Erratum: eIF5 and eIF5B together stimulate 48S initiation complex formation during ribosomal scanning (Nucleic Acids Research (2014) 42 (12052-12069) DOI: 10.1093/nar/gku877);EIF5 and eIF5B together stimulate 48S initiation complex formation during ribosomal scanning

Nucleic Acids Research

Volumn 42, Issue 19, 2014, Pages 12052-12069

  Pisareva, Vera P ^a   Pisarev, Andrey V ^a  

^a Downstate Health Sciences University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GUANOSINE TRIPHOSPHATE; INITIATION FACTOR; INITIATION FACTOR 5; INITIATION FACTOR 5B; UNCLASSIFIED DRUG; 5' UNTRANSLATED REGION; EUKARYOTIC INITIATION FACTOR-5B; EUKARYOTIC PEPTIDE INITIATION FACTOR-1A; INITIATION FACTOR 1; INITIATION FACTOR 2; METHIONINE TRANSFER RNA; START CODON;

5' UNTRANSLATED REGION; ARTICLE; CODON USAGE; COMPLEX FORMATION; CONTROLLED STUDY; DNA MODIFICATION; ESCHERICHIA COLI; HYDROLYSIS; MUTATIONAL ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN CROSS LINKING; RNA PROCESSING; TRANSLATION INITIATION; GENETICS; METABOLISM; MUTATION; RIBOSOME; RNA TRANSLATION; START CODON;

5' UNTRANSLATED REGIONS; CODON, INITIATOR; EUKARYOTIC INITIATION FACTOR-1; EUKARYOTIC INITIATION FACTOR-2; EUKARYOTIC INITIATION FACTOR-5; EUKARYOTIC INITIATION FACTORS; GUANOSINE TRIPHOSPHATE; MUTATION; PEPTIDE CHAIN INITIATION, TRANSLATIONAL; RIBOSOMES; RNA, TRANSFER, MET;

EID: 84957555427     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkab068     Document Type: Erratum

References (51)

1. Hinnebusch, A.G. (2011) Molecular mechanism of scanning and start codon selection in eukaryotes. Microbiol. Mol. Biol. Rev., 75, 434-467.
2. Jackson, R.J., Hellen, C.U. and Pestova, T.V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell. Biol., 11, 113-127.
3. Asano, K., Clayton, J., Shalev, A. and Hinnebusch, A.G. (2000) A multifactor complex of eukaryotic initiation factors, eIF1, eIF2, eIF3, eIF5, and initiator tRNA(Met) is an important translation initiation intermediate in vivo. Genes Dev., 14, 2534-2546.
4. Sokabe, M., Fraser, C.S. and Hershey, W.B. (2012) The human translation initiation multi-factor complex promotes methionyl-tRNAi binding to the 40S ribosomal subunit. Nucleic Acids Res., 40, 905-913.
5. Maag, D. and Lorsch, J.R. (2003) Communication between eukaryotic translation initiation factors 1 and 1A on the yeast small ribosomal subunit. J. Mol. Biol., 330, 917-924.
6. Lomakin, I.B., Kolupaeva, V.G., Marintchev, A., Wagner, G. and Pestova, T.V. (2003) Position of eukaryotic initiation factor eIF1 on the 40S ribosomal subunit determined by directed hydroxyl radical probing. Genes Dev., 17, 2786-2797.
7. Yu, Y., Marintchev, A., Kolupaeva, V.G., Unbehaun, A., Veryasova, T., Lai, S.C., Hong, P., Wagner, G., Hellen, C.U. and Pestova, T.V. (2009) Position of eukaryotic translation initiation factor eIF1A on the 40S ribosomal subunit mapped by directed hydroxyl radical probing. Nucleic Acids Res., 37, 5167-5182.
8. Passmore, L.A., Schmeing, T.M., Maag, D., Applefield, D.J., Acker, M.G., Algire, M.A., Lorsch, J.R. and Ramakrishnan, V. (2007) The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome. Mol. Cell, 26, 41-50.
9. Algire, M.A., Maag, D. and Lorsch, J.R. (2005) Pi release from eIF2, not GTP hydrolysis, is the step controlled by start-site selection during eukaryotic translation initiation. Mol. Cell, 20, 251-262.
10. Gingras, A.-C., Raught, B. and Sonenberg, N. (1999) eIF4 initiation factors: Effectors of mRNA recruitment to ribosomes and regulators of translation. Annu. Rev. Biochem., 68, 913-963.
11. Lamphear, B., Kirchenweger, R., Skern, T. and Rhoads, R. (1995) Mapping of functional domains in eukaryotic protein synthesis initiation factor 4G (eIF4G) with picornaviral proteases. Implications for cap-dependent and cap-independent translational initiation. J. Biol. Chem., 270, 21975-21983.
12. Imataka, H. and Sonenberg, N. (1997) Human eukaryotic translation initiation factor-4G (eIF4G) possesses two independent binding sites for eIF4A. Mol. Cell. Biol., 17, 6940-6947.
13. Carberry, S.E. and Goss, D.J. (1991) Interaction of wheat germ protein synthesis initiation factors eIF-3, eIF-(iso)4F, and eIF-4F with mRNA analogues. Biochemistry, 30: 6977-6982.
14. Rogers, G.W.J., Richter, N.J. and Merrick, W.C. (1999) Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A. J. Biol. Chem., 274, 12236-12244.
15. Svitkin, Y.V., Pause, A., Haghighat, A., Pyronnet, S., Witherell, G., Belsham, G.J. and Sonenberg, N. (2001) The requirement for eukaryotic initiation factor 4A (eIF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure. RNA, 7, 382-394.
16. Ray, B.K., Lawson, T.G., Kramer, J.C., Cladaras, M.H., Grifo, J.A., Abramson, R.D., Merrick, W.C. and Thach, R.E. (1985) ATP-dependent unwinding of messenger RNA structure by eukaryotic initiation factors. J. Biol. Chem., 260, 7651-7658.
17. Rozen, F., Edery, I., Meerovitch, K., Dever, T.E., Merrick, W.C. and Sonenberg, N. (1990) Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F. Mol. Cell. Biol., 10, 1134-1144.
18. Hashem, Y., des Georges, A., Dhote, V., Langlois, R., Liao, H.Y., Grassucci, R.A., Hellen, C.U., Pestova, T.V. and Frank, J. (2013) Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29. Cell, 153, 1108-1119.
19. Pisareva, V.P., Pisarev, A.V., Komar, A.A., Hellen, C.U. and Pestova, T.V. (2008) Translation initiation on mammalian mRNAs with structured 5'UTRs requires DExH-box protein DHX29. Cell, 135, 1237-1250.
20. Nanda, J.S., Saini, A.K., Munoz, A.M., Hinnebusch, A.G. and Lorsch, J.R. (2013) Coordinated movements of eukaryotic translation initiation factors eIF1, eIF1A, and eIF5 trigger phosphate release from eIF2 in response to start codon recognition by the ribosomal preinitiation complex. J. Biol. Chem., 288, 5316-5329.
21. Kozak, M. (1987) An analysis of 5-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res., 15, 8125-8148.
22. Kozak, M. (1999) Initiation of translation in prokaryotes and eukaryotes. Gene, 234, 187-208.
23. Pestova, T.V., Lomakin, I.B., Lee, J.H., Choi, S.K., Dever, T.E. and Hellen, C.U. (2000) The joining of ribosomal subunits in eukaryotes requires eIF5B. Nature, 403, 332-335.
24. Unbehaun, A., Borukhov, S.I., Hellen, C.U. and Pestova, T.V. (2004) Release of initiation factors from 48S complexes during ribosomal subunit joining and the link between establishment of codon-anticodon base-pairing and hydrolysis of eIF2-bound GTP. Genes Dev., 18, 3078-3093.
25. Lee, J.H., Choi, S.K., Roll-Mecak, A., Burley, S.K. and Dever, T.E. (1999) Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2. Proc. Natl. Acad. Sci. U.S.A., 96, 4342-4347.
26. Roll-Mecak, A., Cao, C., Dever, T.E. and Burley, S.K. (2000) X-Ray structures of the universal translation initiation factor IF2/eIF5B: Conformational changes on GDP and GTP binding. Cell, 103, 781-792.
27. Battiste, J.L., Pestova, T.V., Hellen, C.U. and Wagner, G. (2000) The eIF1A solution structure reveals a large RNA-binding surface important for scanning function. Mol. Cell, 5, 109-119.
28. Acker, M.G., Shin, B.S., Dever, T.E. and Lorsch, J.R. (2006) Interaction between eukaryotic initiation factors 1A and 5B is required for efficient ribosomal subunit joining. J. Biol. Chem., 281, 8469-8475.
29. Fernandez, I.S., Bai, X.C., Hussain, T., Kelley, A.C., Lorsch, J.R., Ramakrishnan, V. and Scheres, S.H. (2013) Molecular architecture of a eukaryotic translational initiation complex. Science, 342, 1240585.
30. Unbehaun, A., Marintchev, A., Lomakin, I.B., Didenko, T., Wagner, G., Hellen, C.U. and Pestova, T.V. (2007) Position of eukaryotic initiation factor eIF5B on the 80S ribosome mapped by directed hydroxyl radical probing. EMBO J., 26, 3109-3123.
31. Pisareva, V.P., Skabkin, M.A., Hellen, C.U., Pestova, T.V. and Pisarev, A.V. (2011) Dissociation by Pelota, Hbs1 and ABCE1 of mammalian vacant 80S ribosomes and stalled elongation complexes. EMBO J., 30, 1804-1817.
32. Pisarev, A.V., Kolupaeva, V.G., Pisareva, V.P., Merrick, W.C., Hellen, C.U. and Pestova, T.V. (2006) Specific functional interactions of nucleotides at key -3 and +4 positions flanking the initiation codon with components of the mammalian 48S translation initiation complex. Genes Dev., 20, 624-636.
33. Pestova, T.V. and Kolupaeva, V.G. (2002) The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection. Genes Dev., 16, 2906-2922.
34. Kolupaeva, V.G., Unbehaun, A., Lomakin, I.B., Hellen, C.U. and Pestova, T.V. (2005) Binding of eukaryotic initiation factor 3 to ribosomal 40S subunits and its role in ribosomal dissociation and anti-association. RNA, 11, 470-486.
35. Yarian, C., Townsend, H., Czestkowski, W., Sochacka, E., Malkiewicz, A.J., Guenther, R., Miskiewicz, A. and Agris, P.F. (2002) Accurate translation of the genetic code depends on tRNA modified nucleosides. J. Biol. Chem., 277, 16391-16395.
36. Pestova, T.V., Borukhov, S.I. and Hellen, C.U. (1998) Eukaryotic ribosomes require initiation factors 1 and 1A to locate initiation codons. Nature, 394, 854-859.
37. Ivanov, I.P., Firth, A.E., Michel, A.M., Atkins, J.F. and Baranov, P.V. (2011) Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences. Nucleic Acids Res., 39, 4220-4234.
38. Kozak, M. (1989) Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems. Mol. Cell. Biol., 9, 5073-5080.
39. Pisarev, A.V., Kolupaeva, V.G., Yusupov, M.M., Hellen, C.U. and Pestova, T.V. (2008) Ribosomal position and contacts of mRNA in eukaryotic translation initiation complexes. EMBO J., 27, 1609-1621.
40. Pestova, T.V., Hellen, C.U. and Shatsky, I.N. (1996) Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry. Mol. Cell. Biol., 16, 6859-6869.
41. Pestova, T.V., Shatsky, I.N., Fletcher, S.P., Jackson, R.J. and Hellen, C.U. (1998) A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs. Genes Dev., 12, 67-83.
42. Lomakin, I.B. and Steitz, T.A. (2013) The initiation of mammalian protein synthesis and mRNA scanning mechanism. Nature, 500, 307-311.
43. Shin, B.S., Maag, D., Roll-Mecak, A., Arefin, M.S., Burley, S.K., Lorsch, J.R. and Dever, T.E. (2002) Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity. Cell, 111, 1015-1025.
44. Jennings, M.D. and Pavitt, G.D. (2010) eIF5 has GDI activity necessary for translational control by eIF2 phosphorylation. Nature, 465, 378-381.
45. Pestova, T.V., de Breyne, S., Pisarev, A.V., Abaeva, I.S. and Hellen, C.U. (2008) eIF2-dependent and eIF2-independent modes of initiation on the CSFV IRES: A common role of domain II. EMBO J., 27, 1060-1072.
46. Terenin, I.M., Dmitriev, S.E., Andreev, D.E. and Shatsky, I.N. (2008) Eukaryotic translation initiation machinery can operate in a bacterial-like mode without eIF2. Nat. Struct. Mol. Biol., 15, 836-841.
47. Shin, B.S., Acker, M.G., Kim, J.R., Maher, K.N., Arefin, S.M., Lorsch, J.R. and Dever, T.E. (2011) Structural integrity of {alpha}-helix H12 in translation initiation factor eIF5B is critical for 80S complex stability. RNA, 17, 687-696.
48. Luna, R.E., Arthanari, H., Hiraishi, H., Nanda, J., Martin-Marcos, P., Markus, M.A., Akabayov, B., Milbradt, A.G., Luna, L.E., Seo, H.C. et al. (2012) The C-terminal domain of eukaryotic initiation factor 5 promotes start codon recognition by its dynamic interplay with eIF1 and eIF2-. Cell Rep., 1, 689-702.
49. Asano, K. (2014) Why is start codon selection so precise in eukaryotes? Translation, 2, e28387.
50. Luna, R.E., Arthanari, H., Hiraishi, H., Akabayov, B., Tang, L., Cox, C., Markus, M.A., Luna, L.E., Ikeda, Y., Watanabe, R. et al. (2013) The interaction between eukaryotic initiation factor 1A and eIF5 retains eIF1 within scanning preinitiation complexes. Biochemistry, 52, 9510-9518.
51. Loughran, G., Sachs, M.S., Atkins, J.F. and Ivanov, I.P. (2012) Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5. Nucleic Acids Res., 40, 2898-2906.