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Volumn 30, Issue 5, 2016, Pages 581-593

Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross-platform transferable chemical signatures (Rapid Commun. Mass Spectrom., (2016), 30, (581-593), 10.1002/rcm.7475);Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross-platform transferable chemical signatures

Author keywords

[No Author keywords available]

Indexed keywords

BIOMOLECULES; DATA HANDLING; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; LIBRARIES; SPECTROMETRY;

EID: 84957052936     PISSN: 09514198     EISSN: 10970231     Source Type: Journal    
DOI: 10.1002/rcm.7773     Document Type: Erratum
Times cited : (40)

References (51)
  • 1
    • 84858790233 scopus 로고    scopus 로고
    • Innovation: Metabolomics: the apogee of the omics trilogy
    • G. J. Patti, O. Yanes, G. Siuzdak,. Innovation: Metabolomics: the apogee of the omics trilogy. Nat. Rev. Mol. Cell Biol. 2012, 13, 263.
    • (2012) Nat. Rev. Mol. Cell Biol. , vol.13 , pp. 263
    • Patti, G.J.1    Yanes, O.2    Siuzdak, G.3
  • 2
    • 79954582170 scopus 로고    scopus 로고
    • Expanding coverage of the metabolome for global metabolite profiling
    • O. Yanes, R. Tautenhahn, G. J. Patti, G. Siuzdak,. Expanding coverage of the metabolome for global metabolite profiling. Anal. Chem. 2011, 83, 2152.
    • (2011) Anal. Chem. , vol.83 , pp. 2152
    • Yanes, O.1    Tautenhahn, R.2    Patti, G.J.3    Siuzdak, G.4
  • 4
    • 84876118914 scopus 로고    scopus 로고
    • New advances in separation science for metabolomics: Resolving chemical diversity in a post-genomic era
    • N. L. Kuehnbaum, P. Britz-McKibbin,. New advances in separation science for metabolomics: resolving chemical diversity in a post-genomic era. Chem. Rev. 2013, 113, 2437.
    • (2013) Chem. Rev , vol.113 , pp. 2437
    • Kuehnbaum, N.L.1    Britz-Mckibbin, P.2
  • 5
    • 64649089947 scopus 로고    scopus 로고
    • Cross-platform comparison of methods for quantitative metabolomics of primary metabolism
    • J. M. Buscher, D. Czernik, J. C. Ewald, U. Sauer, N. Zamboni,. Cross-platform comparison of methods for quantitative metabolomics of primary metabolism. Anal. Chem. 2009, 81, 2135.
    • (2009) Anal. Chem. , vol.81 , pp. 2135
    • Buscher, J.M.1    Czernik, D.2    Ewald, J.C.3    Sauer, U.4    Zamboni, N.5
  • 7
    • 39149126712 scopus 로고    scopus 로고
    • Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts
    • O. Beckonert, H. C. Keun, T. M. Ebbels, J. Bundy, E. Holmes, J. C. Lindon, J. K. Nicholson,. Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. Nat. Protocols 2007, 2, 2692.
    • (2007) Nat. Protocols , vol.2 , pp. 2692
    • Beckonert, O.1    Keun, H.C.2    Ebbels, T.M.3    Bundy, J.4    Holmes, E.5    Lindon, J.C.6    Nicholson, J.K.7
  • 10
    • 77049086563 scopus 로고    scopus 로고
    • Comprehensive mass spectrometry based metabolic profiling of blood plasma reveals potent discriminatory classifiers of pancreatic cancer
    • S. Urayama, W. Zou, K. Brooks, V. Tolstikov,. Comprehensive mass spectrometry based metabolic profiling of blood plasma reveals potent discriminatory classifiers of pancreatic cancer. Rapid Commun. Mass Spectrom. 2010, 24, 613.
    • (2010) Rapid Commun. Mass Spectrom. , vol.24 , pp. 613
    • Urayama, S.1    Zou, W.2    Brooks, K.3    Tolstikov, V.4
  • 13
    • 80052379193 scopus 로고    scopus 로고
    • Metabonomic Study of Lung Cancer and the Effects of Radiotherapy on Lung Cancer Patients: Analysis of Highly Polar Metabolites by Ultraperformance HILIC Coupled with Q-TOF MS
    • X. M. Cai, J. Dong, L. J. Zou, X. Y. Xue, X. L. Zhang, X. M. Liang,. Metabonomic Study of Lung Cancer and the Effects of Radiotherapy on Lung Cancer Patients: Analysis of Highly Polar Metabolites by Ultraperformance HILIC Coupled with Q-TOF MS. Chromatographia 2011, 74, 391.
    • (2011) Chromatographia , vol.74 , pp. 391
    • Cai, X.M.1    Dong, J.2    Zou, L.J.3    Xue, X.Y.4    Zhang, X.L.5    Liang, X.M.6
  • 14
    • 69249087677 scopus 로고    scopus 로고
    • Analysis of highly polar metabolites in human plasma by ultra-performance hydrophilic interaction liquid chromatography coupled with quadrupole-time of flight mass spectrometry
    • X. M. Cai, L. Zou, J. Dong, L. Zhao, Y. Wang, Q. Xu, X. Xue, X. Zhang, X. Liang,. Analysis of highly polar metabolites in human plasma by ultra-performance hydrophilic interaction liquid chromatography coupled with quadrupole-time of flight mass spectrometry. Anal. Chim. Acta 2009, 650, 10.
    • (2009) Anal. Chim. Acta , vol.650 , pp. 10
    • Cai, X.M.1    Zou, L.2    Dong, J.3    Zhao, L.4    Wang, Y.5    Xu, Q.6    Xue, X.7    Zhang, X.8    Liang, X.9
  • 15
    • 32444451016 scopus 로고    scopus 로고
    • Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry
    • E. J. Want, G. O'Maille, C. A. Smith, T. R. Brandon, W. Uritboonthai, C. Qin, S. A. Trauger, G. Siuzdak,. Solvent-dependent metabolite distribution, clustering, and protein extraction for serum profiling with mass spectrometry. Anal. Chem. 2006, 78, 743.
    • (2006) Anal. Chem. , vol.78 , pp. 743
    • Want, E.J.1    O'Maille, G.2    Smith, C.A.3    Brandon, T.R.4    Uritboonthai, W.5    Qin, C.6    Trauger, S.A.7    Siuzdak, G.8
  • 16
    • 84871784197 scopus 로고    scopus 로고
    • Comparative analysis of sample preparation methods to handle the complexity of the blood fluid metabolome: When less is more
    • S. Tulipani, R. Llorach, M. Urpi-Sarda, C. Andres-Lacueva,. Comparative analysis of sample preparation methods to handle the complexity of the blood fluid metabolome: When less is more. Anal.Chem. 2013, 85, 341.
    • (2013) Anal.Chem. , vol.85 , pp. 341
    • Tulipani, S.1    Llorach, R.2    Urpi-Sarda, M.3    Andres-Lacueva, C.4
  • 17
    • 66149126908 scopus 로고    scopus 로고
    • Investigation of human blood plasma sample preparation for performing metabolomics using ultrahigh performance liquid chromatography/mass spectrometry
    • S. J. Bruce, I. Tavazzi, V. Parisod, S. Rezzi, S. Kochhar, P. A. Guy,. Investigation of human blood plasma sample preparation for performing metabolomics using ultrahigh performance liquid chromatography/mass spectrometry. Anal. Chem. 2009, 81, 3285.
    • (2009) Anal. Chem. , vol.81 , pp. 3285
    • Bruce, S.J.1    Tavazzi, I.2    Parisod, V.3    Rezzi, S.4    Kochhar, S.5    Guy, P.A.6
  • 19
    • 81255138967 scopus 로고    scopus 로고
    • Detection, identification, and quantification of selenoproteins in a candidate human plasma standard reference material
    • G. Ballihaut, L. E. Kilpatrick, W. C. Davis,. Detection, identification, and quantification of selenoproteins in a candidate human plasma standard reference material. Anal. Chem. 2011, 83, 8667.
    • (2011) Anal. Chem. , vol.83 , pp. 8667
    • Ballihaut, G.1    Kilpatrick, L.E.2    Davis, W.C.3
  • 20
    • 77955917818 scopus 로고    scopus 로고
    • Comparison of orthogonal liquid and gas chromatography-mass spectrometry platforms for the determination of amino acid concentrations in human plasma
    • E. A. McGaw, K. W. Phinney, M. S. Lowenthal,. Comparison of orthogonal liquid and gas chromatography-mass spectrometry platforms for the determination of amino acid concentrations in human plasma. J. Chromatogr. A 2010, 1217, 5822.
    • (2010) J. Chromatogr. A , vol.1217 , pp. 5822
    • McGaw, E.A.1    Phinney, K.W.2    Lowenthal, M.S.3
  • 21
    • 81855227650 scopus 로고    scopus 로고
    • Determination of perfluorinated compounds in human plasma and serum Standard Reference Materials using independent analytical methods
    • J. L. Reiner, K. W. Phinney, J. M. Keller,. Determination of perfluorinated compounds in human plasma and serum Standard Reference Materials using independent analytical methods. Anal. Bioanal. Chem. 2011, 401, 2899.
    • (2011) Anal. Bioanal. Chem. , vol.401 , pp. 2899
    • Reiner, J.L.1    Phinney, K.W.2    Keller, J.M.3
  • 23
    • 78049506517 scopus 로고    scopus 로고
    • Quantitative analysis of blood plasma metabolites using isotope enhanced NMR methods
    • G. A. Gowda, F. Tayyari, T. Ye, Y. Suryani, S. Wei, N. Shanaiah, D. Raftery,. Quantitative analysis of blood plasma metabolites using isotope enhanced NMR methods. Anal. Chem. 2010, 82, 8983.
    • (2010) Anal. Chem. , vol.82 , pp. 8983
    • Gowda, G.A.1    Tayyari, F.2    Ye, T.3    Suryani, Y.4    Wei, S.5    Shanaiah, N.6    Raftery, D.7
  • 24
    • 77953735210 scopus 로고    scopus 로고
    • Modifications to the NIST reference measurement procedure (RMP) for the determination of serum glucose by isotope dilution gas chromatography/mass spectrometry
    • J. L. Prendergast, L. T. Sniegoski, M. J. Welch, K. W. Phinney,. Modifications to the NIST reference measurement procedure (RMP) for the determination of serum glucose by isotope dilution gas chromatography/mass spectrometry. Anal. Bioanal. Chem. 2010, 397, 1779.
    • (2010) Anal. Bioanal. Chem. , vol.397 , pp. 1779
    • Prendergast, J.L.1    Sniegoski, L.T.2    Welch, M.J.3    Phinney, K.W.4
  • 26
    • 24044513966 scopus 로고    scopus 로고
    • Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
    • J. E. Elias, W. Haas, B. K. Faherty, S. P. Gygi,. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat. Methods 2005, 2, 667.
    • (2005) Nat. Methods , vol.2 , pp. 667
    • Elias, J.E.1    Haas, W.2    Faherty, B.K.3    Gygi, S.P.4
  • 27
    • 32444446805 scopus 로고    scopus 로고
    • XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
    • C. A. Smith, E. J. Want, G. O'Maille, R. Abagyan, G. Siuzdak,. XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 2006, 78, 779.
    • (2006) Anal. Chem. , vol.78 , pp. 779
    • Smith, C.A.1    Want, E.J.2    O'Maille, G.3    Abagyan, R.4    Siuzdak, G.5
  • 28
    • 60649089559 scopus 로고    scopus 로고
    • Highly sensitive feature detection for high resolution LC/MS
    • R. Tautenhahn, C. Bottcher, S. Neumann,. Highly sensitive feature detection for high resolution LC/MS. BMC Bioinformatics 2008, 9, 504.
    • (2008) BMC Bioinformatics , vol.9 , pp. 504
    • Tautenhahn, R.1    Bottcher, C.2    Neumann, S.3
  • 29
    • 77957230413 scopus 로고    scopus 로고
    • Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data
    • a.
    • E. J. W., a., T. M. D. E,., H. Paul Benton,. Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data. Bioinformatics 2010, 26, 2488.
    • (2010) Bioinformatics , vol.26 , pp. 2488
    • Ji, W.E.1    Di, E.T.M.2    Benton, H.P.3
  • 30
    • 85153993663 scopus 로고    scopus 로고
    • Available: http://peptide.nist.gov.
  • 32
    • 61849126658 scopus 로고    scopus 로고
    • Guideline for disinfection and sterilization in healthcare facilities
    • W. A. Rutala, D. J. Weber,. Guideline for disinfection and sterilization in healthcare facilities. Centers for Disease Control (US), 2008.
    • (2008) Centers for Disease Control (US)
    • Rutala, W.A.1    Weber, D.J.2
  • 33
    • 35248888115 scopus 로고    scopus 로고
    • Virus inactivation by protein denaturants used in affinity chromatography
    • P. L. Roberts, D. Lloyd,. Virus inactivation by protein denaturants used in affinity chromatography. Biologicals 2007, 35, 343.
    • (2007) Biologicals , vol.35 , pp. 343
    • Roberts, P.L.1    Lloyd, D.2
  • 34
    • 34248573460 scopus 로고    scopus 로고
    • Method transfer for fast liquid chromatography in pharmaceutical analysis: Application to short columns packed with small particle. Part I: Isocratic separation
    • D. Guillarme, D. T. Nguyen, S. Rudaz, J. L. Veuthey,. Method transfer for fast liquid chromatography in pharmaceutical analysis: application to short columns packed with small particle. Part I: isocratic separation. Eur. J. Pharm. Biopharm. 2007, 66, 475.
    • (2007) Eur. J. Pharm. Biopharm. , vol.66 , pp. 475
    • Guillarme, D.1    Nguyen, D.T.2    Rudaz, S.3    Veuthey, J.L.4
  • 35
    • 37849007036 scopus 로고    scopus 로고
    • Method transfer for fast liquid chromatography in pharmaceutical analysis: Application to short columns packed with small particle. Part II: Gradient experiments
    • D. Guillarme, D. T. Nguyen, S. Rudaz, J. L. Veuthey,. Method transfer for fast liquid chromatography in pharmaceutical analysis: application to short columns packed with small particle. Part II: gradient experiments. Eur. J. Pharm. Biopharm. 2008, 68, 430.
    • (2008) Eur. J. Pharm. Biopharm. , vol.68 , pp. 430
    • Guillarme, D.1    Nguyen, D.T.2    Rudaz, S.3    Veuthey, J.L.4
  • 37
    • 0000355793 scopus 로고
    • Estimating probabilities of correct identification from results of mass spectral library searches
    • S. E. Stein,. Estimating probabilities of correct identification from results of mass spectral library searches. J. Am. Soc. Mass Spectrom. 1994, 5, 316.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 316
    • Stein, S.E.1
  • 38
    • 0000881748 scopus 로고
    • Optimization and testing of mass spectral library search algorithms for compound identification
    • S. E. Stein, D. R. Scott,. Optimization and testing of mass spectral library search algorithms for compound identification. J. Am. Soc. Mass Spectrom. 1994, 5, 859.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 859
    • Stein, S.E.1    Scott, D.R.2
  • 39
    • 84910635318 scopus 로고    scopus 로고
    • Creation of libraries of recurring mass spectra from large data sets assisted by a dual-column workflow
    • W. G. Mallard, N. R. Andriamaharavo, Y. A. Mirokhin, J. M. Halket, S. E. Stein,. Creation of libraries of recurring mass spectra from large data sets assisted by a dual-column workflow. Anal. Chem. 2014, 86, 10231.
    • (2014) Anal. Chem. , vol.86 , pp. 10231
    • Mallard, W.G.1    Andriamaharavo, N.R.2    Mirokhin, Y.A.3    Halket, J.M.4    Stein, S.E.5
  • 40
    • 84905589752 scopus 로고    scopus 로고
    • Pairwise alignment of chromatograms using an extended Fisher-Rao metric
    • W. E. Wallace, A. Srivastava, K. H. Telu, Y. Simõn-Manso,. Pairwise alignment of chromatograms using an extended Fisher-Rao metric. Anal. Chim. Acta 2014, 841, 10.
    • (2014) Anal. Chim. Acta , vol.841 , pp. 10
    • Wallace, W.E.1    Srivastava, A.2    Telu, K.H.3    Simõn-Manso, Y.4
  • 42
    • 84860380628 scopus 로고    scopus 로고
    • Missing values in mass spectrometry based metabolomics: An undervalued step in the data processing pipeline
    • O. Hrydziuszko, M. R. Viant,. Missing values in mass spectrometry based metabolomics: an undervalued step in the data processing pipeline. Metabolomics 2012, 8, S161.
    • (2012) Metabolomics , vol.8 , pp. S161
    • Hrydziuszko, O.1    Viant, M.R.2
  • 43
    • 0032857711 scopus 로고    scopus 로고
    • Reversed-phase liquid chromatographic separation of complex samples by optimizing temperature and gradient time; I. Peak capacity limitations
    • J. W. Dolan, L. R. Snyder, N. M. Djordjevic, D. W. Hill, T. G. Waeghe,. Reversed-phase liquid chromatographic separation of complex samples by optimizing temperature and gradient time; I. Peak capacity limitations. J. Chromatogr. A 1999, 857, 1.
    • (1999) J. Chromatogr. A , vol.857 , pp. 1
    • Dolan, J.W.1    Snyder, L.R.2    Djordjevic, N.M.3    Hill, D.W.4    Waeghe, T.G.5
  • 44
    • 48949103703 scopus 로고    scopus 로고
    • Evaluation of the repeatability of ultra-performance liquid chromatography-TOF-MS for global metabolic profiling of human urine samples
    • H. G. Gika, E. Macpherson, G. A. Theodoridis, I. D. Wilson,. Evaluation of the repeatability of ultra-performance liquid chromatography-TOF-MS for global metabolic profiling of human urine samples. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2008, 871, 299.
    • (2008) J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. , vol.871 , pp. 299
    • Gika, H.G.1    MacPherson, E.2    Theodoridis, G.A.3    Wilson, I.D.4
  • 45
    • 48749121080 scopus 로고    scopus 로고
    • A sample extraction and chromatographic strategy for increasing LC/MS detection coverage of the erythrocyte metabolome
    • T. R. Sana, K. Waddell, S. M. Fischer,. A sample extraction and chromatographic strategy for increasing LC/MS detection coverage of the erythrocyte metabolome. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2008, 871, 314.
    • (2008) J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. , vol.871 , pp. 314
    • Sana, T.R.1    Waddell, K.2    Fischer, S.M.3
  • 46
    • 84915809442 scopus 로고    scopus 로고
    • Comparison of peak-picking workflows for untargeted liquid chromatography/high-resolution mass spectrometry metabolomics data analysis
    • A. Rafiei, L. Sleno,. Comparison of peak-picking workflows for untargeted liquid chromatography/high-resolution mass spectrometry metabolomics data analysis. Rapid Commun. Mass Spectrom. 2015, 29, 119.
    • (2015) Rapid Commun. Mass Spectrom. , vol.29 , pp. 119
    • Rafiei, A.1    Sleno, L.2
  • 47
    • 78651318867 scopus 로고    scopus 로고
    • Sarcosine in prostate cancer tissue is not a differential metabolite for prostate cancer aggressiveness and biochemical progression
    • F. Jentzmik, C. Stephan, M. Lein, K. Miller, B. Kamlage, B. Bethan, G. Kristiansen, K. Jung,. Sarcosine in prostate cancer tissue is not a differential metabolite for prostate cancer aggressiveness and biochemical progression. J. Urol. 2010, 185, 706.
    • (2010) J. Urol. , vol.185 , pp. 706
    • Jentzmik, F.1    Stephan, C.2    Lein, M.3    Miller, K.4    Kamlage, B.5    Bethan, B.6    Kristiansen, G.7    Jung, K.8
  • 48
    • 78651292339 scopus 로고    scopus 로고
    • Sarcosine, folate metabolism and prostate cancer - Is there a link?
    • C. Wagner, Z. Luka,. Sarcosine, folate metabolism and prostate cancer-Is there a link? J. Urol. 2010, 185, 385.
    • (2010) J. Urol. , vol.185 , pp. 385
    • Wagner, C.1    Luka, Z.2
  • 50
    • 84924703422 scopus 로고    scopus 로고
    • Unexpected peaks in tandem mass spectra due to reaction of product ions with residual water in mass spectrometer collision cells
    • P. Neta, M. Farahani, Y. Simõn-Manso, Y. Liang, X. Yang, S. E. Stein,. Unexpected peaks in tandem mass spectra due to reaction of product ions with residual water in mass spectrometer collision cells. Rapid Commun. Mass Spectrom. 2014, 28, 2645.
    • (2014) Rapid Commun. Mass Spectrom. , vol.28 , pp. 2645
    • Neta, P.1    Farahani, M.2    Simõn-Manso, Y.3    Liang, Y.4    Yang, X.5    Stein, S.E.6


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