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Volumn 11, Issue 2, 2016, Pages 228-237

Genome mining of astaxanthin biosynthetic genes from Sphingomonas sp. ATCC 55669 for heterologous overproduction in Escherichia coli

Author keywords

Astaxanthin; Biosynthesis; Complete genome; Discrete distribution; Sphingomonas

Indexed keywords

BIOCHEMISTRY; BIOSYNTHESIS; EFFICIENCY; ESCHERICHIA COLI; METABOLIC ENGINEERING; PIGMENTS;

EID: 84957436999     PISSN: 18606768     EISSN: 18607314     Source Type: Journal    
DOI: 10.1002/biot.201400827     Document Type: Article
Times cited : (55)

References (41)
  • 2
    • 1542315589 scopus 로고    scopus 로고
    • The biosynthesis and nutritional uses of carotenoids
    • Fraser, P. D., Bramley, P. M., The biosynthesis and nutritional uses of carotenoids. Prog. Lipid Res. 2004, 43, 228-265.
    • (2004) Prog. Lipid Res. , vol.43 , pp. 228-265
    • Fraser, P.D.1    Bramley, P.M.2
  • 3
    • 0022979732 scopus 로고
    • Micro-algae as sources of fine chemicals
    • Borowitzka, M., Micro-algae as sources of fine chemicals. Curr. Microbiol. 1986, 3, 372-375.
    • (1986) Curr. Microbiol. , vol.3 , pp. 372-375
    • Borowitzka, M.1
  • 5
    • 33748763871 scopus 로고    scopus 로고
    • Microbial production of food grade pigments
    • Dufosse, L., Microbial production of food grade pigments. Food Technol. Biotechnol. 2006, 44, 313-21.
    • (2006) Food Technol. Biotechnol. , vol.44 , pp. 313-321
    • Dufosse, L.1
  • 6
    • 34548479523 scopus 로고    scopus 로고
    • Modern application of xanthophylls in animal feeding - a review
    • Breithaupt, D., Modern application of xanthophylls in animal feeding - a review. Trends Food Sci. Technol. 2007, 18, 501-506.
    • (2007) Trends Food Sci. Technol. , vol.18 , pp. 501-506
    • Breithaupt, D.1
  • 7
    • 0025993603 scopus 로고
    • Production of astaxanthin from Haematococcus
    • Bubrick, P., Production of astaxanthin from Haematococcus. Bioresour. Technol. 1991, 38, 237-239.
    • (1991) Bioresour. Technol. , vol.38 , pp. 237-239
    • Bubrick, P.1
  • 8
    • 0000898584 scopus 로고
    • Phaffia, a new yeast genus in the Deuteromycotina (Blastomycetes)
    • Miller, M., Yoneyama, M., Soneda, M., Phaffia, a new yeast genus in the Deuteromycotina (Blastomycetes). Int. J. Syst. Bacteriol. 1976, 26, 286-291.
    • (1976) Int. J. Syst. Bacteriol. , vol.26 , pp. 286-291
    • Miller, M.1    Yoneyama, M.2    Soneda, M.3
  • 9
    • 85024355181 scopus 로고
    • Production of astaxanthin and 4-ketozeaxanthin by the marine bacterium, Agrobacterium aurantiacum
    • Yokoyama, A., Izumida, H., Miki, W., Production of astaxanthin and 4-ketozeaxanthin by the marine bacterium, Agrobacterium aurantiacum. Biosci. Biotechnol. Biochem. 1994, 58, 1842-1844.
    • (1994) Biosci. Biotechnol. Biochem. , vol.58 , pp. 1842-1844
    • Yokoyama, A.1    Izumida, H.2    Miki, W.3
  • 10
    • 0030068742 scopus 로고    scopus 로고
    • New trihydroxy-keto-carotenoids isolated from an astaxanthin-producing marine bacterium
    • Yokoyama, A., Miki, W., Izumida, H., Shizuri, Y., New trihydroxy-keto-carotenoids isolated from an astaxanthin-producing marine bacterium. Biosci. Biotechnol. Biochem. 1996, 60, 200-203.
    • (1996) Biosci. Biotechnol. Biochem. , vol.60 , pp. 200-203
    • Yokoyama, A.1    Miki, W.2    Izumida, H.3    Shizuri, Y.4
  • 11
    • 0000020607 scopus 로고
    • Mevalonic acid pyrophosphate and isopentenylpyrophosphate
    • Bloch, K., Chaykin, S., Phillips, A. H., de Waard, A., Mevalonic acid pyrophosphate and isopentenylpyrophosphate. J. Biol. Chem. 1959, 234, 2595-2604.
    • (1959) J. Biol. Chem. , vol.234 , pp. 2595-2604
    • Bloch, K.1    Chaykin, S.2    Phillips, A.H.3    de Waard, A.4
  • 12
    • 0027368126 scopus 로고
    • Isoprenoid biosynthesis in bacteria: A novel pathway for the early steps leading to isopentenyl diphosphate
    • Rohmer, M., Knani, M., Simonin, P., Sutter, B., Sahm, H., Isoprenoid biosynthesis in bacteria: A novel pathway for the early steps leading to isopentenyl diphosphate. Biochem. J. 1993, 295, 517-524.
    • (1993) Biochem. J. , vol.295 , pp. 517-524
    • Rohmer, M.1    Knani, M.2    Simonin, P.3    Sutter, B.4    Sahm, H.5
  • 13
    • 0034919134 scopus 로고    scopus 로고
    • Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses
    • Takeuchi, M., Hamana, K., Hiraishi, A., Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int. J. Syst. Evol. Microbiol. 2001, 51, 1405-1417.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1405-1417
    • Takeuchi, M.1    Hamana, K.2    Hiraishi, A.3
  • 14
    • 33748572987 scopus 로고    scopus 로고
    • Aerobic degradation of diethyl phthalate by Sphingomonas sp
    • Fang, H. H., Liang, D., Zhang, T., Aerobic degradation of diethyl phthalate by Sphingomonas sp. Bioresour. Technol. 2007, 98, 717-720.
    • (2007) Bioresour. Technol. , vol.98 , pp. 717-720
    • Fang, H.H.1    Liang, D.2    Zhang, T.3
  • 16
    • 78650833792 scopus 로고    scopus 로고
    • Production of metabolites in the biodegradation of phenanthrene, fluoranthene and pyrene by the mixed culture of Mycobacterium sp. and Sphingomonas sp
    • Zhong, Y., Luan, T., Lin, L., Liu, H., Tam, N. F., Production of metabolites in the biodegradation of phenanthrene, fluoranthene and pyrene by the mixed culture of Mycobacterium sp. and Sphingomonas sp. Bioresour. Technol. 2011, 102, 2965-2972.
    • (2011) Bioresour. Technol. , vol.102 , pp. 2965-2972
    • Zhong, Y.1    Luan, T.2    Lin, L.3    Liu, H.4    Tam, N.F.5
  • 17
    • 1342288687 scopus 로고    scopus 로고
    • Isolation of a β-carotene over-producing soil bacterium, Sphingomonas sp
    • Silva, C., Cabral, J., Van Keulen, F., Isolation of a β-carotene over-producing soil bacterium, Sphingomonas sp. Biotechnol. Lett. 2004, 26, 257-262.
    • (2004) Biotechnol. Lett. , vol.26 , pp. 257-262
    • Silva, C.1    Cabral, J.2    Van Keulen, F.3
  • 18
    • 84865231395 scopus 로고    scopus 로고
    • Transforming clinical microbiology with bacterial genome sequencing
    • Didelot, X., Bowden, R., Wilson, D. J., Peto, T. E., Crook, D. W., Transforming clinical microbiology with bacterial genome sequencing. Nat. Rev. Genet. 2012, 13, 601-612.
    • (2012) Nat. Rev. Genet. , vol.13 , pp. 601-612
    • Didelot, X.1    Bowden, R.2    Wilson, D.J.3    Peto, T.E.4    Crook, D.W.5
  • 19
    • 84863651532 scopus 로고    scopus 로고
    • Hybrid error correction and de novo assembly of single-molecule sequencing reads
    • Koren, S., Schatz, M. C., Walenz, B. P., Martin, J. et al., Hybrid error correction and de novo assembly of single-molecule sequencing reads. Nat. Biotechnol. 2012, 30, 693-700.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 693-700
    • Koren, S.1    Schatz, M.C.2    Walenz, B.P.3    Martin, J.4
  • 21
    • 84860756398 scopus 로고    scopus 로고
    • Performance comparison of benchtop high-throughput sequencing platforms
    • Loman, N. J., Misra, R. V., Dallman, T. J., Constantinidou, C. et al., Performance comparison of benchtop high-throughput sequencing platforms. Nat. Biotechnol. 2012, 30, 434-439.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 434-439
    • Loman, N.J.1    Misra, R.V.2    Dallman, T.J.3    Constantinidou, C.4
  • 22
    • 84866266717 scopus 로고    scopus 로고
    • Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): Application and theory
    • Chaisson, M. J., Tesler, G., Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): Application and theory. BMC Bioinf. 2012, 13, 238.
    • (2012) BMC Bioinf. , vol.13 , pp. 238
    • Chaisson, M.J.1    Tesler, G.2
  • 23
    • 57249105124 scopus 로고    scopus 로고
    • Aggressive assembly of pyrosequencing reads with mates
    • Miller, J. R., Delcher, A. L., Koren, S., Venter, E. et al., Aggressive assembly of pyrosequencing reads with mates. Bioinformatics 2008, 24, 2818-2824.
    • (2008) Bioinformatics , vol.24 , pp. 2818-2824
    • Miller, J.R.1    Delcher, A.L.2    Koren, S.3    Venter, E.4
  • 24
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: An improved ultrafast tool for short read alignment
    • Li, R., Yu, C., Li, Y., Lam, T.-W. et al., SOAP2: An improved ultrafast tool for short read alignment. Bioinformatics 2009, 25, 1966-1967.
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1    Yu, C.2    Li, Y.3    Lam, T.-W.4
  • 25
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • Delcher, A. L., Bratke, K. A., Powers, E. C., Salzberg, S. L., Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 2007, 23, 673-679.
    • (2007) Bioinformatics , vol.23 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 26
    • 84901617508 scopus 로고    scopus 로고
    • In vitro reconstitution of mevalonate pathway and targeted engineering of farnesene overproduction in Escherichia coli
    • Zhu, F., Zhong, X., Hu, M., Lu, L. et al., In vitro reconstitution of mevalonate pathway and targeted engineering of farnesene overproduction in Escherichia coli. Biotechnol. Bioeng. 2014, 111, 1396-1405.
    • (2014) Biotechnol. Bioeng. , vol.111 , pp. 1396-1405
    • Zhu, F.1    Zhong, X.2    Hu, M.3    Lu, L.4
  • 27
    • 0028172339 scopus 로고
    • Functional assignment of Erwinia herbicola Eho10 carotenoid genes expressed in Escherichia coli
    • Hundle, B., Alberti, M., Nievelstein, V., Beyer, P. et al., Functional assignment of Erwinia herbicola Eho10 carotenoid genes expressed in Escherichia coli. Mol. Gen. Genet. 1994, 245, 406-416.
    • (1994) Mol. Gen. Genet. , vol.245 , pp. 406-416
    • Hundle, B.1    Alberti, M.2    Nievelstein, V.3    Beyer, P.4
  • 28
    • 0026129483 scopus 로고
    • Mapping of a carotenogenic gene cluster from Erwinia herbicola and functional identification of six genes
    • Schnurr, G., Schmidt, A., Sandmann, G., Mapping of a carotenogenic gene cluster from Erwinia herbicola and functional identification of six genes. FEMS Microbiol. Lett. 1991, 78, 157-161.
    • (1991) FEMS Microbiol. Lett. , vol.78 , pp. 157-161
    • Schnurr, G.1    Schmidt, A.2    Sandmann, G.3
  • 29
    • 23744476402 scopus 로고    scopus 로고
    • Elucidation of a carotenoid biosynthesis gene cluster encoding a novel enzyme, 2,2′-β-hydroxylase, from Brevundimonas sp. strain SD212 and combinatorial biosynthesis of new or rare xanthophylls
    • Nishida, Y., Adachi, K., Kasai, H., Shizuri, Y. et al., Elucidation of a carotenoid biosynthesis gene cluster encoding a novel enzyme, 2, 2′-β-hydroxylase, from Brevundimonas sp. strain SD212 and combinatorial biosynthesis of new or rare xanthophylls. Appl. Environ. Microbiol. 2005, 71, 4286-4296.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4286-4296
    • Nishida, Y.1    Adachi, K.2    Kasai, H.3    Shizuri, Y.4
  • 30
    • 79957471219 scopus 로고    scopus 로고
    • Enzymatic assembly of overlapping DNA fragments
    • Gibson, D. G., Enzymatic assembly of overlapping DNA fragments. Method Enzymol. 2011, 498, 349-361.
    • (2011) Method Enzymol. , vol.498 , pp. 349-361
    • Gibson, D.G.1
  • 31
    • 84923369792 scopus 로고    scopus 로고
    • Targeted engineering and scale up of lycopene overproduction in Escherichia coli
    • Zhu, F., Lu, L., Fu, S., Zhong, X. et al., Targeted engineering and scale up of lycopene overproduction in Escherichia coli. Process Biochem. 2014, 50, 341-346.
    • (2014) Process Biochem. , vol.50 , pp. 341-346
    • Zhu, F.1    Lu, L.2    Fu, S.3    Zhong, X.4
  • 32
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins
    • Anderson, L., Hunter, C. L., Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol. Cell. Proteomics 2006, 5, 573-588.
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 573-588
    • Anderson, L.1    Hunter, C.L.2
  • 33
    • 34447514501 scopus 로고    scopus 로고
    • Sphingomonas astaxanthinifaciens sp. nov., a novel astaxanthin-producing bacterium of the family Sphingomonadaceae isolated from Misasa, Tottori, Japan
    • Asker, D., Beppu, T., Ueda, K., Sphingomonas astaxanthinifaciens sp. nov., a novel astaxanthin-producing bacterium of the family Sphingomonadaceae isolated from Misasa, Tottori, Japan. FEMS Microbiol. Lett. 2007, 273, 140-148.
    • (2007) FEMS Microbiol. Lett. , vol.273 , pp. 140-148
    • Asker, D.1    Beppu, T.2    Ueda, K.3
  • 34
    • 0034175978 scopus 로고    scopus 로고
    • Commercial potential for Haematococcus microalgae as a natural source of astaxanthin
    • Lorenz, R. T., Cysewski, G. R., Commercial potential for Haematococcus microalgae as a natural source of astaxanthin. Trends Biotechnol. 2000, 18, 160-167.
    • (2000) Trends Biotechnol. , vol.18 , pp. 160-167
    • Lorenz, R.T.1    Cysewski, G.R.2
  • 36
    • 80052150179 scopus 로고    scopus 로고
    • Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
    • Rasko, D. A., Webster, D. R., Sahl, J. W., Bashir, A. et al., Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. New Engl. J. Med. 2011, 365, 709-717.
    • (2011) New Engl. J. Med. , vol.365 , pp. 709-717
    • Rasko, D.A.1    Webster, D.R.2    Sahl, J.W.3    Bashir, A.4
  • 37
    • 84876910795 scopus 로고    scopus 로고
    • Metabolic plasticity for isoprenoid biosynthesis in bacteria
    • Jordi, P.-G., Manuel, R.-C., Metabolic plasticity for isoprenoid biosynthesis in bacteria. Biochem. J. 2013, 452, 19-25.
    • (2013) Biochem. J. , vol.452 , pp. 19-25
    • Jordi, P.-G.1    Manuel, R.-C.2
  • 38
    • 33749872408 scopus 로고    scopus 로고
    • Characterization of bacterial β-carotene 3,3′-hydroxylases, CrtZ, and P450 in astaxanthin biosynthetic pathway and adonirubin production by gene combination in Escherichia coli
    • Choi, S.-K., Matsuda, S., Hoshino, T., Peng, X., Misawa, N., Characterization of bacterial β-carotene 3, 3′-hydroxylases, CrtZ, and P450 in astaxanthin biosynthetic pathway and adonirubin production by gene combination in Escherichia coli. Appl. Microbiol. Biotechnol. 2006, 72, 1238-1246.
    • (2006) Appl. Microbiol. Biotechnol. , vol.72 , pp. 1238-1246
    • Choi, S.-K.1    Matsuda, S.2    Hoshino, T.3    Peng, X.4    Misawa, N.5
  • 39
    • 29144522344 scopus 로고    scopus 로고
    • Diversity of carotenoid synthesis gene clusters from environmental Enterobacteriaceae strains
    • Sedkova, N., Tao, L., Rouvière, P. E., Cheng, Q., Diversity of carotenoid synthesis gene clusters from environmental Enterobacteriaceae strains. Appl. Environ. Microbiol. 2005, 71, 8141-8146.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8141-8146
    • Sedkova, N.1    Tao, L.2    Rouvière, P.E.3    Cheng, Q.4
  • 40
    • 84891857645 scopus 로고    scopus 로고
    • Genetic engineering of the complete carotenoid pathway towards enhanced astaxanthin formation in Xanthophyllomyces dendrorhous starting from a high-yield mutant
    • Gassel, S., Breitenbach, J., Sandmann, G., Genetic engineering of the complete carotenoid pathway towards enhanced astaxanthin formation in Xanthophyllomyces dendrorhous starting from a high-yield mutant. Appl. Microbiol. Biotechnol. 2014, 98, 345-350.
    • (2014) Appl. Microbiol. Biotechnol. , vol.98 , pp. 345-350
    • Gassel, S.1    Breitenbach, J.2    Sandmann, G.3
  • 41
    • 67650841831 scopus 로고    scopus 로고
    • Characterization of cyanobacterial β-carotene ketolase and hydroxylase genes in Escherichia coli, and their application for astaxanthin biosynthesis
    • Scaife, M. A., Burja, A. M., Wright, P. C., Characterization of cyanobacterial β-carotene ketolase and hydroxylase genes in Escherichia coli, and their application for astaxanthin biosynthesis. Biotechnol. Bioeng. 2009, 103, 944-955.
    • (2009) Biotechnol. Bioeng. , vol.103 , pp. 944-955
    • Scaife, M.A.1    Burja, A.M.2    Wright, P.C.3


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