A review on the electrochemical biosensors for determination of microRNAs

Talanta

Volumn 115, Issue , 2013, Pages 74-83

  Hamidi Asl, Ezat ^a,b   Palchetti, Ilaria ^b   Hasheminejad, Ehteram ^a   Mascini, Marco ^b  

^a UNIVERSITY OF MAZANDARAN   (Iran)

^b UNIVERSITY OF FLORENCE   (Italy)

Author keywords

Biosensors; Electrochemistry; MicroRNAs

Indexed keywords

BIOSENSORS; CELL PROLIFERATION; CHEMICAL DETECTION; CONDUCTING POLYMERS; DISEASE CONTROL; DISEASES; ELECTROCHEMISTRY; GENE THERAPY; NUCLEIC ACIDS; POLYMERASE CHAIN REACTION; SURFACE PLASMON RESONANCE; TRANSCRIPTION;

BIOLOGICAL FUNCTIONS; CANCER PROGRESSION; CELL PROLIFERATION AND DEATH; CONDUCTING POLYMER NANOWIRES; ELECTROANALYTICAL CHEMISTRY; ELECTROCHEMICAL BIOSENSOR; MICRORNAS; UNTRANSLATED REGIONS;

RNA;

EID: 84877741829     PISSN: 00399140     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.talanta.2013.03.061     Document Type: Review

References (88)

1. I.E. Tothill Semin. Cell Dev. Biol. 20 2009 55 62
2. J. Cheng, P. Kapranov, J. Drenkow, S. Dike, S. Brubaker, S. Patel, J. Long, D. Stern, H. Tammana, G. Helt, V. Sementchenko, A. Piccolboni, S. Bekiranov, D.K. Bailey, M. Ganesh, S. Ghosh, I. Bell, D.S. Gerhard, and T.R. Gingeras Science 308 5725 2005 1149 1154
3. E. Birney, J.A. Stamatoyannopoulos, A. Dutta, R. Guigó, T.R. Gingeras, E.H. Margulies, Z. Weng, M. Snyder, E.T. Dermitzakis, R.E. Thurman, M.S. Kuehn, C.M. Taylor, S. Neph, C.M Koch, S. Asthana, A. Malhotra, I. Adzhubei, J.A. Greenbaum, R.M Andrews, P. Flicek, P.J. Boyle, H. Cao, N.P. Carter, G.K. Clelland, S. Davis, N. Day, P. Dhami, S.C. Dillon, M.O. Dorschner, H. Fiegler, P.G. Giresi, J. Goldy, M. Hawrylycz, A. Haydock, R. Humbert, K.D. James, B.E. Johnson, E.M. Johnson, T.T. Frum, E.R. Rosenzweig, N. Karnani, K. Lee, G.C. Lefebvre, P.A. Navas, F. Neri, S.C.J. Parker, P.J. Sabo, R. Sandstrom, A. Shafer, D. Vetrie, M. Weaver, S. Wilcox, M. Yu, F.S. Collins, J. Dekker, J.D. Lieb, T.D. Tullius, G.E. Crawford, S. Sunyaev, W.S. Noble, I. Dunham, F. Denoeud, A. Reymond, P. Kapranov, J. Rozowsky, D. Zheng, R. Castelo, A. Frankish, J. Harrow, S. Ghosh, A. Sandelin, I.L. Hofacker, R. Baertsch, D. Keefe, S. Dike, J. Cheng, H.A. Hirsch, E.A. Sekinger, J. Lagarde, J.F. Abril, A. Shahab, C. Flamm, C. Fried, J. Hackermüller, J. Hertel, M. Lindemeyer, K. Missal, A. Tanzer, S. Washietl, J. Korbel, O. Emanuelsson, J.S. Pedersen, N. Holroyd, R. Taylor, D. Swarbreck, N. Matthews, M.C. Dickson, D.J. Thomas, M.T. Weirauch, J. Gilbert, J. Drenkow, I. Bell, X.D. Zhao, K.G. Srinivasan, W.K. Sung, H.S. Ooi, K.P. Chiu, S. Foissac, T. Alioto, M. Brent, L. Pachter, M.L. Tress, A. Valencia, S.W. Choo, C.Y. Choo, C. Ucla, C. Manzano, C. Wyss, E. Cheung, T.G. Clark, J.B. Brown, M. Ganesh, S. Patel, H. Tammana, J. Chrast, C.N. Henrichsen, C. Kai, J. Kawai, U. Nagalakshmi, J. Wu, Z. Lian, J. Lian, P. Newburger, X. Zhang, P. Bickel, J.S. Mattick, P. Carninci, Y. Hayashizaki, S. Weissman, T. Hubbard, R.M. Myers, J. Rogers, P.F. Stadler, T.M. Lowe, C.L. Wei, Y. Ruan, K. Struhl, M. Gerstein, S.E. Antonarakis, and Y. Fu Nature 447 2007 799 816
4. S. Washietl, J.S. Pedersen, J.O. Korbel, C. Stocsits, A.R. Gruber, J. Hackermüller, J. Hertel, M. Lindemeyer, K. Reiche, A. Tanzer, C. Ucla, C. Wyss, S.E. Antonarakis, F. Denoeud, J. Lagarde, J. Drenkow, P. Kapranov, T.R. Gingeras, R. Guigó, M. Snyder, M.B. Gerstein, A. Reymond, I.L. Hofacker, and P.F. Stadler Genome Res. 17 6 2007 852 864
5. M. Pheasant, and J.S. Mattick Genome Res. 17 9 2007 1245 1253
6. A. Hüttenhofer, P. Schattner, and N. Polacek Trends Genet. 21 5 2005 289 297
7. R.C. Friedman, K.K. Farh, C.B. Burge, and D.P. Bartel Genome Res. 19 1 2009 92 105
8. R.C. Lee, R.L. Feinbaum, and V. Ambros Cell 75 5 1993 843 854
9. J.L. Quesne, and C. Caldas Mol. Oncol. 4 2010 230 241
10. L.P. Lim, N.C. Lau, E.G. Weinstein, A. Abdelhakim, S. Yekta, M.W. Rhoades, C.B. Burge, and D.P. Bartel Genes Dev. 17 2003 991 1008
11. L.P. Lim, M.E. Glasner, S. Yekta, C.B. Burge, and D.P. Bartel Science 299 2003 1540
12. S. Griffiths-Jones1, H. Kaur Saini, S. Van Dongen, and A.J. Enright Nucleic Acids Res. 36 2008 D154 D158
13. A.J. Qavi, J.T. Kindt, and R.C. Bailey Anal. Bioanal. Chem. 398 2010 2535 2549
14. K.A. Cissell, and S.K. Deo Anal. Bioanal. Chem. 394 2009 1109 1116
15. L. He, J.M. Thomson, M.T. Hemann, E. Hernando-Monge, D. Mu, S. Goodson, S. Powers, C. Cordon-Cardo, S.W. Lowe, G.J. Hannon, and S.M. Hammond Nature 435 7043 2005 828 833
16. J.W. Cui, Y.J. Li, A. Sarkar, J. Brown, Y.H. Tan, M. Premyslova, C. Michaud, N. Iscove, G.J. Wang, and Y. Ben-David Blood 110 7 2007 2631 2640
17. K.A. O'Donnell, E.A. Wentzel, K.I. Zeller, C.V. Dang, and J.T. Mendell Nature 435 7043 2005 839 843
18. B.S. Nielsen, S. Jørgensen, J.U. Fog, R. Søkilde, I.J. Christensen, U. Hansen, N. Brünner, A. Baker, S. Møller, and H.J. Nielsen. Clin. Exp. Metastasis 28 1 2010 27 38
19. Y. Zhao, J.F. Ransom, A. Li, V. Vedantham, M.V. Drehle, A.N. Muth, T. Tsuchihashi, M.T. McManus, R.J. Schwartz, and D. Srivastava Cell 129 2 2007 303 317
20. Y. Zhao, E. Samal, and D. Srivastava Nature 436 7048 2005 214 220
21. B. Yang, H. Lin, J. Xiao, Y. Lu, X. Luo, B. Li, Y. Zhang, C. Xu, Y. Bai, H. Wang, G. Chen, and Z. Wang Nat. Med. 13 4 2007 486 491
22. G. Schratt Nat. Rev. Neurosci. 10 12 2009 842 849
23. N.J. Beveridge, E. Gardiner, A.P. Carroll, P.A. Tooney, and M.J. Cairns Mol. Psychiatry 15 12 2009 1176 1189
24. K.A. Cissell, S. Shrestha, and S.K. Deo Anal. Chem. 79 2007 4754 4761
25. R.C. Lee, and V. Ambros Science 294 2001 862 864
26. J.C. Alwine, D.J. Kemp, and G.R. Stark Proc. Nat. Acad. Sci. U.S.A. 74 12 1977 5350 5354
27. S. Streit, C.W. Michalski, M. Erkan, J. Kleef, and H. Friess Nat. Protoc. 4 2009 37 43
28. P. Liang, and A.B. Pardee Curr. Opin. Immunol. 7 1995 274 280
29. G. Engler-Blum, M. Meier, J. Frank, and G.A. Muller Anal. Biochem. 210 1993 235 244
30. K. Schlamp, A. Weinmann, M. Krupp, T. Maass, P.R. Galle, and A. Teufel Gene 427 2008 47 50
31. E. Varallyay, J. Burgyan, and Z. Havelda Nat. Protoc. 3 2008 190 196
32. N.C. Lau, L.P. Lim, E.G. Weinstein, and D.P. Bartel Science 294 2001 858 862
33. M. Lagos-Quintana, R. Rauhut, W. Lendeckel, and T. Tuschl Science 294 2001 853 858
34. A. Grishok, A.E. Pasquinelli, D. Conte, N. Li, S. Parrish, I. Ha, D.L. Baillie, A. Fire, G. Ruvkun, and C.C. Mello Cell 106 2001 23 34
35. M. Lagos-Quintana, R. Rauhut, W. Lendeckel, and T. Tuschl Science 294 2001 853 858
36. P.J. Russel iGenetics: A Molecular Approach 2005 Pearson Education San Francisco, California, United States of America
37. M. Mattie, C.C. Benz, J. Bowers, K. Sensinger, L. Wong, G.K. Scott, V. Fedele, D. Ginzinger, R. Getts, and C. Haqq Mol. Cancer 5 1 2006 24
38. M. Schena, D. Shalon, R.W. Davis, and P.O. Brown Science 270 5235 1995 467 470
39. L.H. Augenlicht, and D. Kobrin Cancer Res. 42 1982 1088 1093
40. P.T. Nelson, D.A. Baldwin, L.M. Scearce, J.C. Oberholtzer, J.W. Tobias, and Z. Mourelatos Nat. Methods 1 2004 155 161
41. R. Liang, W. Li, Y. Li, C. Tan, J. Li, Y. Jin, and K. Ruan Nucleic Acids Res. 33 2005 e17
42. M. Castoldi, S. Schmidt, V. Benes, M. Noerholm, A.E. Kulozik, M.W. Hentze, and M.U. Muckenthaler RNA 12 2006 913 920
43. D. Baldwin, V. Crane, and D. Rice Curr. Opin. Plant Biol. 2 1999 96 103
44. M. Taniguchi, K. Miura, H. Iwao, and S. Yamanaka Genomics 71 2001 34 39
45. T.D. Schmittgen, J. Jiang, Q. Liu, and L Yang Nucleic Acids Res. 32 4 2004 e43
46. S.A. Bustin. J. Mol. Endocrinol. 25 2000 169 193
47. I.M. Mackay, E.K. Arden, and A. Nitsche Nucleic Acids Res. 30 6 2002 1292 1305
48. J. Li, B. Yao, H. Huang, Z. Wang, C. Sun, Y. Fan, Q. Chang, S. Li, X. Wang, and J. Xi Anal. Chem. 81 2009 5446 5451
49. E.J. Blackie, R. Le, C. Eric, and P.G. Etchegoin J. Am. Chem. Soc. 131 40 2009 14466 14472
50. S.D. Hudson, and G. Chumanov Anal. Bioanal. Chem. 394 2009 679 686
51. J.D. Driskell, A.G. Seto, L.P. Jones, S. Jokela, R.A. Dluhy, Y.P. Zhao, and R.A. Tripp Biosens. Bioelectron. 24 2008 917 922
52. M. Muniz-Miranda, C. Gellini, M. Pagliai, M. Innocenti, P.R. Salvi, and V. Schettino J. Phys. Chem. C 114 2010 13730 13735
53. H. Cho, B. Lee, G.L. Liu, A. Agarwal, and L.P. Lee Lab Chip 9 23 2009 3360 3363
54. J. Homola Chem. Rev. 108 2008 462 493
55. H. Sipova, S. Zhang, A. Dudley, D. Galas, K. Wang, and J. Homola Anal. Chem. 82 2010 10110 10115
56. N. Nasheri, J. Cheng, R. Singaravelu, P. Wu, M.T. McDermott, and J.P. Pezacki Anal. Biochem. 412 2 2011 165 172
57. S. Scarano, M. Mascini, A.P.F. Turner, and M. Minunni Biosens. Bioelectron. 25 2010 957 966
58. S. Fang, H.J. Lee, A.W. Wark, and R.M. Corn J. Am. Chem. Soc. 128 2006 14044 14046
59. J.B. Mandir, M.R. Lockett, M.F. Phillips, H.T. Allawi, V.I. Lyamichev, and L.M. Smith Anal. Chem. 81 2009 8949 8956
60. K.R. Spring, and M.W. Davidson Nikon Microsc. U. Retrieved 09 2008 28
61. H.M. Chan, L.S. Chan, R.N. Wong, and H.W. Li Anal. Chem. 82 2010 6911 6918
62. J. Zhang, Y. Fu, Y. Mei, F. Jiang, and J.R. Lakowicz Anal. Chem. 82 2010 4464 4471
63. J. Li, S. Schachermeyer, Y. Wang, Y. Yin, and W. Zhong Anal. Chem. 81 23 2009 9723 9729
64. E.A. Hunt, A.M. Goulding, and S.K. Deo Anal. Biochem. 387 2009 1 12
65. K.A. Cissell, Y. Rahimi, S. Shrestha, E.A. Hunt, and S.K. Deo Anal. Chem. 80 2008 2319 2325
66. M. Hutchens, and G.D. Luker Cell. Microbiol. 9 2007 2315 2322
67. I. Bray, A. Tivnan, K. Bryan, N.H. Foley, K.M. Watters, L. Tracey, A.M Davidoff, and R.L. Stallings Cancer Lett. 303 2011 56 64
68. J.P. Tosar, G. Branas, and J. Laíz Biosens. Bioelectron. 26 2010 1205 1217
69. F. Lucarelli, S. Tombelli, M. Minunni, G. Marrazza, and M. Mascini Anal. Chim. Acta 609 2008 139 159
70. Z. Gao, and Z. Yang Anal. Chem. 78 2006 1470 1477
71. Z. Gao, and Y.Hong- Yu Sens. Actuators, B 121 2007 552 559
72. Y. Peng, and Z. Gao Anal. Chem. 83 2011 820 827
73. H. Dong, S. Jin, H. Ju, K. Hao, L.-P. Xu, H. Lu, and X. Zhang Anal. Chem. 84 20 2012 8670 8674
74. Y. Ma, J. Zhang, G. Zhang, and H. He J. Am. Chem. Soc. 126 2004 7097 7101
75. G. Zhang, J.H. Chua, R.-E. Chee, A. Agarwal, and S. MeinWong Biosens. Bioelectron. 24 2009 2504 2508
76. Y. Fan, X. Chen, A.D. Trigg, C. h. Tung, J. Kong, and Z. Gao J. Am. Chem. Soc. 129 2007 5437 5443
77. C. Pohlmann, and M. Sprinzl Anal. Chem. 82 11 2010 4434 4440
78. Z. Cai, Y. Song, Y. Wu, Z. Zhu, C.J. Yang, and X. Chen Biosens. Bioelectron. 41 2013 783 788
79. F. Bettazzi, E. Hamid-Asl, C.L. Esposito, C. Quintavalle, N. Formisano, S. Laschi, S. Catuogno, M. Iaboni, G. Marrazza, M. Mascini, L. Cerchia, V. De Franciscis, G. Condorelli, and I. Palchetti Anal. Bioanal. Chem. 405 2-3 2013 1025 1034
80. H. Yin, Y. Zhou, H. Zhang, X. Meng, and S. Ai Biosens. Bioelectron. 33 2012 247 253
81. T. Kilic, S.N. Topkaya, D.O. Ariksoysal, M. Ozsoz, P. Ballar, Y. Erac, and O. Gozen Biosens. Bioelectron. 38 2012 195 201
82. E. Palecek, E. Lukasova, F. Jelen, and M. Vojtiskova Bioelectrochem. Bioenerg. 8 444 1981 497 506
83. M. Trefulka, M. Bartošík, and E. Paleček Electrochem. Commun. 12 2010 1760 1763
84. Z. Gao, and Y.H. Yu Biosens. Bioelectron. 22 2007 933 940
85. J.B. Raoof, M.S. Hejazi, R. Ojani, and E. Hamidi-Asl Int. J. Electrochem. Sci. 4 2009 1436 1451
86. J.B. Raoof, R. Ojani, S.M. Golabi, E. Hamidi-Asl, and M.S. Hejazi Sens. Actuators, B 157 2011 195 201
87. E.A. Lusi, M. Passamano, P. Guarascio, A. Scarpa, and L. Schiavo Anal. Chem. 81 2009 2819 2822
88. E. Hamidi-Asl, J.B. Raoof, R. Ojani, S.M. Golabi, M.S. Hejazi, J. Iran. Chem. Soc. (2013), DOI 10.1007/s13738-013-0254-0, In press