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Volumn 9, Issue 1, 2016, Pages

Construction of a restriction-less, marker-less mutant useful for functional genomic and metabolic engineering of the biofuel producer Clostridium acetobutylicum

Author keywords

5 FU; Cac824I; Clostridium acetobutylicum; FLP; FRT; Gene deletion; Gene replacement; upp; upp gene

Indexed keywords

ACETONE; ALKYLATION; ANTIBIOTICS; BACTERIA; BACTERIOLOGY; BIOFUELS; CHROMOSOMES; CLOSTRIDIUM; DNA SEQUENCES; ENCODING (SYMBOLS); GENE ENCODING; INDUSTRIAL CHEMICALS; METABOLIC ENGINEERING; METABOLISM; ORGANIC SOLVENTS; YEAST;

EID: 84956996943     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-016-0432-2     Document Type: Article
Times cited : (43)

References (32)
  • 2
    • 0029846031 scopus 로고    scopus 로고
    • Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824
    • 1:CAS:528:DyaK28Xlt1GmtLg%3D
    • Green EM, Boynton ZL, Harris LM, Rudolph FB, Papoutsakis ET, Bennett GN. Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824. Microbiology. 1996;142(Pt 8):2079-86.
    • (1996) Microbiology , vol.142 , pp. 2079-2086
    • Green, E.M.1    Boynton, Z.L.2    Harris, L.M.3    Rudolph, F.B.4    Papoutsakis, E.T.5    Bennett, G.N.6
  • 3
    • 2042480078 scopus 로고    scopus 로고
    • Inactivation of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824
    • Green EM, Bennett GN. Inactivation of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824. Appl Biochem Biotechnol. 1996;57-58:213-21.
    • (1996) Appl Biochem Biotechnol , vol.57-58 , pp. 213-221
    • Green, E.M.1    Bennett, G.N.2
  • 4
    • 0036282456 scopus 로고    scopus 로고
    • Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824
    • 1:CAS:528:DC%2BD38Xkslyrsbo%3D
    • Harris LM, Welker NE, Papoutsakis ET. Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824. J Bacteriol. 2002;184(13):3586-97.
    • (2002) J Bacteriol , vol.184 , Issue.13 , pp. 3586-3597
    • Harris, L.M.1    Welker, N.E.2    Papoutsakis, E.T.3
  • 5
    • 84868649467 scopus 로고    scopus 로고
    • Novel system for efficient isolation of Clostridium double-crossover allelic exchange mutants enabling markerless chromosomal gene deletions and DNA integration
    • 1:CAS:528:DC%2BC38Xhs1eisrzJ
    • Al-Hinai MA, Fast AG, Papoutsakis ET. Novel system for efficient isolation of Clostridium double-crossover allelic exchange mutants enabling markerless chromosomal gene deletions and DNA integration. Appl Environ Microbiol. 2012;78(22):8112-21.
    • (2012) Appl Environ Microbiol , vol.78 , Issue.22 , pp. 8112-8121
    • Al-Hinai, M.A.1    Fast, A.G.2    Papoutsakis, E.T.3
  • 6
    • 79751502382 scopus 로고    scopus 로고
    • Regulation of transcription by unnatural amino acids
    • 1:CAS:528:DC%2BC3MXmsFGisQ%3D%3D
    • Liu CC, Qi L, Yanofsky C, Arkin AP. Regulation of transcription by unnatural amino acids. Nat Biotechnol. 2011;29:164-8.
    • (2011) Nat Biotechnol , vol.29 , pp. 164-168
    • Liu, C.C.1    Qi, L.2    Yanofsky, C.3    Arkin, A.P.4
  • 7
    • 84860362257 scopus 로고    scopus 로고
    • Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker
    • 1:CAS:528:DC%2BC38Xmt12jsLc%3D
    • Heap JT, Ehsaan M, Cooksley CM, Ng YK, Cartman ST, Winzer K, Minton NP. Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker. Nucleic Acids Res. 2012;40(8):e59.
    • (2012) Nucleic Acids Res , vol.40 , Issue.8 , pp. e59
    • Heap, J.T.1    Ehsaan, M.2    Cooksley, C.M.3    Ng, Y.K.4    Cartman, S.T.5    Winzer, K.6    Minton, N.P.7
  • 8
    • 34548124567 scopus 로고    scopus 로고
    • The ClosTron: A universal gene knock-out system for the genus Clostridium
    • 1:CAS:528:DC%2BD2sXpsFKjsLk%3D
    • Heap JT, Pennington OJ, Cartman ST, Carter GP, Minton NP. The ClosTron: a universal gene knock-out system for the genus Clostridium. J Microbiol Methods. 2007;70(3):452-64.
    • (2007) J Microbiol Methods , vol.70 , Issue.3 , pp. 452-464
    • Heap, J.T.1    Pennington, O.J.2    Cartman, S.T.3    Carter, G.P.4    Minton, N.P.5
  • 9
    • 36248966555 scopus 로고    scopus 로고
    • Targeted gene disruption by use of a group II intron (targetron) vector in Clostridium acetobutylicum
    • 1:CAS:528:DC%2BD2sXhtlWjsbvI
    • Shao L, Hu S, Yang Y, Gu Y, Chen J, Yang Y, Jiang W, Yang S. Targeted gene disruption by use of a group II intron (targetron) vector in Clostridium acetobutylicum. Cell Res. 2007;17(11):963-5.
    • (2007) Cell Res , vol.17 , Issue.11 , pp. 963-965
    • Shao, L.1    Hu, S.2    Yang, Y.3    Gu, Y.4    Chen, J.5    Yang, Y.6    Jiang, W.7    Yang, S.8
  • 11
    • 0027477171 scopus 로고
    • In vivo methylation in Escherichia coli by the Bacillus subtilis phage phi 3T i methyltransferase to protect plasmids from restriction upon transformation of Clostridium acetobutylicum ATCC 824
    • 1:CAS:528:DyaK3sXktVCkurY%3D
    • Mermelstein LD, Papoutsakis ET. In vivo methylation in Escherichia coli by the Bacillus subtilis phage phi 3T I methyltransferase to protect plasmids from restriction upon transformation of Clostridium acetobutylicum ATCC 824. Appl Environ Microbiol. 1993;59(4):1077-81.
    • (1993) Appl Environ Microbiol , vol.59 , Issue.4 , pp. 1077-1081
    • Mermelstein, L.D.1    Papoutsakis, E.T.2
  • 12
    • 0036034078 scopus 로고    scopus 로고
    • A new mutation delivery system for genome-scale approaches in Bacillus subtilis
    • 1:CAS:528:DC%2BD38XotFSiu7c%3D
    • Fabret C, Ehrlich SD, Noirot P. A new mutation delivery system for genome-scale approaches in Bacillus subtilis. Mol Microbiol. 2002;46(1):25-36.
    • (2002) Mol Microbiol , vol.46 , Issue.1 , pp. 25-36
    • Fabret, C.1    Ehrlich, S.D.2    Noirot, P.3
  • 13
    • 84961287161 scopus 로고    scopus 로고
    • New England Biolabs I. Method for cloning and expression of AcuI restriction endonuclease and AcuI methylase
    • US patent No.7,011,966
    • Samuelson J.,Xu S.,O'Loane D.,New England Biolabs I. Method for cloning and expression of AcuI restriction endonuclease and AcuI methylase, E. Coli 2006 US patent No.7,011,966
    • (2006) E. Coli
    • Samuelson, J.1    Xu, S.2    O'Loane, D.3
  • 14
    • 0026468485 scopus 로고
    • Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes
    • 1:CAS:528:DyaK3sXks1Cntrg%3D
    • Janulaitis A, Vaisvila R, Timinskas A, Klimasauskas S, Butkus V. Cloning and sequence analysis of the genes coding for Eco57I type IV restriction-modification enzymes. Nucleic Acids Res. 1992;20(22):6051-6.
    • (1992) Nucleic Acids Res , vol.20 , Issue.22 , pp. 6051-6056
    • Janulaitis, A.1    Vaisvila, R.2    Timinskas, A.3    Klimasauskas, S.4    Butkus, V.5
  • 15
    • 84952802569 scopus 로고    scopus 로고
    • A quantitative system-scale characterization of the metabolism of Clostridium acetobutylicum
    • Yoo M, Bestel-Corre G, Croux C, Riviere A, Meynial-Salles I, Soucaille P. A quantitative system-scale characterization of the metabolism of Clostridium acetobutylicum. MBio 2015;6(6):e01808-15.
    • (2015) MBio , vol.6 , Issue.6 , pp. e01808-e01815
    • Yoo, M.1    Bestel-Corre, G.2    Croux, C.3    Riviere, A.4    Meynial-Salles, I.5    Soucaille, P.6
  • 16
    • 0023645099 scopus 로고
    • Plasmid replication stimulates DNA recombination in Bacillus subtilis
    • 1:CAS:528:DyaL2sXkvFWjtL8%3D
    • Noirot P, Petit MA, Ehrlich SD. Plasmid replication stimulates DNA recombination in Bacillus subtilis. J Mol Biol. 1987;196(1):39-48.
    • (1987) J Mol Biol , vol.196 , Issue.1 , pp. 39-48
    • Noirot, P.1    Petit, M.A.2    Ehrlich, S.D.3
  • 17
    • 0026557514 scopus 로고
    • Induction of DNA amplification in the Bacillus subtilis chromosome
    • 1:CAS:528:DyaK38Xit12mtr4%3D
    • Petit MA, Mesas JM, Noirot P, Morel-Deville F, Ehrlich SD. Induction of DNA amplification in the Bacillus subtilis chromosome. EMBO J. 1992;11(4):1317-26.
    • (1992) EMBO J , vol.11 , Issue.4 , pp. 1317-1326
    • Petit, M.A.1    Mesas, J.M.2    Noirot, P.3    Morel-Deville, F.4    Ehrlich, S.D.5
  • 18
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • 1:CAS:528:DC%2BD3cXktFais7c%3D
    • Datsenko KA, Wanner BL. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci USA. 2000;97(12):6640-5.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.12 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 19
    • 9244240974 scopus 로고    scopus 로고
    • Consecutive gene deletions in Mycobacterium smegmatis using the yeast FLP recombinase
    • 1:CAS:528:DC%2BD2cXhtVahsrvP
    • Stephan J, Stemmer V, Niederweis M. Consecutive gene deletions in Mycobacterium smegmatis using the yeast FLP recombinase. Gene. 2004;343(1):181-90.
    • (2004) Gene , vol.343 , Issue.1 , pp. 181-190
    • Stephan, J.1    Stemmer, V.2    Niederweis, M.3
  • 20
    • 57049169148 scopus 로고    scopus 로고
    • Metabolic engineering of the non-sporulating, non-solventogenic Clostridium acetobutylicum strain M5 to produce butanol without acetone demonstrate the robustness of the acid-formation pathways and the importance of the electron balance
    • 1:CAS:528:DC%2BD1cXhsVKrt7jN
    • Sillers R, Chow A, Tracy B, Papoutsakis ET. Metabolic engineering of the non-sporulating, non-solventogenic Clostridium acetobutylicum strain M5 to produce butanol without acetone demonstrate the robustness of the acid-formation pathways and the importance of the electron balance. Metab Eng. 2008;10(6):321.
    • (2008) Metab Eng , vol.10 , Issue.6 , pp. 321
    • Sillers, R.1    Chow, A.2    Tracy, B.3    Papoutsakis, E.T.4
  • 21
    • 84869014233 scopus 로고    scopus 로고
    • Targeted mutagenesis of the Clostridium acetobutylicum acetone-butanol-ethanol fermentation pathway
    • 1:CAS:528:DC%2BC38Xhs1Cjs7rP
    • Cooksley CM, Zhang Y, Wang H, Redl S, Winzer K, Minton NP. Targeted mutagenesis of the Clostridium acetobutylicum acetone-butanol-ethanol fermentation pathway. Metab Eng. 2012;14(6):630-41.
    • (2012) Metab Eng , vol.14 , Issue.6 , pp. 630-641
    • Cooksley, C.M.1    Zhang, Y.2    Wang, H.3    Redl, S.4    Winzer, K.5    Minton, N.P.6
  • 23
    • 85035394005 scopus 로고    scopus 로고
    • Metabolic engineering of Clostridium acetobutylicum for enhanced production of n-butanol
    • Soucaille P. Metabolic engineering of Clostridium acetobutylicum for enhanced production of n-butanol. International patent application WO2008052973.
    • International Patent Application WO2008052973
    • Soucaille, P.1
  • 24
    • 0028201690 scopus 로고
    • Regulation of carbon and electron flow in Clostridium acetobutylicum grown in chemostat culture at neutral pH on mixtures of glucose and glycerol
    • 1:CAS:528:DyaK2cXitl2rtL8%3D
    • Vasconcelos I, Girbal L, Soucaille P. Regulation of carbon and electron flow in Clostridium acetobutylicum grown in chemostat culture at neutral pH on mixtures of glucose and glycerol. J Bacteriol. 1994;176(5):1443-50.
    • (1994) J Bacteriol , vol.176 , Issue.5 , pp. 1443-1450
    • Vasconcelos, I.1    Girbal, L.2    Soucaille, P.3
  • 25
    • 0028143740 scopus 로고
    • Metabolic flexibility of Clostridium acetobutylicum in response to met
    • 1:CAS:528:DyaK2MXktVSlsrs%3D
    • Peguin S, Goma G, Delorme P, Soucaille P. Metabolic flexibility of Clostridium acetobutylicum in response to met. Appl Microbiol Biotechnol. 1994;42(4):611-6.
    • (1994) Appl Microbiol Biotechnol , vol.42 , Issue.4 , pp. 611-616
    • Peguin, S.1    Goma, G.2    Delorme, P.3    Soucaille, P.4
  • 26
    • 0000158375 scopus 로고
    • Thiolase from Clostridium acetobutylicum ATCC 824 and its role in the synthesis of acids and solvents
    • 1:CAS:528:DyaL1MXjsFyksQ%3D%3D
    • Wiesenborn DP, Rudolph FB, Papoutsakis ET. Thiolase from Clostridium acetobutylicum ATCC 824 and its role in the synthesis of acids and solvents. Appl Environ Microbiol. 1988;54(11):2717-22.
    • (1988) Appl Environ Microbiol , vol.54 , Issue.11 , pp. 2717-2722
    • Wiesenborn, D.P.1    Rudolph, F.B.2    Papoutsakis, E.T.3
  • 27
    • 14744283496 scopus 로고
    • Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824
    • 1:CAS:528:DyaK38Xhslans7k%3D
    • Mermelstein LD, Welker NE, Bennett GN, Papoutsakis ET. Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824. Biotechnology (NY). 1992;10(2):190-5.
    • (1992) Biotechnology (NY) , vol.10 , Issue.2 , pp. 190-195
    • Mermelstein, L.D.1    Welker, N.E.2    Bennett, G.N.3    Papoutsakis, E.T.4
  • 29
    • 0029065955 scopus 로고
    • Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant
    • 1:CAS:528:DyaK2MXmvFClsb8%3D
    • Cherepanov PP, Wackernagel W. Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant. Gene. 1995;158(1):9-14.
    • (1995) Gene , vol.158 , Issue.1 , pp. 9-14
    • Cherepanov, P.P.1    Wackernagel, W.2
  • 31
    • 17444400486 scopus 로고    scopus 로고
    • New tool for metabolic pathway engineering in Escherichia coli: One-step method to modulate expression of chromosomal genes
    • 1:CAS:528:DC%2BD2MXjsVyjsr0%3D
    • Meynial-Salles I, Cervin MA, Soucaille P. New tool for metabolic pathway engineering in Escherichia coli: one-step method to modulate expression of chromosomal genes. Appl Environ Microbiol. 2005;71(4):2140-4.
    • (2005) Appl Environ Microbiol , vol.71 , Issue.4 , pp. 2140-2144
    • Meynial-Salles, I.1    Cervin, M.A.2    Soucaille, P.3
  • 32
    • 0037966959 scopus 로고    scopus 로고
    • Molecular characterization of the 1,3-propanediol (1,3-PD) operon of Clostridium butyricum
    • 1:CAS:528:DC%2BD3sXjs1yju7c%3D
    • Raynaud C, Sarcabal P, Meynial-Salles I, Croux C, Soucaille P. Molecular characterization of the 1,3-propanediol (1,3-PD) operon of Clostridium butyricum. Proc Natl Acad Sci USA. 2003;100(9):5010-5.
    • (2003) Proc Natl Acad Sci USA , vol.100 , Issue.9 , pp. 5010-5015
    • Raynaud, C.1    Sarcabal, P.2    Meynial-Salles, I.3    Croux, C.4    Soucaille, P.5


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