Electrochemical determination of microRNAs based on isothermal strand-displacement polymerase reaction coupled with multienzyme functionalized magnetic micro-carriers

Biosensors and Bioelectronics

Volumn 80, Issue , 2016, Pages 344-351

  Ma, Wen ^a   Situ, Bo ^a   Lv, Weifeng ^a   Li, Bo ^a   Yin, Xiaomao ^b   Vadgama, Pankaj ^c   Zheng, Lei ^a   Wang, Wen ^c  

^a SOUTHERN MEDICAL UNIVERSITY   (China)

^b Nanfang Hospital and the Fifth Affiliated Hospital of Southern Medical University   (China)

^c QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Electrochemical sensing assay; Magnetic microcarriers; MicroRNA; Signal amplification

Indexed keywords

ASCORBIC ACID; CARBON; CHEMICAL DETECTION; COENZYMES; DIAGNOSIS; ELECTRODES; ISOTHERMS; MAGNETIC SEPARATION; MAGNETISM; PHOSPHATASES; PROTEINS;

ELECTROCHEMICAL DETERMINATION; ELECTROCHEMICAL SENSING; MAGNETIC MICROCARRIERS; MICRORNAS; POINT-OF-CARE TESTING; QUANTITATIVE DETECTION; SCREEN-PRINTED CARBON ELECTRODES; SIGNAL AMPLIFICATIONS;

RNA;

2 PHOSPHO L ASCORBIC ACID; ASCORBIC ACID; BIOTIN; MICRORNA; STREPTAVIDIN; UNCLASSIFIED DRUG; MIRN21 MICRORNA, HUMAN; NANOPARTICLE;

ANALYTIC METHOD; ARTICLE; CLINICAL LABORATORY; CONTROLLED STUDY; CYCLIC POTENTIOMETRY; ELECTROCHEMISTRY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; ISOTHERM; MAGNETIC SEPARATION; MOLECULAR BEACON; POINT OF CARE TESTING; POLYMERASE REACTION COUPLED WITH MULTIENZYME; PROTEIN PROTEIN INTERACTION; RNA ANALYSIS; SENSITIVITY ANALYSIS; BREAST; BREAST NEOPLASMS; CHEMISTRY; ELECTROCHEMICAL ANALYSIS; EVALUATION STUDY; FEMALE; GENETIC PROCEDURES; GENETICS; HUMAN; LIMIT OF DETECTION; MAGNET; NUCLEIC ACID AMPLIFICATION; PATHOLOGY; PROCEDURES; SENSITIVITY AND SPECIFICITY; ULTRASTRUCTURE;

BIOSENSING TECHNIQUES; BIOTIN; BREAST; BREAST NEOPLASMS; ELECTROCHEMICAL TECHNIQUES; FEMALE; HUMANS; LIMIT OF DETECTION; MAGNETS; MICRORNAS; NANOPARTICLES; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SENSITIVITY AND SPECIFICITY; STREPTAVIDIN;

EID: 84957079455     PISSN: 09565663     EISSN: 18734235     Source Type: Journal    
DOI: 10.1016/j.bios.2015.12.064     Document Type: Article

References (34)

1. Alsmadi O., Alkayal F., Monies D., Meyer B.F. Specific and complete human genome amplification with improved yield achieved by phi29 DNA polymerase and a novel primer at elevated temperature. BMC Res. Notes 2009, 2:48.
2. Ameres S.L., Zamore P.D. Diversifying microRNA sequence and function. Nat. Rev. Mol. Cell Biol. 2013, 14(8):475-488.
3. Bahn J.H., Zhang Q., Li F., Chan T.M., Lin X., Kim Y., Wong D.T., Xiao X. The landscape of microRNA, Piwi-interacting RNA, and circular RNA in human saliva. Clin. Chem. 2015, 61(1):221-230.
4. Campuzano S., Pedrero M., Pingarron J.M. Electrochemical genosensors for the detection of cancer-related miRNAs. Anal. Bioanal. Chem. 2014, 406(1):27-33.
5. Chen A., Gui G.F., Zhuo Y., Chai Y.Q., Xiang Y., Yuan R. Signal-off Electrochemiluminescence Biosensor Based on Phi29 DNA Polymerase Mediated Strand Displacement Amplification for MicroRNA Detection. Anal. Chem. 2015, 87(12):6328-6334.
6. Dong H., Lei J., Ding L., Wen Y., Ju H., Zhang X. MicroRNA: function, detection, and bioanalysis. Chem. Rev. 2013, 113(8):6207-6233.
7. Dong H., Zhang J., Ju H., Lu H., Wang S., Jin S., Hao K., Du H., Zhang X. Highly sensitive multiple microRNA detection based on fluorescence quenching of graphene oxide and isothermal strand-displacement polymerase reaction. Anal. Chem. 2012, 84(10):4587-4593.
8. Ghawana S., Paul A., Kumar H., Kumar A., Singh H., Bhardwaj P.K., Rani A., Singh R.S., Raizada J., Singh K., Kumar S. An RNA isolation system for plant tissues rich in secondary metabolites. BMC Res. Notes 2011, 4:85.
9. Hamidi-Asl E., Palchetti I., Hasheminejad E., Mascini M. A review on the electrochemical biosensors for determination of microRNAs. Talanta 2013, 115:74-83.
10. Huang R.C., Chiu W.J., Li Y.J., Huang C.C. Detection of microRNA in tumor cells using exonuclease III and graphene oxide-regulated signal amplification. ACS Appl. Mater. Interfaces 2014, 6(24):21780-21787.
11. Lagatie O., Van Loy T., Tritsmans L., Stuyver L.J. Viral miRNAs in plasma and urine divulge JC polyomavirus infection. Virol. J. 2014, 11:158.
12. le Provost G., Herrera R., Paiva J.A., Chaumeil P., Salin F., Plomion C. A micromethod for high throughput RNA extraction in forest trees. Biol. Res. 2007, 40(3):291-297.
13. Lewis S. Neurological disorders: microRNA gets motoring. Nat. Rev. Neurosci. 2014, 15(2):67.
14. Li X., Li D., Zhou W., Chai Y., Yuan R., Xiang Y. A microRNA-activated molecular machine for non-enzymatic target recycling amplification detection of microRNA from cancer cells. Chem. Commun. 2015, 51(55):11084-11087.
15. Lin S., Gregory R.I. MicroRNA biogenesis pathways in cancer. Nat. Rev. Cancer 2015, 15(6):321-333.
16. Liu L., Song C., Zhang Z., Yang J., Zhou L., Zhang X., Xie G. Ultrasensitive electrochemical detection of microRNA-21 combining layered nanostructure of oxidized single-walled carbon nanotubes and nanodiamonds by hybridization chain reaction. Biosens. Bioelectron. 2015, 70:351-357.
17. Luo M., Li N., Liu Y., Chen C., Xiang X., Ji X., He Z. Highly sensitive and multiple DNA biosensor based on isothermal strand-displacement polymerase reaction and functionalized magnetic microparticles. Biosens. Bioelectron. 2014, 55:318-323.
18. Manriquez R., Lopez-Dellamary F.A., Frydel J., Emmler T., Breitzke H., Buntkowsky G., Limbach H.H., Shenderovich I.G. Solid-state NMR studies of aminocarboxylic salt bridges in l-lysine modified cellulose. J. Phys. Chem. B 2009, 113(4):934-940.
19. Pers Y.M., Jorgensen C. MicroRNA in 2012: biotherapeutic potential of microRNAs in rheumatic diseases. Nat. Rev. Rheumatol. 2013, 9(2):76-78.
20. Preechaworapun A., Dai Z., Xiang Y., Chailapakul O., Wang J. Investigation of the enzyme hydrolysis products of the substrates of alkaline phosphatase in electrochemical immunosensing. Talanta 2008, 76(2):424-431.
21. Radi A.E., Acero S.J., Baldrich E., O'Sullivan C.K. Reusable impedimetric aptasensor. Anal. Chem. 2005, 77(19):6320-6323.
22. Radwan S.H., Azzazy H.M. Gold nanoparticles for molecular diagnostics. Expert Rev. Mol. Diagn. 2009, 9(5):511-524.
23. Shi C., Liu Q., Ma C., Zhong W. Exponential strand-displacement amplification for detection of microRNAs. Anal. Chem. 2014, 86(1):336-339.
24. Shi K., Dou B., Yang C., Chai Y., Yuan R., Xiang Y. DNA-fueled molecular machine enables enzyme-free target recycling amplification for electronic detection of microRNA from cancer cells with highly minimized background noise. Anal. Chem. 2015, 87(16):8578-8583.
25. Situ B., Cao N., Li B., Liu Q., Lin L., Dai Z., Zou X., Cai Z., Wang Q., Yan X., Zheng L. Sensitive electrochemical analysis of BRAF V600E mutation based on an amplification-refractory mutation system coupled with multienzyme functionalized Fe3O4/Au nanoparticles. Biosens. Bioelectron. 2013, 43:257-263.
26. Valoczi A., Hornyik C., Varga N., Burgyan J., Kauppinen S., Havelda Z. Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes. Nucleic Acids Res. 2004, 32(22):e175.
27. Wang C., Hu J., Lu M., Gu H., Zhou X., Chen X., Zen K., Zhang C.Y., Zhang T., Ge J., Wang J., Zhang C. A panel of five serum miRNAs as a potential diagnostic tool for early-stage renal cell carcinoma. Sci. Rep. 2015, 5:7610.
28. Wang J.X., Zhang X.J., Li Q., Wang K., Wang Y., Jiao J.Q., Feng C., Teng S., Zhou L.Y., Gong Y., Zhou Z.X., Liu J., Wang J.L., Li P.F. MicroRNA-103/107 regulate programmed necrosis and myocardial ischemia/reperfusion. Inj. Target. FADD Circ. Res. 2015, 117(4):352-363.
29. Wang X., Hou T., Lu T., Li F. Autonomous exonuclease III-assisted isothermal cycling signal amplification: a facile and highly sensitive fluorescence DNA glycosylase activity assay. Anal. Chem. 2014, 86(19):9626-9631.
30. Wilson M.S., Rauh R.D. Hydroquinone diphosphate: an alkaline phosphatase substrate that does not produce electrode fouling in electrochemical immunoassays. Biosens. Bioelectron. 2004, 20(2):276-283.
31. Yao B., Liu Y., Tabata M., Zhu H., Miyahara Y. Sensitive detection of microRNA by chronocoulometry and rolling circle amplification on a gold electrode. Chem. Commun. 2014, 50(68):9704-9706.
32. Zhang P., Wu X., Chai Y., Yuan R. An electrochemiluminescent microRNA biosensor based on hybridization chain reaction coupled with hemin as the signal enhancer. Analyst 2014, 139(11):2748-2753.
33. Zhu X., Shen Y., Cao J., Yin L., Ban F., Shu Y., Li G. Detection of microRNA SNPs with ultrahigh specificity by using reduced graphene oxide-assisted rolling circle amplification. Chem. Commun. 2015, 51(49):10002-10005.
34. Zou B., Song Q., Wang J., Liu Y., Zhou G. Invasive reaction assisted strand-displacement signal amplification for sensitive DNA detection. Chem. Commun. 2014, 50(89):13722-13724.