-
1
-
-
84868649467
-
A novel system for efficient isolation of double-crossover allelic exchange mutants in Clostridium enabling markerless chromosomal gene deletions and DNA integration
-
PID: 22983967, COI: 1:CAS:528:DC%2BC38Xhs1eisrzJ
-
Al-Hinai M, Fast A, Papoutsakis E (2012) A novel system for efficient isolation of double-crossover allelic exchange mutants in Clostridium enabling markerless chromosomal gene deletions and DNA integration. Appl Environ Microbiol 78:8112–8121. doi:10.1128/AEM.02214-12
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 8112-8121
-
-
Al-Hinai, M.1
Fast, A.2
Papoutsakis, E.3
-
2
-
-
0021062517
-
Level of enzymes involved in acetate, butyrate, acetone and butanol formation by Clostridium acetobutylicum
-
COI: 1:CAS:528:DyaL2cXhsleisLs%3D
-
Andersch W, Bahl H, Gottschalk G (1983) Level of enzymes involved in acetate, butyrate, acetone and butanol formation by Clostridium acetobutylicum. Appl Microbiol Biotechnol 18:327–332. doi:10.1007/BF00504740
-
(1983)
Appl Microbiol Biotechnol
, vol.18
, pp. 327-332
-
-
Andersch, W.1
Bahl, H.2
Gottschalk, G.3
-
3
-
-
0020358856
-
Continuous production of acetone and butanol by Clostridium acetobutylicum in a two-stage phosphate limited chemostat
-
COI: 1:CAS:528:DyaL3sXjsFaj
-
Bahl H, Andersch W, Gottschalk G (1982) Continuous production of acetone and butanol by Clostridium acetobutylicum in a two-stage phosphate limited chemostat. Appl Microbiol Biotechnol 15:201–205. doi:10.1007/BF00499955
-
(1982)
Appl Microbiol Biotechnol
, vol.15
, pp. 201-205
-
-
Bahl, H.1
Andersch, W.2
Gottschalk, G.3
-
4
-
-
0022480123
-
Nutritional factors affecting the ratio of solvents produced by Clostridium acetobutylicum
-
PID: 16347104, COI: 1:CAS:528:DyaL28XkslGlsrY%3D
-
Bahl H, Gottwald M, Kuhn A, Rale V, Andersch W, Gottschalk G (1986) Nutritional factors affecting the ratio of solvents produced by Clostridium acetobutylicum. Appl Environ Microbiol 52:169–172
-
(1986)
Appl Environ Microbiol
, vol.52
, pp. 169-172
-
-
Bahl, H.1
Gottwald, M.2
Kuhn, A.3
Rale, V.4
Andersch, W.5
Gottschalk, G.6
-
5
-
-
84860490976
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
-
PID: 22102576, COI: 1:CAS:528:DC%2BC3MXhs12htb%2FF
-
Caspi R, Altman T, Dreher K, Fulcher C, Subhraveti P, Keseler I, Kothari A, Krummenacker M, Latendresse M, Mueller L, Ong Q, Paley S, Pujar A, Shearer A, Travers M, Weerasinghe D, Zhang P, Karp P (2012) The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. Nucleic Acids Res 40:D742–D753. doi:10.1093/nar/gkr1014
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D742-D753
-
-
Caspi, R.1
Altman, T.2
Dreher, K.3
Fulcher, C.4
Subhraveti, P.5
Keseler, I.6
Kothari, A.7
Krummenacker, M.8
Latendresse, M.9
Mueller, L.10
Ong, Q.11
Paley, S.12
Pujar, A.13
Shearer, A.14
Travers, M.15
Weerasinghe, D.16
Zhang, P.17
Karp, P.18
-
6
-
-
0024278885
-
Nature and significance of oscillatory behavior during solvent production by Clostridium acetobutylicum in continuous culture
-
PID: 18587752, COI: 1:CAS:528:DyaL1cXlsVOqt7o%3D
-
Clarke K, Hansford G, Jones D (1988) Nature and significance of oscillatory behavior during solvent production by Clostridium acetobutylicum in continuous culture. Biotechnol Bioeng 32:538–544. doi:10.1002/bit.260320417
-
(1988)
Biotechnol Bioeng
, vol.32
, pp. 538-544
-
-
Clarke, K.1
Hansford, G.2
Jones, D.3
-
7
-
-
84869014233
-
Targeted mutagenesis of the Clostridium acetobutylicum acetone-butanol-ethanol fermentation pathway
-
PID: 22982601, COI: 1:CAS:528:DC%2BC38Xhs1Cjs7rP
-
Cooksley C, Zhang Y, Wang H, Redl S, Winzer K, Minton N (2012) Targeted mutagenesis of the Clostridium acetobutylicum acetone-butanol-ethanol fermentation pathway. Metab Eng 14:630–641. doi:10.1016/j.ymben.2012.09.001
-
(2012)
Metab Eng
, vol.14
, pp. 630-641
-
-
Cooksley, C.1
Zhang, Y.2
Wang, H.3
Redl, S.4
Winzer, K.5
Minton, N.6
-
8
-
-
77249139318
-
Machine learning methods for metabolic pathway prediction
-
Dale J, Popescu L, Karp P (2010) Machine learning methods for metabolic pathway prediction. BMC Bioinforma 11:15. doi:10.1186/1471-2105-11-15
-
(2010)
BMC Bioinforma
, vol.11
, pp. 15
-
-
Dale, J.1
Popescu, L.2
Karp, P.3
-
9
-
-
0033156380
-
Metabolic flux analysis elucidates the importance of the acid-formation pathways in regulating solvent production by Clostridium acetobutylicum
-
PID: 10937935, COI: 1:CAS:528:DyaK1MXltlClt78%3D
-
Desai R, Harris L, Welker N, Papoutsakis E (1999) Metabolic flux analysis elucidates the importance of the acid-formation pathways in regulating solvent production by Clostridium acetobutylicum. Metab Eng 1:206–213. doi:10.1006/mben.1999.0118
-
(1999)
Metab Eng
, vol.1
, pp. 206-213
-
-
Desai, R.1
Harris, L.2
Welker, N.3
Papoutsakis, E.4
-
10
-
-
38349038031
-
Formation of solvents in Clostridia
-
CRC Press, Boca Raton:
-
Dürre P, Dürre (2005) Formation of solvents in Clostridia. In: Handbook on Costridia. CRC Press, Boca Raton, pp 671–693
-
(2005)
Handbook on Costridia
, pp. 671-693
-
-
Dürre, P.1
Dürre2
-
11
-
-
38149030843
-
Biobutanol: an attractive biofuel
-
PID: 17924389
-
Dürre P (2007) Biobutanol: an attractive biofuel. Biotechnol J 2(12):1525–1534. doi:10.1002/biot.200700168
-
(2007)
Biotechnol J
, vol.2
, Issue.12
, pp. 1525-1534
-
-
Dürre, P.1
-
12
-
-
84982586755
-
Solventogenic enzymes of Clostridium acetobutylicum: catalytic properties, genetic organization, and transcriptional regulation
-
PID: 7576767
-
Dürre P, Fischer RJ, Kuhn A, Lorenz K, Schreiber W, Stürzenhofecker B, Ullmann S, Winzer K, Sauer U (1995) Solventogenic enzymes of Clostridium acetobutylicum: catalytic properties, genetic organization, and transcriptional regulation. FEMS Microbiol Rev 17:251–262. doi:10.1111/j.1574-6976.1995.tb00209.x
-
(1995)
FEMS Microbiol Rev
, vol.17
, pp. 251-262
-
-
Dürre, P.1
Fischer, R.J.2
Kuhn, A.3
Lorenz, K.4
Schreiber, W.5
Stürzenhofecker, B.6
Ullmann, S.7
Winzer, K.8
Sauer, U.9
-
13
-
-
53849098363
-
The two-component system PhoPR of Clostridium acetobutylicum is involved in phosphate-dependent gene regulation
-
PID: 18689481, COI: 1:CAS:528:DC%2BD1cXht1Chtr7M
-
Fiedler T, Mix M, Meyer U, Mikkat S, Glocker M, Bahl H, Fischer RJ (2008) The two-component system PhoPR of Clostridium acetobutylicum is involved in phosphate-dependent gene regulation. J Bacteriol 190:6559–6567. doi:10.1128/JB.00574-08
-
(2008)
J Bacteriol
, vol.190
, pp. 6559-6567
-
-
Fiedler, T.1
Mix, M.2
Meyer, U.3
Mikkat, S.4
Glocker, M.5
Bahl, H.6
Fischer, R.J.7
-
14
-
-
33746609376
-
Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH
-
PID: 16855236, COI: 1:CAS:528:DC%2BD28Xns1Cntr4%3D
-
Fischer RJ, Oehmcke S, Meyer U, Mix M, Schwarz K, Fiedler T, Bahl H (2006) Transcription of the pst operon of Clostridium acetobutylicum is dependent on phosphate concentration and pH. J Bacteriol 188:5469–5478. doi:10.1128/JB.00491-06
-
(2006)
J Bacteriol
, vol.188
, pp. 5469-5478
-
-
Fischer, R.J.1
Oehmcke, S.2
Meyer, U.3
Mix, M.4
Schwarz, K.5
Fiedler, T.6
Bahl, H.7
-
15
-
-
0036180998
-
Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824
-
PID: 11790753, COI: 1:CAS:528:DC%2BD38XntVGnsw%3D%3D
-
Fontaine L, Meynial-Salles I, Girbal L, Yang X, Croux C, Soucaille P (2002) Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824. J Bacteriol 184:821–830. doi:10.1128/JB.184.3.821-830.2002
-
(2002)
J Bacteriol
, vol.184
, pp. 821-830
-
-
Fontaine, L.1
Meynial-Salles, I.2
Girbal, L.3
Yang, X.4
Croux, C.5
Soucaille, P.6
-
16
-
-
0028036995
-
Regulation of Clostridium acetobutylicum metabolism as revealed by mixed-substrate steady-state continuous cultures: role of NADH/NAD ratio and ATP pool
-
PID: 7961393, COI: 1:CAS:528:DyaK2cXmslKntLw%3D
-
Girbal L, Soucaille P (1994) Regulation of Clostridium acetobutylicum metabolism as revealed by mixed-substrate steady-state continuous cultures: role of NADH/NAD ratio and ATP pool. J Bacteriol 176:6433–6438
-
(1994)
J Bacteriol
, vol.176
, pp. 6433-6438
-
-
Girbal, L.1
Soucaille, P.2
-
17
-
-
78650924319
-
Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum
-
PID: 21212688, COI: 1:CAS:528:DC%2BC3MXisl2rtr8%3D
-
Grimmler C, Janssen H, Krauße D, Fischer RJ, Bahl H, Dürre P, Liebl W, Ehrenreich A (2011) Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum. J Mol Microbiol Biotechnol 20:1–15. doi:10.1159/000320973
-
(2011)
J Mol Microbiol Biotechnol
, vol.20
, pp. 1-15
-
-
Grimmler, C.1
Janssen, H.2
Krauße, D.3
Fischer, R.J.4
Bahl, H.5
Dürre, P.6
Liebl, W.7
Ehrenreich, A.8
-
18
-
-
0026494903
-
Physiological events in Clostridium acetobutylicum during the shift from acidogenesis to solventogenesis in continuous culture and presentation of a model for shift induction
-
PID: 16348821, COI: 1:CAS:528:DyaK3sXjsFKnsw%3D%3D
-
Grupe H, Gottschalk G (1992) Physiological events in Clostridium acetobutylicum during the shift from acidogenesis to solventogenesis in continuous culture and presentation of a model for shift induction. Appl Environ Microbiol 58:3896–3902
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 3896-3902
-
-
Grupe, H.1
Gottschalk, G.2
-
19
-
-
79960743374
-
Acetone production in solventogenic Clostridium species: new insights from non-enzymatic decarboxylation of acetoacetate
-
PID: 21533580, COI: 1:CAS:528:DC%2BC3MXovFCmsbo%3D
-
Han B, Gopalan V, Ezeji T (2011) Acetone production in solventogenic Clostridium species: new insights from non-enzymatic decarboxylation of acetoacetate. Appl Microbiol Biotechnol 91:565–576. doi:10.1007/s00253-011-3276-5
-
(2011)
Appl Microbiol Biotechnol
, vol.91
, pp. 565-576
-
-
Han, B.1
Gopalan, V.2
Ezeji, T.3
-
20
-
-
0021261020
-
Intermediary metabolism in Clostridium acetobutylicum: levels of enzymes involved in the formation of acetate and butyrate
-
PID: 16346566, COI: 1:CAS:528:DyaL2cXksFWnuro%3D
-
Hartmanis M, Gatenbeck S (1984) Intermediary metabolism in Clostridium acetobutylicum: levels of enzymes involved in the formation of acetate and butyrate. Appl Environ Microbiol 47:1277–1283
-
(1984)
Appl Environ Microbiol
, vol.47
, pp. 1277-1283
-
-
Hartmanis, M.1
Gatenbeck, S.2
-
21
-
-
0021153497
-
Uptake and activation of acetate and butyrate in Clostridium acetobutylicum
-
COI: 1:CAS:528:DyaL2cXlt1KmtLg%3D
-
Hartmanis M, Klason T, Gatenbeck S (1984) Uptake and activation of acetate and butyrate in Clostridium acetobutylicum. Appl Microbiol Biotechnol 20:66–71. doi:10.1007/BF00254648
-
(1984)
Appl Microbiol Biotechnol
, vol.20
, pp. 66-71
-
-
Hartmanis, M.1
Klason, T.2
Gatenbeck, S.3
-
22
-
-
78651478840
-
A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture
-
PID: 21247470
-
Haus S, Jabbari S, Millat T, Janssen H, Fischer RJ, Bahl H, King J, Wolkenhauer O (2011) A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture. BMC Syst Biol 5:10. doi:10.1186/1752-0509-5-10
-
(2011)
BMC Syst Biol
, vol.5
, pp. 10
-
-
Haus, S.1
Jabbari, S.2
Millat, T.3
Janssen, H.4
Fischer, R.J.5
Bahl, H.6
King, J.7
Wolkenhauer, O.8
-
23
-
-
66249136708
-
The origin of the electrostatic perturbation in acetoacetate decarboxylase
-
PID: 19458715, COI: 1:CAS:528:DC%2BD1MXmtFKmt7s%3D
-
Ho MC, Menetret JF, Tsuruta H, Allen K (2009) The origin of the electrostatic perturbation in acetoacetate decarboxylase. Nature 459:393–397. doi:10.1038/nature07938
-
(2009)
Nature
, vol.459
, pp. 393-397
-
-
Ho, M.C.1
Menetret, J.F.2
Tsuruta, H.3
Allen, K.4
-
24
-
-
27144469038
-
Continuous culture—making a comeback?
-
COI: 1:CAS:528:DC%2BD2MXhtFeit77J
-
Hoskisson P, Hobbs G (2005) Continuous culture—making a comeback? Microbiol 151:3153–3159. doi:10.1099/mic.0.27924-0
-
(2005)
Microbiol
, vol.151
, pp. 3153-3159
-
-
Hoskisson, P.1
Hobbs, G.2
-
25
-
-
0344363060
-
Comparison between in vivo and in vitro enzyme activities in continuous and batch fermentations of Clostridium acetobutylicum
-
Hüsemann M, Papoutsakis E (1989) Comparison between in vivo and in vitro enzyme activities in continuous and batch fermentations of Clostridium acetobutylicum. Appl Microbiol Biotechnol 30:585–595. doi:10.1007/BF00255364
-
(1989)
Appl Microbiol Biotechnol
, vol.30
, pp. 585-595
-
-
Hüsemann, M.1
Papoutsakis, E.2
-
26
-
-
77955559194
-
A proteomic and transcriptional view of acidogenesis and solventogenesis in Clostridium acetobutylicum in a chemostat culture
-
PID: 20617312, COI: 1:CAS:528:DC%2BC3cXptlWqsr8%3D
-
Janssen H, Döring C, Ehrenreich A, Voigt B, Hecker M, Bahl H, Fischer RJ (2010) A proteomic and transcriptional view of acidogenesis and solventogenesis in Clostridium acetobutylicum in a chemostat culture. Appl Microbiol Biotechnol 87:2209–2226. doi:10.1007/s00253-010-2741-x
-
(2010)
Appl Microbiol Biotechnol
, vol.87
, pp. 2209-2226
-
-
Janssen, H.1
Döring, C.2
Ehrenreich, A.3
Voigt, B.4
Hecker, M.5
Bahl, H.6
Fischer, R.J.7
-
27
-
-
84865423798
-
A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum—solvent stress caused by a transient n-butanol pulse
-
PID: 22537853, COI: 1:CAS:528:DC%2BC38XmvFKmsbk%3D
-
Janssen H, Grimmler C, Ehrenreich A, Bahl H, Fischer RJ (2012) A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum—solvent stress caused by a transient n-butanol pulse. J Biotechnol 161:354–365. doi:10.1016/j.jbiotec.2012.03.027
-
(2012)
J Biotechnol
, vol.161
, pp. 354-365
-
-
Janssen, H.1
Grimmler, C.2
Ehrenreich, A.3
Bahl, H.4
Fischer, R.J.5
-
28
-
-
0022970603
-
Acetone-butanol fermentation revisited
-
PID: 3540574, COI: 1:CAS:528:DyaL2sXkvVGltg%3D%3D
-
Jones D, Woods D (1986) Acetone-butanol fermentation revisited. Microbiol Rev 50:484–524
-
(1986)
Microbiol Rev
, vol.50
, pp. 484-524
-
-
Jones, D.1
Woods, D.2
-
29
-
-
49049116154
-
The transcriptional program underlying the physiology of clostridial sporulation
-
PID: 18631379
-
Jones S, Paredes C, Tracy B, Cheng N, Sillers R, Senger R, Papoutsakis E (2008) The transcriptional program underlying the physiology of clostridial sporulation. Genome Biol 9:R114. doi:10.1186/gb-2008-9-7-r114
-
(2008)
Genome Biol
, vol.9
, pp. R114
-
-
Jones, S.1
Paredes, C.2
Tracy, B.3
Cheng, N.4
Sillers, R.5
Senger, R.6
Papoutsakis, E.7
-
31
-
-
75849133666
-
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
-
PID: 19955237, COI: 1:CAS:528:DC%2BC3cXhtFeisb4%3D
-
Karp P, Paley S, Krummenacker M, Latendresse M, Dale J, Lee T, Kaipa P, Gilham F, Spaulding A, Popescu L, Altman T, Paulsen I, Keseler I, Caspi R (2010) Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Brief Bioinform 11:40–79. doi:10.1093/bib/bbp043
-
(2010)
Brief Bioinform
, vol.11
, pp. 40-79
-
-
Karp, P.1
Paley, S.2
Krummenacker, M.3
Latendresse, M.4
Dale, J.5
Lee, T.6
Kaipa, P.7
Gilham, F.8
Spaulding, A.9
Popescu, L.10
Altman, T.11
Paulsen, I.12
Keseler, I.13
Caspi, R.14
-
32
-
-
77954580056
-
The global dynamics of RNA stability orchestrates responses to cellular activation
-
PID: 20619007
-
Keene J (2010) The global dynamics of RNA stability orchestrates responses to cellular activation. BMC Biol 8:95. doi:10.1186/1741-7007-8-95
-
(2010)
BMC Biol
, vol.8
, pp. 95
-
-
Keene, J.1
-
33
-
-
84877696851
-
ClosTron-mediated engineering of Clostridium
-
Kuehne S, Minton N (2012) ClosTron-mediated engineering of Clostridium. Bioengineered 3:247–254. doi:10.4161/bioe.21004
-
(2012)
Bioengineered
, vol.3
, pp. 247-254
-
-
Kuehne, S.1
Minton, N.2
-
34
-
-
80052931006
-
ClosTron-mediated engineering of Clostridium
-
PID: 21815105, COI: 1:CAS:528:DC%2BC38XlvVGrsb0%3D
-
Kuehne S, Heap J, Cooksley C, Cartman S, Minton N (2011) ClosTron-mediated engineering of Clostridium. Methods Mol Biol 765:389–407. doi:10.4161/bioe.21004
-
(2011)
Methods Mol Biol
, vol.765
, pp. 389-407
-
-
Kuehne, S.1
Heap, J.2
Cooksley, C.3
Cartman, S.4
Minton, N.5
-
35
-
-
84903753061
-
Elementary mode analysis reveals that Clostridium acetobutylicum modulates its metabolic strategy under external stress
-
PID: 24852622, COI: 1:CAS:528:DC%2BC2cXhtV2qtLnK
-
Kumar M, Saini S, Gayen K (2014) Elementary mode analysis reveals that Clostridium acetobutylicum modulates its metabolic strategy under external stress. Mol BioSyst 10:2090–2105. doi:10.1039/c4mb00126e
-
(2014)
Mol BioSyst
, vol.10
, pp. 2090-2105
-
-
Kumar, M.1
Saini, S.2
Gayen, K.3
-
36
-
-
80052029042
-
Switching Clostridium acetobutylicum to an ethanol producer by disruption of the butyrate/butanol fermentative pathway
-
PID: 21549853, COI: 1:CAS:528:DC%2BC3MXhtV2itb7K
-
Lehmann D, Lütke-Eversloh T (2011) Switching Clostridium acetobutylicum to an ethanol producer by disruption of the butyrate/butanol fermentative pathway. Metab Eng 13:464–473. doi:10.1016/j.ymben.2011.04.006
-
(2011)
Metab Eng
, vol.13
, pp. 464-473
-
-
Lehmann, D.1
Lütke-Eversloh, T.2
-
37
-
-
84862676730
-
Modifying the product pattern of Clostridium acetobutylicum
-
Lehmann D, Hönicke D, Ehrenreich A, Schmidt M, Weuster-Botz D, Bahl H, Lütke-Eversloh T (2012a) Modifying the product pattern of Clostridium acetobutylicum. Appl Microbiol Biotechnol 93:1–12. doi:10.1007/s00253-011-3852-8
-
(2012)
Appl Microbiol Biotechnol
, vol.93
, pp. 1-12
-
-
Lehmann, D.1
Hönicke, D.2
Ehrenreich, A.3
Schmidt, M.4
Weuster-Botz, D.5
Bahl, H.6
Lütke-Eversloh, T.7
-
38
-
-
84871045858
-
New insights into the butyric acid metabolism of Clostridium acetobutylicum
-
PID: 22576943, COI: 1:CAS:528:DC%2BC38Xhs1ektL%2FO
-
Lehmann D, Radomski N, Lütke-Eversloh T (2012b) New insights into the butyric acid metabolism of Clostridium acetobutylicum. Appl Microbiol Biotechnol 96:1325–1339. doi:10.1007/s00253-012-4109-x
-
(2012)
Appl Microbiol Biotechnol
, vol.96
, pp. 1325-1339
-
-
Lehmann, D.1
Radomski, N.2
Lütke-Eversloh, T.3
-
39
-
-
80052625837
-
Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production
-
PID: 21377350
-
Lütke-Eversloh T, Bahl H (2011) Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production. Curr Opin Biotechnol 22:634–647. doi:10.1016/j.copbio.2011.01.011
-
(2011)
Curr Opin Biotechnol
, vol.22
, pp. 634-647
-
-
Lütke-Eversloh, T.1
Bahl, H.2
-
40
-
-
84903585132
-
Application of new metabolic engineering tools for C. acetobutylicum
-
PID: 24816621
-
Lütke-Eversloh T (2014) Application of new metabolic engineering tools for C. acetobutylicum. Appl Microbiol Biotechnol 98:5823–5837. doi:10.1007/s00253-014-5785-5
-
(2014)
Appl Microbiol Biotechnol
, vol.98
, pp. 5823-5837
-
-
Lütke-Eversloh, T.1
-
41
-
-
0004294399
-
-
Pearson/Benjamin Cummings, San Fransisco:
-
Madigan M, Martinko J, Dunlap P, Clark D, Brock T (2009) Brock Biology of Microorganisms, 12th edn. Pearson/Benjamin Cummings, San Fransisco
-
(2009)
Brock Biology of Microorganisms
-
-
Madigan, M.1
Martinko, J.2
Dunlap, P.3
Clark, D.4
Brock, T.5
-
42
-
-
77954604280
-
Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield
-
PID: 20426490, COI: 1:CAS:528:DC%2BC3cXmtFWisLs%3D
-
Mao S, Luo Y, Zhang T, Li J, Bao G, Zhu Y, Chen Z, Zhang Y, Li Y, Ma Y (2010) Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield. J Proteome Res 9:3046–3061. doi:10.1021/pr9012078
-
(2010)
J Proteome Res
, vol.9
, pp. 3046-3061
-
-
Mao, S.1
Luo, Y.2
Zhang, T.3
Li, J.4
Bao, G.5
Zhu, Y.6
Chen, Z.7
Zhang, Y.8
Li, Y.9
Ma, Y.10
-
43
-
-
84860822839
-
Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico
-
PID: 22583864, COI: 1:CAS:528:DC%2BC38XhvVSrsLvK
-
McAnulty M, Yen J, Freedman B, Senger R (2012) Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico. BMC Syst Biol 6:42. doi:10.1186/1752-0509-6-42
-
(2012)
BMC Syst Biol
, vol.6
, pp. 42
-
-
McAnulty, M.1
Yen, J.2
Freedman, B.3
Senger, R.4
-
44
-
-
84879843202
-
Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture
-
COI: 1:CAS:528:DC%2BC3sXhsV2ht77K
-
Millat T, Janssen H, Bahl H, Fischer RJ, Wolkenhauer O (2013a) Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture. Microbial Biotechnol 6:526–539. doi:10.1111/1751-7915.12033
-
(2013)
Microbial Biotechnol
, vol.6
, pp. 526-539
-
-
Millat, T.1
Janssen, H.2
Bahl, H.3
Fischer, R.J.4
Wolkenhauer, O.5
-
45
-
-
84879840909
-
A shift in the dominant phenotype governs the pH-induced switch in Clostridium acetobutylicum
-
PID: 23640360, COI: 1:CAS:528:DC%2BC3sXhtVCqs7vE
-
Millat T, Janssen H, Thorn G, King J, Bahl H, Fischer RJ, Wolkenhauer O (2013b) A shift in the dominant phenotype governs the pH-induced switch in Clostridium acetobutylicum. Appl Microbiol Biotechnol 97:6451–6466. doi:10.1007/s00253-013-4860-7
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 6451-6466
-
-
Millat, T.1
Janssen, H.2
Thorn, G.3
King, J.4
Bahl, H.5
Fischer, R.J.6
Wolkenhauer, O.7
-
46
-
-
80051641411
-
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052
-
PID: 21846360, COI: 1:CAS:528:DC%2BC3MXhtFKms7jL
-
Milne C, Eddy J, Raju R, Ardekani S, Kim PJ, Senger R, Jin YS, Blaschek H, Price N (2011) Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Syst Biol 5:130. doi:10.1186/1752-0509-5-130
-
(2011)
BMC Syst Biol
, vol.5
, pp. 130
-
-
Milne, C.1
Eddy, J.2
Raju, R.3
Ardekani, S.4
Kim, P.J.5
Senger, R.6
Jin, Y.S.7
Blaschek, H.8
Price, N.9
-
47
-
-
0034902930
-
Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum
-
PID: 11466286
-
Nölling J, Breton G, Omelchenko M, Makarova K, Zeng Q, Gibson R, Lee H, Dubois J, Qiu D, Hitti J, GSC Production, Teams B Finishing, Wolf Y, Tatusov R, Sabathe F, Doucette-Stamm L, Soucaille P, Daly M, Bennett G, Koonin E, Smith D (2001) Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J Bacteriol 183:4823–4838. doi:10.1128/JB.183.16.4823-4838.2001
-
(2001)
J Bacteriol
, vol.183
, pp. 4823-4838
-
-
Nölling, J.1
Breton, G.2
Omelchenko, M.3
Makarova, K.4
Zeng, Q.5
Gibson, R.6
Lee, H.7
Dubois, J.8
Qiu, D.9
Hitti, J.10
GSC Production11
Teams B Finishing12
Wolf, Y.13
Tatusov, R.14
Sabathe, F.15
Doucette-Stamm, L.16
Soucaille, P.17
Daly, M.18
Bennett, G.19
Koonin, E.20
Smith, D.21
more..
-
48
-
-
0021383728
-
Equations and calculations for fermentations of butyric acid bacteria
-
PID: 18551704, COI: 1:CAS:528:DyaL2cXhtlOgt7w%3D
-
Papoutsakis E (1984) Equations and calculations for fermentations of butyric acid bacteria. Biotechnol Bioeng 26:174–187. doi:10.1002/bit.260260210
-
(1984)
Biotechnol Bioeng
, vol.26
, pp. 174-187
-
-
Papoutsakis, E.1
-
49
-
-
0026090064
-
Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824
-
PID: 1999395, COI: 1:CAS:528:DyaK3MXhsl2ltrc%3D
-
Petersen D, Welch R, Rudolph F, Bennett G (1991) Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824. J Bacteriol 173:1831–1834
-
(1991)
J Bacteriol
, vol.173
, pp. 1831-1834
-
-
Petersen, D.1
Welch, R.2
Rudolph, F.3
Bennett, G.4
-
50
-
-
0002578530
-
Biochemistry and regulation of acid and solvent formation in clostridia
-
Woods DR, (ed), Butterworth-Heinemann, London:
-
Rogers P, Gottschalk G (1993) Biochemistry and regulation of acid and solvent formation in clostridia. In: Woods DR (ed) The clostridia and biotechnology. Butterworth-Heinemann, London, pp 25–50
-
(1993)
The clostridia and biotechnology
, pp. 25-50
-
-
Rogers, P.1
Gottschalk, G.2
-
51
-
-
0028830955
-
Differential induction of genes related to solvent formation during the shift from acidogenesis to solventogenesis in continuous culture of Clostridium acetobutylicum
-
COI: 1:CAS:528:DyaK2MXivVKlt74%3D
-
Sauer U, Dürre P (1995) Differential induction of genes related to solvent formation during the shift from acidogenesis to solventogenesis in continuous culture of Clostridium acetobutylicum. FEMS Microbiol Lett 125:115–120. doi:10.1111/j.1574-6968.1995.tb07344.x
-
(1995)
FEMS Microbiol Lett
, vol.125
, pp. 115-120
-
-
Sauer, U.1
Dürre, P.2
-
52
-
-
0036146379
-
Changes in protein synthesis and identification of proteins specifically induced during solventogenesis in Clostridium acetobutylicum
-
PID: 11824611, COI: 1:CAS:528:DC%2BD38XosFGmtw%3D%3D
-
Schaffer S, Isci N, Zickner B, Dürre P (2002) Changes in protein synthesis and identification of proteins specifically induced during solventogenesis in Clostridium acetobutylicum. Electrophoresis 23:110–121. doi:10.1002/1522-2683(200201)23:1<110::AID-ELPS110>3.0.CO;2-G
-
(2002)
Electrophoresis
, vol.23
, pp. 110-121
-
-
Schaffer, S.1
Isci, N.2
Zickner, B.3
Dürre, P.4
-
53
-
-
34447256396
-
Kinetic modeling and sensitivity analysis of acetone-butanol-ethanol production
-
PID: 17614153, COI: 1:CAS:528:DC%2BD2sXns1ylu7w%3D
-
Shinto H, Tashiro Y, Yamashita M, Kobayashi G, Sekiguchi T, Hanai T, Kuriya Y, Okamoto M, Sonomoto K (2007) Kinetic modeling and sensitivity analysis of acetone-butanol-ethanol production. J Biotechnol 131:45–56. doi:10.1016/j.jbiotec.2007.05.005
-
(2007)
J Biotechnol
, vol.131
, pp. 45-56
-
-
Shinto, H.1
Tashiro, Y.2
Yamashita, M.3
Kobayashi, G.4
Sekiguchi, T.5
Hanai, T.6
Kuriya, Y.7
Okamoto, M.8
Sonomoto, K.9
-
54
-
-
80053296652
-
Beyond the transcripts: what controls protein variation?
-
PID: 21909242, COI: 1:CAS:528:DC%2BC3MXht1entLnF
-
Straub L (2011) Beyond the transcripts: what controls protein variation? PLoS Biol 9:e1001146. doi:10.1371/journal.pbio.1001146
-
(2011)
PLoS Biol
, vol.9
, pp. e1001146
-
-
Straub, L.1
-
55
-
-
0037608873
-
Antisense RNA downregulation of coenzyme A transferase combined with alcohol-aldehyde dehydrogenase overexpression leads to predominantly alcohologenic Clostridium acetobutylicum fermentations
-
PID: 12775702, COI: 1:CAS:528:DC%2BD3sXks1Kgs7Y%3D
-
Tummala S, Junne S, Papoutsakis E (2003a) Antisense RNA downregulation of coenzyme A transferase combined with alcohol-aldehyde dehydrogenase overexpression leads to predominantly alcohologenic Clostridium acetobutylicum fermentations. J Bacteriol 185:3644–3653. doi:10.1128/JB.185.12.3644-3653.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 3644-3653
-
-
Tummala, S.1
Junne, S.2
Papoutsakis, E.3
-
56
-
-
0037337740
-
Design of antisense RNA constructs for downregulation of the acetone formation pathway of Clostridium acetobutylicum
-
PID: 12618456, COI: 1:CAS:528:DC%2BD3sXitFWkt7c%3D
-
Tummala S, Welker N, Papoutsakis E (2003b) Design of antisense RNA constructs for downregulation of the acetone formation pathway of Clostridium acetobutylicum. J Bacteriol 185:1923–1934. doi:10.1128/JB.185.6.1923-1934.2003
-
(2003)
J Bacteriol
, vol.185
, pp. 1923-1934
-
-
Tummala, S.1
Welker, N.2
Papoutsakis, E.3
-
57
-
-
84863692442
-
Effect of iron limitation and fur gene inactivation on the transcriptional profile of the strict anaerobe Clostridium acetobutylicum
-
COI: 1:CAS:528:DC%2BC38Xht1Cgs7rF
-
Vasileva D, Janssen H, Hönicke D, Ehrenreich A, Bahl H (2012) Effect of iron limitation and fur gene inactivation on the transcriptional profile of the strict anaerobe Clostridium acetobutylicum. Microbiol 158:1918–1929. doi:10.1099/mic.0.056978-0
-
(2012)
Microbiol
, vol.158
, pp. 1918-1929
-
-
Vasileva, D.1
Janssen, H.2
Hönicke, D.3
Ehrenreich, A.4
Bahl, H.5
-
58
-
-
0026563908
-
Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes
-
PID: 1385386, COI: 1:CAS:528:DyaK3sXkvVOksbg%3D
-
Walter K, Bennett G, Papoutsakis E (1992) Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes. J Bacteriol 174:7149–7158
-
(1992)
J Bacteriol
, vol.174
, pp. 7149-7158
-
-
Walter, K.1
Bennett, G.2
Papoutsakis, E.3
-
59
-
-
0024454383
-
Purification and characterization of the NADH-dependent butanol dehydrogenase from Clostridium acetobutylicum (ATCC 824)
-
PID: 2673038, COI: 1:CAS:528:DyaL1MXlt12mtr4%3D
-
Welch R, Rudolph F, Papoutsakis E (1989) Purification and characterization of the NADH-dependent butanol dehydrogenase from Clostridium acetobutylicum (ATCC 824). Arch Biochem Biophys 273:309–318
-
(1989)
Arch Biochem Biophys
, vol.273
, pp. 309-318
-
-
Welch, R.1
Rudolph, F.2
Papoutsakis, E.3
-
60
-
-
0024616857
-
Coenzyme A transferase from Clostridium acetobutylicum ATCC 824 and its role in the uptake of acids
-
PID: 2719476, COI: 1:CAS:528:DyaL1MXhsFShtLo%3D
-
Wiesenborn D, Rudolph F, Papoutsakis E (1989a) Coenzyme A transferase from Clostridium acetobutylicum ATCC 824 and its role in the uptake of acids. Appl Environ Microbiol 55:323–329
-
(1989)
Appl Environ Microbiol
, vol.55
, pp. 323-329
-
-
Wiesenborn, D.1
Rudolph, F.2
Papoutsakis, E.3
-
61
-
-
0024615960
-
Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis
-
PID: 2719475, COI: 1:CAS:528:DyaL1MXhsFShtL0%3D
-
Wiesenborn D, Rudolph F, Papoutsakis E (1989b) Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis. Appl Environ Microbiol 55:317–322
-
(1989)
Appl Environ Microbiol
, vol.55
, pp. 317-322
-
-
Wiesenborn, D.1
Rudolph, F.2
Papoutsakis, E.3
-
62
-
-
84867579077
-
The redox-sensing protein Rex, a transcriptional regulator of solventogenesis in Clostridium acetobutylicum
-
PID: 22576944, COI: 1:CAS:528:DC%2BC38XhsVOqsbrI
-
Wietzke M, Bahl H (2012) The redox-sensing protein Rex, a transcriptional regulator of solventogenesis in Clostridium acetobutylicum. Appl Microbiol Biotechnol 96:749–761. doi:10.1007/s00253-012-4112-2
-
(2012)
Appl Microbiol Biotechnol
, vol.96
, pp. 749-761
-
-
Wietzke, M.1
Bahl, H.2
-
63
-
-
84905656034
-
Acetone-butanol-ethanol production from corn stover pretreated by alkaline twin-screw extrusion pretreatment
-
PID: 24114460, COI: 1:CAS:528:DC%2BC3sXhs1Sntr%2FM
-
Zhang Y, Hou T, Li B, Liu C, Mu X, Wang H (2014) Acetone-butanol-ethanol production from corn stover pretreated by alkaline twin-screw extrusion pretreatment. Bioprocess Biosyst Eng 37:913–921. doi:10.1007/s00449-013-1063-7
-
(2014)
Bioprocess Biosyst Eng
, vol.37
, pp. 913-921
-
-
Zhang, Y.1
Hou, T.2
Li, B.3
Liu, C.4
Mu, X.5
Wang, H.6
|