Selective silicate-directed motility in diatoms

Nature Communications

Volumn 7, Issue , 2016, Pages

  Bondoc, Karen Grace V ^a,b   Heuschele, Jan ^c,d   Gillard, Jeroen ^e,f   Vyverman, Wim ^e   Pohnert, Georg ^a,b  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^b MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^d LUND UNIVERSITY   (Sweden)

^e GHENT UNIVERSITY   (Belgium)

^f CALIFORNIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALUMINUM OXIDE; SILICATE; SILICIC ACID;

ALGA; BENTHIC FAUNA; BIOFILM; CELLS AND CELL COMPONENTS; COMMUNITY COMPOSITION; DIATOM; GLOBAL PERSPECTIVE; INLAND SEA; MOTILITY; PATCH DYNAMICS; PRIMARY PRODUCTION; SILICIC ACID;

ARTICLE; BEHAVIOR; BIOGEOCHEMICAL CYCLING; CELL MOTILITY; CELL MOTION; CELL WALL; CHEMOTAXIS; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DIATOM; PATCH DYNAMICS; SEA; SPECIES COMPOSITION; VELOCITY;

ALGAE; BACILLARIOPHYTA; NITZSCHIA ALBA;

EID: 84957537290     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms10540     Document Type: Article

References (42)

1. Field, C. B. Primary production of the biosphere: integrating terrestrial and oceanic components. Science 281, 237-240 (1998).
2. Kroger, N., Lorenz, S., Brunner, E. & Sumper, M. Self-assembly of highly phosphorylated silaffins and their function in biosilica morphogenesis. Science 298, 584-586 (2002).
3. Tréguer, P. J. & De La Rocha, C. L. The world ocean silica cycle. Annu. Rev. Mar. Sci. 5, 477-501 (2013).
4. Yool, A. & Tyrrell, T. Role of diatoms in regulating the ocean's silicon cycle. Global Biogeochem. Cycles 17, 1103 (2003).
5. Martin-Jezequel, V., Hildebrand, M. & Brzezinski, M. A. Silicon metabolism in diatoms: implications for growth. J. Phycol. 36, 821-840 (2000).
6. Leynaert, A., Longphuirt, S. N., Claquin, P., Chauvaud, L. & Ragueneau, O. No limit? The multiphasic uptake of silicic acid by benthic diatoms. Limnol. Oceanogr. 54, 571-576 (2009).
7. Ziervogel, K. & Forster, S. Do benthic diatoms influence erosion thresholds of coastal subtidal sediments? J. Sea Res. 55, 43-53 (2006).
8. Sigmon, D. E. & Cahoon, L. B. Comparative effects of benthic microalgae and phytoplankton on dissolved silica fluxes. Aquat. Microb. Ecol. 13, 275-284 (1997).
9. Bowler, C. et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456, 239-244 (2008).
10. Cahoon, L. B. in Oceanography and Marine Biology: An Annual Review Vol. 37 (eds Ansell, A. D., Gibson, R. N. & Barnes, M.) 47-86 (University College London Press, 1999).
11. Consalvey, M., Paterson, D. M. & Underwood, G. J. C. The ups and downs of life in a benthic biofilm: migration of benthic diatoms. Diatom Res. 19, 181-202 (2004).
12. Van Colen, C., Underwood, G. J. C., Serôdio, J. & Paterson, D. M. Ecology of intertidal microbial biofilms: mechanisms, patterns and future research needs. J. Sea Res. 92, 2-5 (2014).
13. Agogué, H., Mallet, C., Orvain, F., De Crignis, M., Mornet, F. & Dupuy, C. Bacterial dynamics in a microphytobenthic biofilm: a tidal mesocosm approach. J. Sea Res. 92, 36-45 (2014).
14. Molino, P. J. & Wetherbee, R. The biology of biofouling diatoms and their role in the development of microbial slimes. Biofouling 24, 365-379 (2008).
15. Wang, J., Cao, S., Du, C. & Chen, D. Underwater locomotion strategy by a benthic penate diatom Navicula sp. Protoplasm 250, 1203-1212 (2013).
16. Amsler, C. D. & Iken, K. B. in Marine Chemical Ecology (eds McClintock, J. B. & Baker, B. J.) 413-430 (CRC, 2001).
17. Hutz, A., Schubert, K. & Overmann, J. Thalassospira sp isolated from the oligotrophic eastern mediterranean sea exhibits chemotaxis toward inorganic phosphate during starvation. Appl. Environ. Microbiol. 77, 4412-4421 (2011).
18. Barbara, G. M. & Mitchell, J. G. Marine bacterial organisation around point-like sources of amino acids. FEMS Microbiol. Ecol. 43, 99-109 (2003).
19. Witkowski, A., Brehm, U., Palinska, K. A. & Rhiel, E. Swarm-like migratory behaviour in the laboratory of a pennate diatom isolated from North Sea sediments. Diatom Res. 27, 95-100 (2012).
20. Gillard, J. et al. Metabolomics enables the structure elucidation of a diatom sex pheromone. Angew. Chem. Int. Ed. 52, 854-857 (2013).
21. Visser, A. W. & Kiorboe, T. Plankton motility patterns and encounter rates. Oecologia 148, 538-546 (2006).
22. Froelich, P. N. & Andreae, M. O. The marine geochemistry of germanium - ekasilicon. Science 213, 205-207 (1981).
23. Azam, F., Hemmingsen, B. B. & Voleani, B. E. Germanium incorporation into the silica of diatom cell walls. Arch. Microbiol. 92, 11-20 (1973).
24. Sutton, J., Ellwood, M. J., Maher, W. A. & Croot, P. L. Oceanic distribution of inorganic germanium relative to silicon: germanium discrimination by diatoms. Global Biogeochem. Cycles 24, GB2017 (2010).
25. Pohnert, G. & Boland, W. The oxylipin chemistry of attraction and defense in brown algae and diatoms. Nat. Prod. Rep. 19, 108-122 (2002).
26. Ikegami, S., Imai, I., Kato, J. & Ohtake, H. Chemotaxis toward inorganic phosphate in the red alga Chattonella antiqua. J. Plankton Res. 17, 1587-1591 (1995).
27. Ermilova, E. V., Nikitin, M. M. & Fernandez, E. Chemotaxis to ammonium/methylammonium in Chlamydomonas reinhardtii: the role of transport systems for ammonium/methylammonium. Planta 226, 1323-1332 (2007).
28. Azam, F. Microbial control of oceanic carbon flux: the plot thickens. Science 280, 694-696 (1998).
29. Seymour, J. R., Marcos & Stocker, R. Resource patch formation and exploitation throughout the marine microbial food web. Am. Nat. 173, E15-E29 (2009).
30. Seymour, J. R., Simo, R., Ahmed, T. & Stocker, R. Chemoattraction to dimethylsulfoniopropionate throughout the marine microbial food web. Science 329, 342-345 (2010).
31. Stocker, R. Marine microbes see a sea of gradients. Science 338, 628-633 (2012).
32. Guillard, R. R. L. in Culture of Marine Invertebrate Animals. (eds Smith, L. H. & Chanley, M. H.) 26-60 (Plenum, 1975).
33. 2+ -antagonists on the movement and chemoorientation of male gametes of Ectocarpus siliculosus (Phaeophyceae). Bot. Acta 107, 451-460 (1994).
34. Strickland, J. D. H. & Parson, T. R. A Practical Handbook of Seawater Analysis 2nd edn (Fisheries Research Board of Canada, 1978).
35. Wollast, R. & Garrels, R. M. Diffusion coefficient of silica in seawater. Nat. Phys. Sci. 229, 94 (1971).
36. Blackburn, N., Fenchel, T. & Mitchell, J. Microscale nutrient patches in planktonic habitats shown by chemotactic bacteria. Science 282, 2254-2256 (1998).
37. Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat. Methods 9, 676-682 (2012).
38. Team, R. C. R Foundation for Statistical Compouting www.R-project.org/ (2013).
39. Eaton, A. D., Clesceri, L. S., Greenberg, A. E. & Franson, M. A. H. Standard Methods for the Examination of Water and Wastewater (American Public Healtch Association, 1998)).
40. Pinheiro, J., Bates, D., DebRoy, S., Sarkar, D. & Team, R. C. nlme: Linear and Nonlinear Mixed Effects Models. R package version 3.1-120 http://CRAN.R-project.org/package=nlme(2015).
41. Wood, S. N. Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models. J. R. Stat. Soc. Ser. B 73, 3-36 (2011).
42. Fenchel, T. Orientation in two dimensions: chemosensory motile behaviour of Euplotes vannus. Eur. J. Protistol. 40, 49-55 (2004).