-
1
-
-
84860641102
-
The ADAMs family of proteases: new biomarkers and therapeutic targets for cancer?
-
M.J. Duffy, M. Mullooly, N. O'Donovan, S. Sukor, J. Crown, A. Pierce, and P.M. McGowan The ADAMs family of proteases: new biomarkers and therapeutic targets for cancer? Clin. Proteom. 8 2011 9
-
(2011)
Clin. Proteom.
, vol.8
, pp. 9
-
-
Duffy, M.J.1
Mullooly, M.2
O'Donovan, N.3
Sukor, S.4
Crown, J.5
Pierce, A.6
McGowan, P.M.7
-
2
-
-
37249079599
-
The ADAM10 prodomain is a specific inhibitor of ADAM10 proteolytic activity and inhibits cellular shedding events
-
M.L. Moss, M. Bomar, Q. Liu, H. Sage, P. Dempsey, P.M. Lenhart, P.A. Gillispie, A. Stoeck, D. Wildeboer, J.W. Bartsch, R. Palmisano, and P. Zhou The ADAM10 prodomain is a specific inhibitor of ADAM10 proteolytic activity and inhibits cellular shedding events J. Biol. Chem. 282 2007 35712 35721
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 35712-35721
-
-
Moss, M.L.1
Bomar, M.2
Liu, Q.3
Sage, H.4
Dempsey, P.5
Lenhart, P.M.6
Gillispie, P.A.7
Stoeck, A.8
Wildeboer, D.9
Bartsch, J.W.10
Palmisano, R.11
Zhou, P.12
-
3
-
-
34249295619
-
Disulphideisomerase-enabled shedding of tumor-associated NKG2D ligands
-
B.K. Kaiser, D. Yim, I.T. Chow, S. Gonzales, Z. Dai, H.H. Mann, R.K. Strong, V. Groh, and T. Spies Disulphideisomerase-enabled shedding of tumor-associated NKG2D ligands Nature 447 2007 482 487
-
(2007)
Nature
, vol.447
, pp. 482-487
-
-
Kaiser, B.K.1
Yim, D.2
Chow, I.T.3
Gonzales, S.4
Dai, Z.5
Mann, H.H.6
Strong, R.K.7
Groh, V.8
Spies, T.9
-
4
-
-
51049103630
-
Tumor-associated MICA is shed by ADAM proteases
-
I. Waldhauer, D. Goehlsdorf, F. Gieseke, T. Weinschenk, M. Wittenbrink, A. Ludwig, S. Stevanovic, H.G. Rammensee, and A. Steinle Tumor-associated MICA is shed by ADAM proteases Cancer Res. 68 2008 6368 6376
-
(2008)
Cancer Res.
, vol.68
, pp. 6368-6376
-
-
Waldhauer, I.1
Goehlsdorf, D.2
Gieseke, F.3
Weinschenk, T.4
Wittenbrink, M.5
Ludwig, A.6
Stevanovic, S.7
Rammensee, H.G.8
Steinle, A.9
-
5
-
-
77950549978
-
Differential mechanisms of shedding of the glycosylphosphatidylinositol (GPI)-anchored NKG2D ligands
-
L. Fernandez-Messina, O. Ashiiru, P. Boutet, S. Agüera-González, J.N. Skepper, H.T. Reyburn, and M. Valés-Gómez Differential mechanisms of shedding of the glycosylphosphatidylinositol (GPI)-anchored NKG2D ligands J. Biol. Chem. 285 2010 8543 8551
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 8543-8551
-
-
Fernandez-Messina, L.1
Ashiiru, O.2
Boutet, P.3
Agüera-González, S.4
Skepper, J.N.5
Reyburn, H.T.6
Valés-Gómez, M.7
-
6
-
-
10844263473
-
Vδ1 T lymphocytes from B-CLL patients recognize ULBP3 expressed on leukemic B cells and up-regulated by trans-retinoic acid
-
A. Poggi, C. Venturino, S. Catellani, M. Clavio, M. Miglino, M. Gobbi, A. Steinle, P. Ghia, S. Stella, F. Caligaris-Cappio, and M.R. Zocchi Vδ1 T lymphocytes from B-CLL patients recognize ULBP3 expressed on leukemic B cells and up-regulated by trans-retinoic acid Cancer Res. 64 2004 9172 9179
-
(2004)
Cancer Res.
, vol.64
, pp. 9172-9179
-
-
Poggi, A.1
Venturino, C.2
Catellani, S.3
Clavio, M.4
Miglino, M.5
Gobbi, M.6
Steinle, A.7
Ghia, P.8
Stella, S.9
Caligaris-Cappio, F.10
Zocchi, M.R.11
-
7
-
-
33847392610
-
Expansion of Vdelta1 T lymphocytes producing IL-4 in low-grade non-Hodgkin lymphomas ex pressing UL-16-binding proteins
-
S. Catellani, A. Poggi, A. Bruzzone, P. Dadati, J.L. Ravetti, M. Gobbi, and M.R. Zocchi Expansion of Vdelta1 T lymphocytes producing IL-4 in low-grade non-Hodgkin lymphomas ex pressing UL-16-binding proteins Blood 109 2007 2078 2085
-
(2007)
Blood
, vol.109
, pp. 2078-2085
-
-
Catellani, S.1
Poggi, A.2
Bruzzone, A.3
Dadati, P.4
Ravetti, J.L.5
Gobbi, M.6
Zocchi, M.R.7
-
8
-
-
84856836302
-
High ERp5/ADAM10 expression in lymph node microenvironment and impaired NKG2D-ligands recognition in Hodgkin lymphomas
-
M.R. Zocchi, S. Catellani, P. Canevali, S. Tavella, A. Garuti, B. Villaggio, A. Zunino, M. Gobbi, G. Fraternali-Orcioni, A. Kunkl, J.L. Ravetti, S. Boero, A. Musso, and A. Poggi High ERp5/ADAM10 expression in lymph node microenvironment and impaired NKG2D-ligands recognition in Hodgkin lymphomas Blood 119 2012 1479 1489
-
(2012)
Blood
, vol.119
, pp. 1479-1489
-
-
Zocchi, M.R.1
Catellani, S.2
Canevali, P.3
Tavella, S.4
Garuti, A.5
Villaggio, B.6
Zunino, A.7
Gobbi, M.8
Fraternali-Orcioni, G.9
Kunkl, A.10
Ravetti, J.L.11
Boero, S.12
Musso, A.13
Poggi, A.14
-
9
-
-
68649104004
-
Gammadelta T cells and the lymphoid stress-surveillance response
-
A.C. Hayday Gammadelta T cells and the lymphoid stress-surveillance response Immunity 31 2009 184 196
-
(2009)
Immunity
, vol.31
, pp. 184-196
-
-
Hayday, A.C.1
-
10
-
-
39549084084
-
MIC-A antibodies and shedding are associated with the progression of multiple myeloma
-
M. Jinushi, M. Vanneman, N.C. Munshi, Y.T. Tai, R.H. Prabhala, J. Ritz, D. Neuberg, K.C. Anderson, D.R. Carrasco, and G. Dranoff MIC-A antibodies and shedding are associated with the progression of multiple myeloma Proc. Natl. Acad. Sci. U. S. A. 105 2008 1285 1290
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 1285-1290
-
-
Jinushi, M.1
Vanneman, M.2
Munshi, N.C.3
Tai, Y.T.4
Prabhala, R.H.5
Ritz, J.6
Neuberg, D.7
Anderson, K.C.8
Carrasco, D.R.9
Dranoff, G.10
-
11
-
-
63649105591
-
The good, the bad and the ugly substrates for ADAM10 and ADAM17 in brain pathology, inflammation and cancer
-
J. Pruessmeyer, and A. Ludwig The good, the bad and the ugly substrates for ADAM10 and ADAM17 in brain pathology, inflammation and cancer Semin. Cell Dev. Biol. 20 2009 164 174
-
(2009)
Semin. Cell Dev. Biol.
, vol.20
, pp. 164-174
-
-
Pruessmeyer, J.1
Ludwig, A.2
-
12
-
-
56749133149
-
The ADAMs: signalling scissors in the tumour microenvironment
-
G. Murphy The ADAMs: signalling scissors in the tumour microenvironment Nat. Rev. Cancer 8 2008 929 941
-
(2008)
Nat. Rev. Cancer
, vol.8
, pp. 929-941
-
-
Murphy, G.1
-
14
-
-
79955470772
-
The "a Disintegrin and Metalloproteases" ADAM10 and ADAM17: novel drug targets with therapeutic potential?
-
P. Saftig, and K. Reiss The "A Disintegrin And Metalloproteases" ADAM10 and ADAM17: novel drug targets with therapeutic potential? Eur. J. Cell Biol. 90 2011 527 535
-
(2011)
Eur. J. Cell Biol.
, vol.90
, pp. 527-535
-
-
Saftig, P.1
Reiss, K.2
-
15
-
-
71049151580
-
Hydroxamates: relationships between structure and plasma stability
-
M. Flipo, J. Charton, A. Hocine, S. Dassonneville, B. Deprez, and R. Deprez-Poulain Hydroxamates: relationships between structure and plasma stability J. Med. Chem. 52 2009 6790 6802
-
(2009)
J. Med. Chem.
, vol.52
, pp. 6790-6802
-
-
Flipo, M.1
Charton, J.2
Hocine, A.3
Dassonneville, S.4
Deprez, B.5
Deprez-Poulain, R.6
-
16
-
-
84886506966
-
Investigating the selectivity of metalloenzyme inhibitors
-
J.A. Day, and S.M. Cohen Investigating the selectivity of metalloenzyme inhibitors J. Med. Chem. 56 2013 7997 8007
-
(2013)
J. Med. Chem.
, vol.56
, pp. 7997-8007
-
-
Day, J.A.1
Cohen, S.M.2
-
18
-
-
33745802997
-
Selective inhibition of ADAM metalloproteases blocks HER-2 extracellular domain (ECD) cleavage and potentiates the anti-tumor effects of trastuzumab
-
X. Liu, J.S. Fridman, Q. Wang, E. Caulder, G. Yang, M. Covington, C. Liu, C. Marando, J. Zhuo, Y. Li, W. Yao, K. Vaddi, R.C. Newton, P.A. Scherle, and S.M. Friedman Selective inhibition of ADAM metalloproteases blocks HER-2 extracellular domain (ECD) cleavage and potentiates the anti-tumor effects of trastuzumab Cancer Biol. Ther. 5 2006 648 656
-
(2006)
Cancer Biol. Ther.
, vol.5
, pp. 648-656
-
-
Liu, X.1
Fridman, J.S.2
Wang, Q.3
Caulder, E.4
Yang, G.5
Covington, M.6
Liu, C.7
Marando, C.8
Zhuo, J.9
Li, Y.10
Yao, W.11
Vaddi, K.12
Newton, R.C.13
Scherle, P.A.14
Friedman, S.M.15
-
19
-
-
34250167944
-
Selective inhibition of ADAM metalloproteases as a novel approach for modulating ErbB pathways in cancer
-
J.S. Fridman, E. Caulder, M. Hansbury, X. Liu, G. Yang, Q. Wang, Y. Lo, B.B. Zhou, M. Pan, S.M. Thomas, J.R. Grandis, J. Zhuo, W. Yao, R.C. Newton, S.M. Friedman, P.A. Scherle, and K. Vaddi Selective inhibition of ADAM metalloproteases as a novel approach for modulating ErbB pathways in cancer Clin. Cancer Res. 13 2007 1892 1902
-
(2007)
Clin. Cancer Res.
, vol.13
, pp. 1892-1902
-
-
Fridman, J.S.1
Caulder, E.2
Hansbury, M.3
Liu, X.4
Yang, G.5
Wang, Q.6
Lo, Y.7
Zhou, B.B.8
Pan, M.9
Thomas, S.M.10
Grandis, J.R.11
Zhuo, J.12
Yao, W.13
Newton, R.C.14
Friedman, S.M.15
Scherle, P.A.16
Vaddi, K.17
-
20
-
-
84957538073
-
Formamides as therapeutic agents
-
US Pat. Appl.
-
R.C. Andrews, M.W. Andersen, D.J. Cowan, D.N. Deaton, S.H. Dickerson, D.H. Drewry, M.D. Gaul, M.J. Luzzio, M.H. Rabinowitz, Formamides as therapeutic agents, US Pat. Appl. US 6172064, 2001.
-
(2001)
-
-
Andrews, R.C.1
Andersen, M.W.2
Cowan, D.J.3
Deaton, D.N.4
Dickerson, S.H.5
Drewry, D.H.6
Gaul, M.D.7
Luzzio, M.J.8
Rabinowitz, M.H.9
-
21
-
-
0042237924
-
The disintegrin-like metalloproteinase ADAM10 is involved in constitutive cleavage of CX3CL1 (fractalkine) and regulates CX3CL1-mediated cell-cell adhesion
-
C. Hundhausen, D. Misztela, T.A. Berkhout, N. Broadway, P. Saftig, K. Reiss, D. Hartmann, F. Fahrenholz, R. Postina, V. Matthews, K.J. Kallen, S. Rose-John, and A. Ludwig The disintegrin-like metalloproteinase ADAM10 is involved in constitutive cleavage of CX3CL1 (fractalkine) and regulates CX3CL1-mediated cell-cell adhesion Blood 102 2003 1186 1195
-
(2003)
Blood
, vol.102
, pp. 1186-1195
-
-
Hundhausen, C.1
Misztela, D.2
Berkhout, T.A.3
Broadway, N.4
Saftig, P.5
Reiss, K.6
Hartmann, D.7
Fahrenholz, F.8
Postina, R.9
Matthews, V.10
Kallen, K.J.11
Rose-John, S.12
Ludwig, A.13
-
22
-
-
15244349837
-
Metalloproteinase inhibitors for the disintegrin-likemetalloproteinases ADAM10 and ADAM17 that differentially block constitutive and phorbol esterinducible shedding of cell surface molecules
-
A. Ludwig, C. Hundhausen, M.H. Lambert, N. Broadway, R.C. Andrews, D.M. Bickett, M.A. Leesnitzer, and J.D. Becherer Metalloproteinase inhibitors for the disintegrin-likemetalloproteinases ADAM10 and ADAM17 that differentially block constitutive and phorbol esterinducible shedding of cell surface molecules Comb. Chem. High Throughput Screen 8 2005 161 171
-
(2005)
Comb. Chem. High Throughput Screen
, vol.8
, pp. 161-171
-
-
Ludwig, A.1
Hundhausen, C.2
Lambert, M.H.3
Broadway, N.4
Andrews, R.C.5
Bickett, D.M.6
Leesnitzer, M.A.7
Becherer, J.D.8
-
23
-
-
84886567237
-
Selective arylsulfonamide inhibitors of ADAM-17: hit optimization and activity in ovarian cancer cell models
-
E. Nuti, F. Casalini, S. Santamaria, M. Fabbi, G. Carbotti, S. Ferrini, L. Marinelli, V. La Pietra, E. Novellino, C. Camodeca, E. Orlandini, S. Nencetti, and A. Rossello Selective arylsulfonamide inhibitors of ADAM-17: hit optimization and activity in ovarian cancer cell models J. Med. Chem. 56 2013 8089 8103
-
(2013)
J. Med. Chem.
, vol.56
, pp. 8089-8103
-
-
Nuti, E.1
Casalini, F.2
Santamaria, S.3
Fabbi, M.4
Carbotti, G.5
Ferrini, S.6
Marinelli, L.7
La Pietra, V.8
Novellino, E.9
Camodeca, C.10
Orlandini, E.11
Nencetti, S.12
Rossello, A.13
-
24
-
-
84875594480
-
Activated leukocyte cell adhesion molecule soluble form: a potential biomarker of epithelial ovarian cancer is increased in type II tumors
-
G. Carbotti, A.M. Orengo, D. Mezzanzanica, M. Bagnoli, A. Brizzolara, L. Emionite, A. Puppo, M.G. Centurioni, M. Bruzzone, P. Marroni, A. Rossello, S. Canevari, S. Ferrini, and M. Fabbi Activated leukocyte cell adhesion molecule soluble form: a potential biomarker of epithelial ovarian cancer is increased in type II tumors Int. J. Cancer 132 2013 2597 2605
-
(2013)
Int. J. Cancer
, vol.132
, pp. 2597-2605
-
-
Carbotti, G.1
Orengo, A.M.2
Mezzanzanica, D.3
Bagnoli, M.4
Brizzolara, A.5
Emionite, L.6
Puppo, A.7
Centurioni, M.G.8
Bruzzone, M.9
Marroni, P.10
Rossello, A.11
Canevari, S.12
Ferrini, S.13
Fabbi, M.14
-
25
-
-
84957572025
-
Hydroxamic acid derivatives as metalloprotease inhibitors
-
US Pat. Appl.
-
D.M. Burns, W. Yao, C. He, Hydroxamic acid derivatives as metalloprotease inhibitors, US Pat. Appl. US 0250789, 2005.
-
(2005)
-
-
Burns, D.M.1
Yao, W.2
He, C.3
-
26
-
-
38149074027
-
Conversion of an MMP-potent scaffold to an MMP-selective HER-2 sheddase inhibitor via scaffold hybridization and subtle P1′ permutations
-
D.M. Burns, C. He, Y. Li, P. Scherle, X. Liu, C.A. Marando, M.B. Covington, G. Yang, M. Pan, S. Turner, J.S. Fridman, G. Hollis, K. Vaddi, S. Yeleswaram, R. Newton, S. Friedman, B. Metcalf, and W. Yao Conversion of an MMP-potent scaffold to an MMP-selective HER-2 sheddase inhibitor via scaffold hybridization and subtle P1′ permutations Bioorg. Med. Chem. Lett. 18 2008 560 564
-
(2008)
Bioorg. Med. Chem. Lett.
, vol.18
, pp. 560-564
-
-
Burns, D.M.1
He, C.2
Li, Y.3
Scherle, P.4
Liu, X.5
Marando, C.A.6
Covington, M.B.7
Yang, G.8
Pan, M.9
Turner, S.10
Fridman, J.S.11
Hollis, G.12
Vaddi, K.13
Yeleswaram, S.14
Newton, R.15
Friedman, S.16
Metcalf, B.17
Yao, W.18
-
27
-
-
0033810049
-
Modeling of loops in protein structures
-
A. Fiser, R.K. Do, and A. Sali Modeling of loops in protein structures Protein Sci. 9 2000 1753 1773
-
(2000)
Protein Sci.
, vol.9
, pp. 1753-1773
-
-
Fiser, A.1
Do, R.K.2
Sali, A.3
-
29
-
-
2142828483
-
Characterization of Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2, a fluorogenic substrate with increased specificity constants for collagenases and tumor necrosis factor converting enzyme
-
U. Neumann, H. Kubota, K. Frei, V. Ganu, and D. Leppert Characterization of Mca-Lys-Pro-Leu-Gly-Leu-Dpa-Ala-Arg-NH2, a fluorogenic substrate with increased specificity constants for collagenases and tumor necrosis factor converting enzyme Anal. Biochem. 328 2004 166 173
-
(2004)
Anal. Biochem.
, vol.328
, pp. 166-173
-
-
Neumann, U.1
Kubota, H.2
Frei, K.3
Ganu, V.4
Leppert, D.5
-
30
-
-
77956763130
-
Orally active MMP-1 sparing α-tetrahydropyranyl and α-piperidinyl sulfone matrix metalloproteinase (MMP) inhibitors with efficacy in cancer, arthritis, and cardiovascular disease
-
D.P. Becker, T.E. Barta, L.J. Bedell, T.L. Boehm, B.R. Bond, J. Carroll, C.P. Carron, G.A. Decrescenzo, A.M. Easton, J.N. Freskos, C.L. Funckes-Shippy, M. Heron, S. Hockerman, C.P. Howard, J.R. Kiefer, M.H. Li, K.J. Mathis, J.J. McDonald, P.P. Mehta, G.E. Munie, T. Sunyer, C.A. Swearingen, C.I. Villamil, D. Welsch, J.M. Williams, Y. Yu, and J. Yao Orally active MMP-1 sparing α-tetrahydropyranyl and α-piperidinyl sulfone matrix metalloproteinase (MMP) inhibitors with efficacy in cancer, arthritis, and cardiovascular disease J. Med. Chem. 53 2010 6653 6680
-
(2010)
J. Med. Chem.
, vol.53
, pp. 6653-6680
-
-
Becker, D.P.1
Barta, T.E.2
Bedell, L.J.3
Boehm, T.L.4
Bond, B.R.5
Carroll, J.6
Carron, C.P.7
Decrescenzo, G.A.8
Easton, A.M.9
Freskos, J.N.10
Funckes-Shippy, C.L.11
Heron, M.12
Hockerman, S.13
Howard, C.P.14
Kiefer, J.R.15
Li, M.H.16
Mathis, K.J.17
McDonald, J.J.18
Mehta, P.P.19
Munie, G.E.20
Sunyer, T.21
Swearingen, C.A.22
Villamil, C.I.23
Welsch, D.24
Williams, J.M.25
Yu, Y.26
Yao, J.27
more..
-
31
-
-
84894082231
-
Monitoring and Inhibiting MT1-MMP during cancer initiation and progression
-
S. Pahwa, M.J. Stawikowski, and G.B. Fields Monitoring and Inhibiting MT1-MMP during cancer initiation and progression Cancers 6 2014 416 435
-
(2014)
Cancers
, vol.6
, pp. 416-435
-
-
Pahwa, S.1
Stawikowski, M.J.2
Fields, G.B.3
-
32
-
-
84878159884
-
Crystallization of bi-functional ligand protein complexes
-
C. Antoni, L. Vera, L. Devel, M.P. Catalani, B. Czarny, E. Cassar-Lajeunesse, E. Nuti, A. Rossello, V. Dive, and E.A. Stura Crystallization of bi-functional ligand protein complexes J. Struct. Biol. 182 2013 246 254
-
(2013)
J. Struct. Biol.
, vol.182
, pp. 246-254
-
-
Antoni, C.1
Vera, L.2
Devel, L.3
Catalani, M.P.4
Czarny, B.5
Cassar-Lajeunesse, E.6
Nuti, E.7
Rossello, A.8
Dive, V.9
Stura, E.A.10
-
33
-
-
84916215110
-
Expression of tumour necrosis factor-α and its receptors in Hodgkin lymphoma
-
S. Nakayama, T. Yokote, M. Tsuji, T. Akioka, T. Miyoshi, Y. Hirata, N. Hiraoka, K. Iwaki, A. Takayama, U. Nishiwaki, Y. Masuda, and T. Hanafusa Expression of tumour necrosis factor-α and its receptors in Hodgkin lymphoma Br. J. Haematol. 167 2014 574 577
-
(2014)
Br. J. Haematol.
, vol.167
, pp. 574-577
-
-
Nakayama, S.1
Yokote, T.2
Tsuji, M.3
Akioka, T.4
Miyoshi, T.5
Hirata, Y.6
Hiraoka, N.7
Iwaki, K.8
Takayama, A.9
Nishiwaki, U.10
Masuda, Y.11
Hanafusa, T.12
-
34
-
-
0043122944
-
ExPASy: the proteomics server for in-depth protein knowledge and analysis
-
E. Gasteiger, A. Gattiker, C. Hoogland, I. Ivanyi, R.D. Appel, and A. Bairoch ExPASy: the proteomics server for in-depth protein knowledge and analysis Nucleic Acids Res. 31 2003 3784 3788
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3784-3788
-
-
Gasteiger, E.1
Gattiker, A.2
Hoogland, C.3
Ivanyi, I.4
Appel, R.D.5
Bairoch, A.6
-
35
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
36
-
-
33845646703
-
Identification of potent and selective TACE inhibitors via the S1 pocket
-
J.S. Condon, D. Joseph-McCarthy, J.L. Levin, H.G. Lombart, F.E. Lovering, L. Sun, W. Wang, W. Xu, and Y. Zhang Identification of potent and selective TACE inhibitors via the S1 pocket Bioorg. Med. Chem. Lett. 17 2007 34 39
-
(2007)
Bioorg. Med. Chem. Lett.
, vol.17
, pp. 34-39
-
-
Condon, J.S.1
Joseph-McCarthy, D.2
Levin, J.L.3
Lombart, H.G.4
Lovering, F.E.5
Sun, L.6
Wang, W.7
Xu, W.8
Zhang, Y.9
-
37
-
-
0033954256
-
The protein data bank
-
H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, and P.E. Bourne The protein data bank Nucleic Acids Res. 28 2000 235 242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
38
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
39
-
-
84862614975
-
-
University of California San Francisco
-
D.A. Case, T.A. Darden, T.E. Cheatham III, C.L. Simmerling, J. Wang, R.E. Duke, R. Luo, R.C. Walker, W. Zhang, K.M. Merz, B. Roberts, S. Hayik, A. Roitberg, G. Seabra, J. Swails, A.W. Götz, I. Kolossváry, K.F. Wong, F. Paesani, J. Vanicek, R.M. Wolf, J. Liu, X. Wu, S.R. Brozell, T. Steinbrecher, H. Gohlke, Q. Cai, X. Ye, J. Wang, M.-J. Hsieh, G. Cui, D.R. Roe, D.H. Mathews, M.G. Seetin, R. Salomon-Ferrer, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A. Kovalenko, and P.A. Kollman AMBER 12 2012 University of California San Francisco
-
(2012)
AMBER 12
-
-
Case, D.A.1
Darden, T.A.2
Cheatham, T.E.3
Simmerling, C.L.4
Wang, J.5
Duke, R.E.6
Luo, R.7
Walker, R.C.8
Zhang, W.9
Merz, K.M.10
Roberts, B.11
Hayik, S.12
Roitberg, A.13
Seabra, G.14
Swails, J.15
Götz, A.W.16
Kolossváry, I.17
Wong, K.F.18
Paesani, F.19
Vanicek, J.20
Wolf, R.M.21
Liu, J.22
Wu, X.23
Brozell, S.R.24
Steinbrecher, T.25
Gohlke, H.26
Cai, Q.27
Ye, X.28
Wang, J.29
Hsieh, M.-J.30
Cui, G.31
Roe, D.R.32
Mathews, D.H.33
Seetin, M.G.34
Salomon-Ferrer, R.35
Sagui, C.36
Babin, V.37
Luchko, T.38
Gusarov, S.39
Kovalenko, A.40
Kollman, P.A.41
more..
-
40
-
-
33645961739
-
A smooth particle mesh Ewald method
-
U. Essmann, L. Perera, M.L. Berkowitz, T. Darden, H. Lee, and L.G. Pedersen A smooth particle mesh Ewald method J. Chem. Phys. 103 1995 8577 8592
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8592
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
41
-
-
77956319507
-
-
Schrödinger Inc Portland, OR
-
Maestro, Version 9.0 2009 Schrödinger Inc Portland, OR
-
(2009)
Maestro, Version 9.0
-
-
-
42
-
-
77950577346
-
-
Schrödinger Inc Portland, OR
-
Macromodel, Version 9.7 2009 Schrödinger Inc Portland, OR
-
(2009)
Macromodel, Version 9.7
-
-
-
43
-
-
0041919542
-
Improved protein-ligand docking using GOLD
-
M.L. Verdonk, J.C. Cole, M.J. Hartshorn, C.W. Murray, and R.D. Taylor Improved protein-ligand docking using GOLD Proteins 52 2003 609 623
-
(2003)
Proteins
, vol.52
, pp. 609-623
-
-
Verdonk, M.L.1
Cole, J.C.2
Hartshorn, M.J.3
Murray, C.W.4
Taylor, R.D.5
-
44
-
-
0007638285
-
Calculations of molecules, clusters, and solids with a simplified LCAO-DFT-LDA scheme
-
G. Seifert, D. Porezag, and T. Frauenheim Calculations of molecules, clusters, and solids with a simplified LCAO-DFT-LDA scheme Int. J. Quantum Chem. 58 1996 185 192
-
(1996)
Int. J. Quantum Chem.
, vol.58
, pp. 185-192
-
-
Seifert, G.1
Porezag, D.2
Frauenheim, T.3
-
45
-
-
84877013874
-
Screening using polymorphs for the crystallization of protein-ligand complexes
-
L. Vera, C. Antoni, L. Devel, B. Czarny, E. Cassar-Lajeunesse, A. Rossello, V. Dive, and E.A. Stura Screening using polymorphs for the crystallization of protein-ligand complexes Cryst. Growth Des. 13 2013 1878 1888
-
(2013)
Cryst. Growth Des.
, vol.13
, pp. 1878-1888
-
-
Vera, L.1
Antoni, C.2
Devel, L.3
Czarny, B.4
Cassar-Lajeunesse, E.5
Rossello, A.6
Dive, V.7
Stura, E.A.8
-
46
-
-
0026117693
-
Applications of the streak seeding technique in protein crystallization
-
E.A. Stura, and I.A. Wilson Applications of the streak seeding technique in protein crystallization J. Cryst. Growth 110 1991 270 282
-
(1991)
J. Cryst. Growth
, vol.110
, pp. 270-282
-
-
Stura, E.A.1
Wilson, I.A.2
-
47
-
-
84893676573
-
Strategies for protein cryocrystallography
-
L. Vera, and E.A. Stura Strategies for protein cryocrystallography Cryst. Growth Des. 14 2014 427 435
-
(2014)
Cryst. Growth Des.
, vol.14
, pp. 427-435
-
-
Vera, L.1
Stura, E.A.2
-
48
-
-
84947427590
-
Multicomponent mixtures for cryoprotection and ligand solubilization
-
L. Ciccone, L. Vera, L. Tepshi, L. Rosalia, A. Rossello, and E.A. Stura Multicomponent mixtures for cryoprotection and ligand solubilization Biotechnol. Rep. 7 2015 120 127
-
(2015)
Biotechnol. Rep.
, vol.7
, pp. 120-127
-
-
Ciccone, L.1
Vera, L.2
Tepshi, L.3
Rosalia, L.4
Rossello, A.5
Stura, E.A.6
-
49
-
-
84876223525
-
PROXIMA 2A - a new fully tunable micro-focus beamline for macromolecular crystallography
-
D. Duran, S. Le Couster, K. Desjardins, A. Delmotte, G. Fox, R. Meijers, T. Moreno, M. Savko, W. Shepard, PROXIMA 2A - a new fully tunable micro-focus beamline for macromolecular crystallography, J. Phys. Conf. Ser., 425, 012005.
-
J. Phys. Conf. Ser.
, vol.425
, pp. 012005
-
-
Duran, D.1
Le Couster, S.2
Desjardins, K.3
Delmotte, A.4
Fox, G.5
Meijers, R.6
Moreno, T.7
Savko, M.8
Shepard, W.9
-
51
-
-
0030915704
-
Improved R-factors for diffraction data analysis in macromolecular crystallography
-
K. Diederichs, and P.A. Karplus Improved R-factors for diffraction data analysis in macromolecular crystallography Nat. Struct. Biol. 4 1997 269 275
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 269-275
-
-
Diederichs, K.1
Karplus, P.A.2
-
53
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
G.N. Murshudov, P. Skubák, A.A. Lebedev, N.S. Pannu, R.A. Steiner, R.A. Nicholls, M.D. Winn, F. Long, and A.A. Vagin REFMAC5 for the refinement of macromolecular crystal structures Acta Crystallogr. D Biol. Crystallogr. 67 2011 355 367
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubák, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
54
-
-
79953737180
-
Overview of the CCP4 suite and current developments
-
M.D. Winn, C.C. Ballard, K.D. Cowtan, E.J. Dodson, P. Emsley, P.R. Evans, R.M. Keegan, E.B. Krissinel, A.G.W. Leslie, A. McCoy, S.J. McNicholas, G.N. Murshudov, N.S. Pannu, E.A. Potterton, H.R. Powell, R.J. Read, A. Vagin, and K.S. Wilson Overview of the CCP4 suite and current developments Acta Crystallogr. D Biol. Crystallogr. 67 2011 235 242
-
(2011)
Acta Crystallogr. D Biol. Crystallogr.
, vol.67
, pp. 235-242
-
-
Winn, M.D.1
Ballard, C.C.2
Cowtan, K.D.3
Dodson, E.J.4
Emsley, P.5
Evans, P.R.6
Keegan, R.M.7
Krissinel, E.B.8
Leslie, A.G.W.9
McCoy, A.10
McNicholas, S.J.11
Murshudov, G.N.12
Pannu, N.S.13
Potterton, E.A.14
Powell, H.R.15
Read, R.J.16
Vagin, A.17
Wilson, K.S.18
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