary, North Carolina. Limnol Oceanogr 35: 372-383.
    • (1990) Limnol Oceanogr , vol.35 , pp. 372-383
    • Kelley, C.A.1    Martens, C.S.2    Chanton, J.P.3
  • 25
    • 77955610491 scopus 로고    scopus 로고
    • Clostridium ljungdahlii represents a microbial production platform based on syngas
    • Köpke, M., Held, C., Hujer, S., Liesegang, H., Wiezer, A., Wollherr, A., etal. (2010) Clostridium ljungdahlii represents a microbial production platform based on syngas. PNAS 107: 13087-13092.
    • (2010) PNAS , vol.107 , pp. 13087-13092
    • Köpke, M.1    Held, C.2    Hujer, S.3    Liesegang, H.4    Wiezer, A.5    Wollherr, A.6
  • 26
    • 84867745042 scopus 로고    scopus 로고
    • Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
    • Kubo, K., Lloyd, K.G., Biddle, J.F., Amann, R., Teske, A., and Knittel, K. (2012) Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments. ISME J 6: 1949-1965.
    • (2012) ISME J , vol.6 , pp. 1949-1965
    • Kubo, K.1    Lloyd, K.G.2    Biddle, J.F.3    Amann, R.4    Teske, A.5    Knittel, K.6
  • 28
    • 84937042918 scopus 로고    scopus 로고
    • Environmental controls on intragroup diversity of the uncultured benthic archaea of the miscellaneous Crenarchaeotal group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA)
    • Lazar, C.S., Biddle, J.F., Meador, T.B., Blair, N., Hinrichs, K.-U., and Teske, A.P. (2015) Environmental controls on intragroup diversity of the uncultured benthic archaea of the miscellaneous Crenarchaeotal group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA). Environ Microbiol 17: 2228-2238.
    • (2015) Environ Microbiol , vol.17 , pp. 2228-2238
    • Lazar, C.S.1    Biddle, J.F.2    Meador, T.B.3    Blair, N.4    Hinrichs, K.-U.5    Teske, A.P.6
  • 29
    • 77949555357 scopus 로고    scopus 로고
    • Acetogenesis in deep subseafloor sediments of the Juan de Fuca ridge flank: a synthesis of geochemical, thermodynamic, and gene-based evidence
    • Lever, M.A., Heuer, V.B., Morono, Y., Masui, N., Schmidt, F., Alperin, M.J., etal. (2010) Acetogenesis in deep subseafloor sediments of the Juan de Fuca ridge flank: a synthesis of geochemical, thermodynamic, and gene-based evidence. Geomicrobiol J 27: 183-211.
    • (2010) Geomicrobiol J , vol.27 , pp. 183-211
    • Lever, M.A.1    Heuer, V.B.2    Morono, Y.3    Masui, N.4    Schmidt, F.5    Alperin, M.J.6
  • 30
    • 84874978260 scopus 로고    scopus 로고
    • Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basalt
    • Lever, M.A., Rouxel, O., Alt, J.C., Shimizu, N., Ono, S., Coggon, R.M., etal. (2013) Evidence for microbial carbon and sulfur cycling in deeply buried ridge flank basalt. Science 339: 1305-1308.
    • (2013) Science , vol.339 , pp. 1305-1308
    • Lever, M.A.1    Rouxel, O.2    Alt, J.C.3    Shimizu, N.4    Ono, S.5    Coggon, R.M.6
  • 31
    • 84876487837 scopus 로고    scopus 로고
    • Assessing production of the ubiquitous archaeal diglycosyl tetraether lipids in marine subsurface sediment using intramolecular stable isotope probing
    • Lin, Y.-S., Lipp, J.S., Elvert, M., Holler, T., and Hinrichs, K.-U. (2012) Assessing production of the ubiquitous archaeal diglycosyl tetraether lipids in marine subsurface sediment using intramolecular stable isotope probing. Environ Microbiol 15: 1634-1646.
    • (2012) Environ Microbiol , vol.15 , pp. 1634-1646
    • Lin, Y.-S.1    Lipp, J.S.2    Elvert, M.3    Holler, T.4    Hinrichs, K.-U.5
  • 32
    • 50049107012 scopus 로고    scopus 로고
    • Significant contribution of Archaea to extant biomass in marine subsurface sediments
    • Lipp, J.S., Morono, Y., Inagaki, F., and Hinrichs, K.-U. (2008) Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature 454: 991-994.
    • (2008) Nature , vol.454 , pp. 991-994
    • Lipp, J.S.1    Morono, Y.2    Inagaki, F.3    Hinrichs, K.-U.4
  • 33
    • 80052627969 scopus 로고    scopus 로고
    • Environmental evidence for net methane production and oxidation in putative ANaerobic MEthanotrophic (ANME) archaea
    • Lloyd, K.G., Alperin, M.J., and Teske, A. (2011) Environmental evidence for net methane production and oxidation in putative ANaerobic MEthanotrophic (ANME) archaea. Environ Microbiol 13: 2548-2564.
    • (2011) Environ Microbiol , vol.13 , pp. 2548-2564
    • Lloyd, K.G.1    Alperin, M.J.2    Teske, A.3
  • 36
    • 0034664991 scopus 로고    scopus 로고
    • Tetrahydrofolate and tetrahydromethanopterin compared: functionally distinct carriers in C1 metabolism
    • Maden, B.E.H. (2000) Tetrahydrofolate and tetrahydromethanopterin compared: functionally distinct carriers in C1 metabolism. Biochem J 350: 609-629.
    • (2000) Biochem J , vol.350 , pp. 609-629
    • Maden, B.E.H.1
  • 37
    • 1642295867 scopus 로고    scopus 로고
    • Two distinct heterodisulfide reductase-like enzymes in the sulfate-reducing archaeon Archaeoglobus profundus
    • Mander, G.J., Pierik, A.J., Huber, H., and Hedderich, R. (2004) Two distinct heterodisulfide reductase-like enzymes in the sulfate-reducing archaeon Archaeoglobus profundus. Eur J Biochem 271: 1106-1116.
    • (2004) Eur J Biochem , vol.271 , pp. 1106-1116
    • Mander, G.J.1    Pierik, A.J.2    Huber, H.3    Hedderich, R.4
  • 38
  • 39
    • 84930233392 scopus 로고    scopus 로고
    • The archaeal lipidome in estuarine sediment dominated by members of the Miscellaneous Crenarchaeotal Group
    • Meador, T.B., Bowles, M., Lazar, C.S., Zhu, C., Teske, A., and Hinrichs, K.-U. (2015) The archaeal lipidome in estuarine sediment dominated by members of the Miscellaneous Crenarchaeotal Group. Environ Microbiol 17: 2441-2458.
    • (2015) Environ Microbiol , vol.17 , pp. 2441-2458
    • Meador, T.B.1    Bowles, M.2    Lazar, C.S.3    Zhu, C.4    Teske, A.5    Hinrichs, K.-U.6
  • 40
    • 84894363922 scopus 로고    scopus 로고
    • Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
    • Meng, J., Xu, J., Qin, D., He, Y., Xiao, X., and Wang, F. (2014) Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses. ISME J 8: 650-659.
    • (2014) ISME J , vol.8 , pp. 650-659
    • Meng, J.1    Xu, J.2    Qin, D.3    He, Y.4    Xiao, X.5    Wang, F.6
  • 41
    • 84922362345 scopus 로고    scopus 로고
    • IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
    • Nguyen, L.-T., Schmidt, H.A., von Haeseler, A., and Minh, B.Q. (2014) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 32: 268-274.
    • (2014) Mol Biol Evol , vol.32 , pp. 268-274
    • Nguyen, L.-T.1    Schmidt, H.A.2    von Haeseler, A.3    Minh, B.Q.4
  • 42
    • 0025128277 scopus 로고
    • Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria
    • Page, L., Griffiths, L., and Cole, J.A. (1990) Different physiological roles of two independent pathways for nitrite reduction to ammonia by enteric bacteria. Arch Microbiol 154: 349-354.
    • (1990) Arch Microbiol , vol.154 , pp. 349-354
    • Page, L.1    Griffiths, L.2    Cole, J.A.3
  • 44
    • 84926495796 scopus 로고    scopus 로고
    • CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    • Parks, D.H., Imelfort, M., Skennerton, C.T., Hugenholtz, P., and Tyson, G.W. (2014) CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. PeerJ 2: e554v551.
    • (2014) PeerJ , vol.2
    • Parks, D.H.1    Imelfort, M.2    Skennerton, C.T.3    Hugenholtz, P.4    Tyson, G.W.5
  • 45
    • 0034882854 scopus 로고    scopus 로고
    • The fla gene cluster is involved in the biogenesis of flagella in Halobacterium salinarum
    • Patenge, N., Berendes, A., Engelhardt, H., Schuster, S.C., and Oesterhelt, D. (2001) The fla gene cluster is involved in the biogenesis of flagella in Halobacterium salinarum. Mol Microbiol 41: 653-663.
    • (2001) Mol Microbiol , vol.41 , pp. 653-663
    • Patenge, N.1    Berendes, A.2    Engelhardt, H.3    Schuster, S.C.4    Oesterhelt, D.5
  • 46
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: a de novo assembler for single-cell and metagenomics sequencing data with highly uneven depth
    • Peng, Y., Leung, H.C.M., Yiu, S.M., and Chin, F.Y.L. (2012) IDBA-UD: a de novo assembler for single-cell and metagenomics sequencing data with highly uneven depth. Bioinformatics 28: 1420-1428.
    • (2012) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.M.2    Yiu, S.M.3    Chin, F.Y.L.4
  • 47
    • 84961479612 scopus 로고
    • Carbon isotope fractionation by autotrophic bacteria with three different C 02 fixation pathways
    • Preuß, A., Schauder, R., Fuchs, G., and Stichler, W. (1989) Carbon isotope fractionation by autotrophic bacteria with three different C 02 fixation pathways. Z Naturforsch 44: 397-402.
    • (1989) Z Naturforsch , vol.44 , pp. 397-402
    • Preuß, A.1    Schauder, R.2    Fuchs, G.3    Stichler, W.4
  • 48
    • 54949153045 scopus 로고    scopus 로고
    • Acetogenesis and the Wood-Ljungdahl pathway of CO2 fixation
    • Ragsdale, S.W., and Pierce, E. (2008) Acetogenesis and the Wood-Ljungdahl pathway of CO2 fixation. Biochim Biophys 1784: 1873-1898.
    • (2008) Biochim Biophys , vol.1784 , pp. 1873-1898
    • Ragsdale, S.W.1    Pierce, E.2
  • 49
    • 84873396448 scopus 로고    scopus 로고
    • Molecular tools for the detection of nitrogen cycling archaea
    • Rusch, A. (2013) Molecular tools for the detection of nitrogen cycling archaea. Archaea 213: 676450.
    • (2013) Archaea , vol.213 , pp. 676450
    • Rusch, A.1
  • 50
    • 0037934657 scopus 로고    scopus 로고
    • A simple energy-conserving system: proton reduction coupled to proton translocation
    • Sapra, R., Bagramyan, K., and Adams, M.W.W. (2003) A simple energy-conserving system: proton reduction coupled to proton translocation. PNAS 100: 7545-7550.
    • (2003) PNAS , vol.100 , pp. 7545-7550
    • Sapra, R.1    Bagramyan, K.2    Adams, M.W.W.3
  • 51
    • 0003688056 scopus 로고
    • Oxidative and reductive acetyl CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum
    • Schauder, R., Preu, A., Jetten, M., and Fuchs, G. (1989) Oxidative and reductive acetyl CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum. Arch Microbiol 151: 84-89.
    • (1989) Arch Microbiol , vol.151 , pp. 84-89
    • Schauder, R.1    Preu, A.2    Jetten, M.3    Fuchs, G.4
  • 52
    • 84903376499 scopus 로고    scopus 로고
    • Crenarchaeal heterotrophy in salt marsh sediments
    • Seyler, L.M., McGuinness, L.M., and Kerkhof, L.J. (2014) Crenarchaeal heterotrophy in salt marsh sediments. ISME J 8: 1534-1543.
    • (2014) ISME J , vol.8 , pp. 1534-1543
    • Seyler, L.M.1    McGuinness, L.M.2    Kerkhof, L.J.3
  • 53
    • 84871956840 scopus 로고    scopus 로고
    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
    • Sharon, I., Morowitz, M.J., Thomas, B.C., Costello, E.K., Relman, D.A., and Banfield, J.F. (2013) Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res 23: 111-120.
    • (2013) Genome Res , vol.23 , pp. 111-120
    • Sharon, I.1    Morowitz, M.J.2    Thomas, B.C.3    Costello, E.K.4    Relman, D.A.5    Banfield, J.F.6
  • 54
    • 0036024581 scopus 로고    scopus 로고
    • Enzymology and bioenergetics of respiratory nitrite ammonification
    • Simon, J. (2002) Enzymology and bioenergetics of respiratory nitrite ammonification. FEMS Microbiol Rev 26: 285-309.
    • (2002) FEMS Microbiol Rev , vol.26 , pp. 285-309
    • Simon, J.1
  • 55
    • 36249021315 scopus 로고    scopus 로고
    • Genome-wide experimental determination of barriers to horizontal gene transfer
    • Sorek, R., Zhu, Y., Creevey, C.J., Francino, M.P., Bork, P., and Rubin, E.M. (2007) Genome-wide experimental determination of barriers to horizontal gene transfer. Science 318: 1449-1452.
    • (2007) Science , vol.318 , pp. 1449-1452
    • Sorek, R.1    Zhu, Y.2    Creevey, C.J.3    Francino, M.P.4    Bork, P.5    Rubin, E.M.6
  • 57
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 58
    • 84930816939 scopus 로고    scopus 로고
    • ProDeGe: a computational protocol for fully automated decontamination of genomes
    • Tennessen, K., Andersen, E., Clingenpeel, S., Rinke, C., Lundberg, D.S., Han, J., etal. (2015) ProDeGe: a computational protocol for fully automated decontamination of genomes. ISME J. doi:10.1038/ismej.2015.100.
    • (2015) ISME J
    • Tennessen, K.1    Andersen, E.2    Clingenpeel, S.3    Rinke, C.4    Lundberg, D.S.5    Han, J.6
  • 59
    • 41149093627 scopus 로고    scopus 로고
    • Uncultured archaea in deep marine subsurface sediments: have we caught them all?
    • Teske, A., and Sorensen, K.B. (2008) Uncultured archaea in deep marine subsurface sediments: have we caught them all? ISME J 2: 3-18.
    • (2008) ISME J , vol.2 , pp. 3-18
    • Teske, A.1    Sorensen, K.B.2
  • 60
    • 47549119041 scopus 로고    scopus 로고
    • Methanogenic archaea: ecologically relevant differences in energy conservation
    • Thauer, R.K., Kaster, A.-K., Seedorf, H., Buckel, W., and Hedderich, R. (2008) Methanogenic archaea: ecologically relevant differences in energy conservation. Nat Rev 6: 579-591.
    • (2008) Nat Rev , vol.6 , pp. 579-591
    • Thauer, R.K.1    Kaster, A.-K.2    Seedorf, H.3    Buckel, W.4    Hedderich, R.5
  • 61
    • 71549150951 scopus 로고    scopus 로고
    • Hydrogenase 2 is most and hydrogenase 1 is less responsible for H2 production by Escherichia coli under glycerol fermentation at neutral and slightly alkaline pH
    • Trchounian, K., and Trchounian, A. (2009) Hydrogenase 2 is most and hydrogenase 1 is less responsible for H2 production by Escherichia coli under glycerol fermentation at neutral and slightly alkaline pH. Int J of Hydrogen Energy 34: 8839-8845.
    • (2009) Int J of Hydrogen Energy , vol.34 , pp. 8839-8845
    • Trchounian, K.1    Trchounian, A.2
  • 63
    • 15844406532 scopus 로고    scopus 로고
    • Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. II. Dynamic response to famine and feast, activation of the methylglyoxal pathway and oscillatory behaviour
    • Weber, J., Kayser, A., and Rinas, U. (2005) Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. II. Dynamic response to famine and feast, activation of the methylglyoxal pathway and oscillatory behaviour. Microbiology 151: 707-716.
    • (2005) Microbiology , vol.151 , pp. 707-716
    • Weber, J.1    Kayser, A.2    Rinas, U.3
  • 64
    • 84894028413 scopus 로고    scopus 로고
    • Gas chromatographic analysis of methanol and ethanol in marine sediment pore waters: validation and implementation of three pretreatment techniques
    • Zhuang, G.-C., Lin, Y.-S., Elvert, M., Heuer, V.B., and Hinrichs, K.-U. (2014) Gas chromatographic analysis of methanol and ethanol in marine sediment pore waters: validation and implementation of three pretreatment techniques. Mar Chem 160: 82-90.
    • (2014) Mar Chem , vol.160 , pp. 82-90
    • Zhuang, G.-C.1    Lin, Y.-S.2    Elvert, M.3    Heuer, V.B.4    Hinrichs, K.-U.5
  • 65
    • 0030472217 scopus 로고    scopus 로고
    • Identification of a third secondary carrier (DcuC) for anaerobic C4-dicarboxylate transport in Escherichia coli: roles of the three Dcu carriers in uptake and exchange
    • Zientz, E., Six, S., and Unden, G. (1996) Identification of a third secondary carrier (DcuC) for anaerobic C4-dicarboxylate transport in Escherichia coli: roles of the three Dcu carriers in uptake and exchange. J Bacteriol 178: 7241-7247.
    • (1996) J Bacteriol , vol.178 , pp. 7241-7247
    • Zientz, E.1    Six, S.2    Unden, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.