메뉴 건너뛰기




Volumn 143, Issue 3, 2016, Pages 530-539

Antagonistic roles of nibbler and hen1 in modulating piRNA 3′ ends in Drosophila

Author keywords

2 Omethylation; 3 terminal trimming; Drosophila; Hen1; Nbr; PiRNA; Small RNA sequencing; Transposon

Indexed keywords

HEN1 PROTEIN; NIBBLER PROTEIN; PIWI INTERACTING RNA; PROTEIN; UNCLASSIFIED DRUG; DROSOPHILA PROTEIN; EXORIBONUCLEASE; HEN1 PROTEIN, DROSOPHILA; METHYLTRANSFERASE; NIBBLER PROTEIN, DROSOPHILA; SMALL INTERFERING RNA; TRANSPOSON;

EID: 84956676393     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.128116     Document Type: Article
Times cited : (49)

References (35)
  • 1
    • 84891721442 scopus 로고    scopus 로고
    • Impact of age-associated increase in 2ʹ-O-methylation of miRNAs on aging and neurodegeneration in Drosophila
    • Abe, M., Naqvi, A., Hendriks, G.-J., Feltzin, V., Zhu, Y., Grigoriev, A. and Bonini, N. M. (2014). Impact of age-associated increase in 2ʹ-O-methylation of miRNAs on aging and neurodegeneration in Drosophila. Genes Dev. 28, 44-57.
    • (2014) Genes Dev , vol.28 , pp. 44-57
    • Abe, M.1    Naqvi, A.2    Hendriks, G.-J.3    Feltzin, V.4    Zhu, Y.5    Grigoriev, A.6    Bonini, N.M.7
  • 3
    • 36749037521 scopus 로고    scopus 로고
    • The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    • Aravin, A. A., Hannon, G. J. and Brennecke, J. (2007). The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318, 761-764.
    • (2007) Science , vol.318 , pp. 761-764
    • Aravin, A.A.1    Hannon, G.J.2    Brennecke, J.3
  • 4
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke, J., Aravin, A. A., Stark, A., Dus, M., Kellis, M., Sachidanandam, R. and Hannon, G. J. (2007). Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128, 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 5
    • 84891506556 scopus 로고    scopus 로고
    • Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues
    • De Cecco, M., Criscione, S. W., Peterson, A. L., Neretti, N., Sedivy, J. M. and Kreiling, J. A. (2013). Transposable elements become active and mobile in the genomes of aging mammalian somatic tissues. Aging 5, 867-883.
    • (2013) Aging , vol.5 , pp. 867-883
    • De Cecco, M.1    Criscione, S.W.2    Peterson, A.L.3    Neretti, N.4    Sedivy, J.M.5    Kreiling, J.A.6
  • 6
    • 0035863097 scopus 로고    scopus 로고
    • RNA interference is mediated by 21-and 22-nucleotide RNAs
    • Elbashir, S. M., Lendeckel, W. and Tuschl, T. (2001). RNA interference is mediated by 21-and 22-nucleotide RNAs. Genes Dev. 15, 188-200.
    • (2001) Genes Dev , vol.15 , pp. 188-200
    • Elbashir, S.M.1    Lendeckel, W.2    Tuschl, T.3
  • 7
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J. K., McCormack, A. L. and Yates, J. R. (1994). An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectr. 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectr , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 8
    • 84927911941 scopus 로고    scopus 로고
    • The exonuclease Nibbler regulates age-associated traits and modulates piRNA length in Drosophila
    • Feltzin, V. L., Khaladkar, M., Abe, M., Parisi, M., Hendriks, G.-J., Kim, J. and Bonini, N. M. (2015). The exonuclease Nibbler regulates age-associated traits and modulates piRNA length in Drosophila. Aging Cell 14, 443-452.
    • (2015) Aging Cell , vol.14 , pp. 443-452
    • Feltzin, V.L.1    Khaladkar, M.2    Abe, M.3    Parisi, M.4    Hendriks, G.-J.5    Kim, J.6    Bonini, N.M.7
  • 11
    • 81355125071 scopus 로고    scopus 로고
    • The 3
    • Han, B.W., Hung, J.-H., Weng, Z., Zamore, P. D. and Ameres, S. L. (2011). The 3ʹ-to-5ʹ exoribonuclease Nibbler shapes the 3ʹ ends of microRNAs bound to Drosophila Argonaute1. Curr. Biol. 21, 1878-1887.
    • (2011) Curr. Biol , vol.21 , pp. 1878-1887
    • Han, B.W.1    Hung, J.-H.2    Weng, Z.3    Zamore, P.D.4    Ameres, S.L.5
  • 12
    • 84929380410 scopus 로고    scopus 로고
    • PiRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production
    • Han, B. W., Wang, W., Li, C., Weng, Z. and Zamore, P. D. (2015a). piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production. Science 348, 817-821.
    • (2015) Science , vol.348 , pp. 817-821
    • Han, B.W.1    Wang, W.2    Li, C.3    Weng, Z.4    Zamore, P.D.5
  • 13
    • 84928998881 scopus 로고    scopus 로고
    • PiPipes: A set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome-and CAGE-seq, ChIP-seq and genomic DNA sequencing
    • Han, B. W., Wang, W., Zamore, P. D. and Weng, Z. (2015b). piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome-and CAGE-seq, ChIP-seq and genomic DNA sequencing. Bioinformatics 31, 593-595.
    • (2015) Bioinformatics , vol.31 , pp. 593-595
    • Han, B.W.1    Wang, W.2    Zamore, P.D.3    Weng, Z.4
  • 15
    • 34447291602 scopus 로고    scopus 로고
    • The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC
    • Horwich, M. D., Li, C., Matranga, C., Vagin, V., Farley, G., Wang, P. and Zamore, P. D. (2007). The Drosophila RNA methyltransferase, DmHen1, modifies germline piRNAs and single-stranded siRNAs in RISC. Curr. Biol. 17, 1265-1272.
    • (2007) Curr. Biol , vol.17 , pp. 1265-1272
    • Horwich, M.D.1    Li, C.2    Matranga, C.3    Vagin, V.4    Farley, G.5    Wang, P.6    Zamore, P.D.7
  • 16
    • 84868613084 scopus 로고    scopus 로고
    • The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis
    • Ipsaro, J. J., Haase, A. D., Knott, S. R., Joshua-Tor, L. and Hannon, G. J. (2012). The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis. Nature 491, 279-283.
    • (2012) Nature , vol.491 , pp. 279-283
    • Ipsaro, J.J.1    Haase, A.D.2    Knott, S.R.3    Joshua-Tor, L.4    Hannon, G.J.5
  • 17
    • 35748972060 scopus 로고    scopus 로고
    • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    • Kall, L., Canterbury, J. D., Weston, J., Noble, W. S. and MacCoss, M. J. (2007). Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat. Methods 4, 923-925.
    • (2007) Nat. Methods , vol.4 , pp. 923-925
    • Kall, L.1    Canterbury, J.D.2    Weston, J.3    Noble, W.S.4    Maccoss, M.J.5
  • 19
    • 13944262937 scopus 로고    scopus 로고
    • Understanding the odd science of aging
    • Kirkwood, T. B. L. (2005). Understanding the odd science of aging. Cell 120, 437-447.
    • (2005) Cell , vol.120 , pp. 437-447
    • Kirkwood, T.B.L.1
  • 20
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead, B. and Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods 9, U357-U354.
    • (2012) Nat. Methods , vol.9
    • Langmead, B.1    Salzberg, S.L.2
  • 21
    • 80051997952 scopus 로고    scopus 로고
    • Dynamic interactions between transposable elements and their hosts
    • Levin, H. L. and Moran, J. V. (2011). Dynamic interactions between transposable elements and their hosts. Nat. Rev. Genet. 12, 615-627.
    • (2011) Nat. Rev. Genet , vol.12 , pp. 615-627
    • Levin, H.L.1    Moran, J.V.2
  • 22
    • 23944493378 scopus 로고    scopus 로고
    • Methylation protects miRNAs and siRNAs from a 3ʹ-end uridylation activity in Arabildopsis
    • Li, J., Yang, Z., Yu, B., Liu, J. and Chen, X. (2005). Methylation protects miRNAs and siRNAs from a 3ʹ-end uridylation activity in Arabildopsis. Curr. Biol. 15, 1501-1507.
    • (2005) Curr. Biol , vol.15 , pp. 1501-1507
    • Li, J.1    Yang, Z.2    Yu, B.3    Liu, J.4    Chen, X.5
  • 23
    • 65549118489 scopus 로고    scopus 로고
    • Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies
    • Li, C., Vagin, V. V., Lee, S., Xu, J., Ma, S., Xi, H., Seitz, H., Horwich, M. D., Syrzycka, M., Honda, B. M. et al. (2009). Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies. Cell 137, 509-521.
    • (2009) Cell , vol.137 , pp. 509-521
    • Li, C.1    Vagin, V.V.2    Lee, S.3    Xu, J.4    Ma, S.5    Xi, H.6    Seitz, H.7    Horwich, M.D.8    Syrzycka, M.9    Honda, B.M.10
  • 25
    • 60149098474 scopus 로고    scopus 로고
    • Small RNAs as guardians of the genome
    • Malone, C. D. and Hannon, G. J. (2009). Small RNAs as guardians of the genome. Cell 136, 656-668.
    • (2009) Cell , vol.136 , pp. 656-668
    • Malone, C.D.1    Hannon, G.J.2
  • 26
    • 84929353775 scopus 로고    scopus 로고
    • PiRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis
    • Mohn, F., Handler, D. and Brennecke, J. (2015). piRNA-guided slicing specifies transcripts for Zucchini-dependent, phased piRNA biogenesis. Science 348, 812-817.
    • (2015) Science , vol.348 , pp. 812-817
    • Mohn, F.1    Handler, D.2    Brennecke, J.3
  • 27
    • 35548991887 scopus 로고    scopus 로고
    • Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad
    • Nishida, K. M., Saito, K., Mori, T., Kawamura, Y., Nagami-Okada, T., Inagaki, S., Siomi, H. and Siomi, M. C. (2007). Gene silencing mechanisms mediated by Aubergine piRNA complexes in Drosophila male gonad. RNA 13, 1911-1922.
    • (2007) RNA , vol.13 , pp. 1911-1922
    • Nishida, K.M.1    Saito, K.2    Mori, T.3    Kawamura, Y.4    Nagami-Okada, T.5    Inagaki, S.6    Siomi, H.7    Siomi, M.C.8
  • 30
    • 34347378274 scopus 로고    scopus 로고
    • Pimet, the Drosophila homolog of HEN1, mediates 2ʹ-O-methylation of Piwiinteracting RNAs at their 3ʹ ends
    • Saito, K., Sakaguchi, Y., Suzuki, T., Suzuki, T., Siomi, H. and Siomi, M. C. (2007). Pimet, the Drosophila homolog of HEN1, mediates 2ʹ-O-methylation of Piwiinteracting RNAs at their 3ʹ ends. Genes Dev. 21, 1603-1608.
    • (2007) Genes Dev , vol.21 , pp. 1603-1608
    • Saito, K.1    Sakaguchi, Y.2    Suzuki, T.3    Suzuki, T.4    Siomi, H.5    Siomi, M.C.6
  • 31
    • 84929380388 scopus 로고    scopus 로고
    • Phased piRNAs tackle transposons
    • Siomi, H. and Siomi, M. C. (2015). Phased piRNAs tackle transposons. Science 348, 756-757.
    • (2015) Science , vol.348 , pp. 756-757
    • Siomi, H.1    Siomi, M.C.2
  • 32
    • 79953089167 scopus 로고    scopus 로고
    • PIWI-interacting small RNAs: The vanguard of genome defence
    • Siomi, M. C., Sato, K., Pezic, D. and Aravin, A. A. (2011). PIWI-interacting small RNAs: the vanguard of genome defence. Nat. Rev. Mol. Cell Biol. 12, 246-258.
    • (2011) Nat. Rev. Mol. Cell Biol , vol.12 , pp. 246-258
    • Siomi, M.C.1    Sato, K.2    Pezic, D.3    Aravin, A.A.4
  • 33
    • 34447642555 scopus 로고    scopus 로고
    • Sorting of Drosophila small silencing RNAs
    • Tomari, Y., Du, T. and Zamore, P. D. (2007). Sorting of Drosophila small silencing RNAs. Cell 130, 299-308.
    • (2007) Cell , vol.130 , pp. 299-308
    • Tomari, Y.1    Du, T.2    Zamore, P.D.3
  • 35
    • 84883809403 scopus 로고    scopus 로고
    • Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila
    • Yu, Z., Ren, M., Wang, Z., Zhang, B., Rong, Y. S., Jiao, R. and Gao, G. (2013). Highly efficient genome modifications mediated by CRISPR/Cas9 in Drosophila. Genetics 195, 289-291.
    • (2013) Genetics , vol.195 , pp. 289-291
    • Yu, Z.1    Ren, M.2    Wang, Z.3    Zhang, B.4    Rong, Y.S.5    Jiao, R.6    Gao, G.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.