-
1
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam, M. et al. (2011) Enterotypes of the human gut microbiome. Nature, 473, 174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
-
2
-
-
77952243141
-
Qiime allows analysis of high-throughput community sequencing data
-
Caporaso, J. et al. (2010) Qiime allows analysis of high-throughput community sequencing data. Nat. Methods, 7, 335-336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.1
-
4
-
-
84874758926
-
Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny
-
Chang, Q. et al. (2011) Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny. BMC Bioinformatics, 12, 118.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 118
-
-
Chang, Q.1
-
5
-
-
78650868433
-
Disordered microbial communities in the upper respiratory tract of cigarette smokers
-
Charlson, E. et al. (2010) Disordered microbial communities in the upper respiratory tract of cigarette smokers. PLoS One, 5, e15216.
-
(2010)
PLoS One
, vol.5
-
-
Charlson, E.1
-
6
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale, E. et al. (2008) Functional metagenomic profiling of nine biomes. Nature, 452, 629-632.
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.1
-
8
-
-
84865104842
-
Comparisons of distance methods for combining covariates and abundances in microbiome studies
-
Fukuyama, J. et al. (2012) Comparisons of distance methods for combining covariates and abundances in microbiome studies. Pac. Symp. Biocomput., 12, 213-224.
-
(2012)
Pac. Symp. Biocomput.
, vol.12
, pp. 213-224
-
-
Fukuyama, J.1
-
9
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill, S. et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science, 312, 1355-1359.
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.1
-
10
-
-
66349083859
-
Topographical and temporal diversity of the human skin microbiome
-
Grice, E. et al. (2009) Topographical and temporal diversity of the human skin microbiome. Science, 324, 1190-1192.
-
(2009)
Science
, vol.324
, pp. 1190-1192
-
-
Grice, E.1
-
11
-
-
77955874456
-
Direct sequencing of the human microbiome readily reveals community differences
-
Kuczynski, J. et al. (2010a) Direct sequencing of the human microbiome readily reveals community differences. Genome Biol., 11, 210-218.
-
(2010)
Genome Biol
, vol.11
, pp. 210-218
-
-
Kuczynski, J.1
-
12
-
-
77957672841
-
Microbial community resemblance methods differ in their ability to detect biologically relevant patterns
-
Kuczynski, J. et al. (2010b) Microbial community resemblance methods differ in their ability to detect biologically relevant patterns. Nat. Methods, 7, 813-819.
-
(2010)
Nat. Methods
, vol.7
, pp. 813-819
-
-
Kuczynski, J.1
-
13
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone, C. and Knight, R. (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol., 71, 8228-8835.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8835
-
-
Lozupone, C.1
Knight, R.2
-
14
-
-
33947269742
-
Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities
-
Lozupone, C. et al. (2007) Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities. Appl. Environ. Microbiol., 73, 1576-1585.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1576-1585
-
-
Lozupone, C.1
-
15
-
-
78751575501
-
Unifrac: an effective distance metric for microbial community comparison
-
Lozupone, C. et al. (2010) Unifrac: an effective distance metric for microbial community comparison. ISME J., 5, 169-172.
-
(2010)
ISME J
, vol.5
, pp. 169-172
-
-
Lozupone, C.1
-
16
-
-
0035133496
-
Fitting multivariate models to community data: a comment on distance-based redundancy analysis
-
McArdle, B. (2001) Fitting multivariate models to community data: a comment on distance-based redundancy analysis. Ecology, 82, 290-297.
-
(2001)
Ecology
, vol.82
, pp. 290-297
-
-
McArdle, B.1
-
17
-
-
0002567040
-
On the compound multinomial distribution, the multivariate ß-distribution, and correlations among proportions
-
Mosimann, J. (1962) On the compound multinomial distribution, the multivariate ß-distribution, and correlations among proportions. Biometrika, 49, 65-82.
-
(1962)
Biometrika
, vol.49
, pp. 65-82
-
-
Mosimann, J.1
-
18
-
-
79956301905
-
Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans
-
Muegge, B. et al. (2011) Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science, 332, 970-974.
-
(2011)
Science
, vol.332
, pp. 970-974
-
-
Muegge, B.1
-
20
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J. et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464, 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
-
21
-
-
69549112742
-
Accurate determination of microbial diversity from 454 pyrosequencing data
-
Quince, C. et al. (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nat. Methods, 6, 639-641.
-
(2009)
Nat. Methods
, vol.6
, pp. 639-641
-
-
Quince, C.1
-
22
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol., 75, 7537.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537
-
-
Schloss, P.1
-
23
-
-
40249113895
-
Evaluating different approaches that test whether microbial communities have the same structure
-
Schloss, P. (2008) Evaluating different approaches that test whether microbial communities have the same structure. ISME J., 2, 265-275.
-
(2008)
ISME J
, vol.2
, pp. 265-275
-
-
Schloss, P.1
-
24
-
-
79952748287
-
Unravelling the effects of the environment and host genotype on the gut microbiome
-
Spor, A. et al. (2011) Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol., 9, 279-290.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 279-290
-
-
Spor, A.1
-
25
-
-
79959585797
-
Phylogenetic beta diversity metrics, trait evolution and inferring the functional beta diversity of communities
-
Swenson, N. (2011) Phylogenetic beta diversity metrics, trait evolution and inferring the functional beta diversity of communities. PloS One, 6, e21264.
-
(2011)
PloS One
, vol.6
-
-
Swenson, N.1
-
26
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe, S. et al. (2005) Comparative metagenomics of microbial communities. Science, 308, 554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.1
-
27
-
-
58749112734
-
Acore gut microbiome in obese and lean twins
-
Turnbaugh, P. et al. (2009)Acore gut microbiome in obese and lean twins. Nature, 457, 480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.1
-
28
-
-
80053462850
-
Metagenomics and personalized medicine
-
Virgin, H. and Todd, J. (2011) Metagenomics and personalized medicine. Cell, 147, 44-56.
-
(2011)
Cell
, vol.147
, pp. 44-56
-
-
Virgin, H.1
Todd, J.2
-
29
-
-
33847291893
-
Quantitative phylogenetic assessment of microbial communities in diverse environments
-
von Mering, C. et al. (2007) Quantitative phylogenetic assessment of microbial communities in diverse environments. Science, 315, 1126-1130.
-
(2007)
Science
, vol.315
, pp. 1126-1130
-
-
von Mering, C.1
-
30
-
-
77955067191
-
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
-
Wu, G. et al. (2010) Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol., 10, 206.
-
(2010)
BMC Microbiol
, vol.10
, pp. 206
-
-
Wu, G.1
-
31
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G. et al. (2011) Linking long-term dietary patterns with gut microbial enterotypes. Science, 334, 105-108.
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.1
|