Diversity, antimicrobial action and structure- activity relationship of buffalo cathelicidins

PLoS ONE

Volumn 10, Issue 12, 2015, Pages

  Brahma, Biswajit ^a,c   Patra, Mahesh Chandra ^a   Karri, Satyanagalakshmi ^a   Chopra, Meenu ^a   Mishra, Purusottam ^a   De, Bidhan Chandra ^a   Kumar, Sushil ^a   Mahanty, Sourav ^a   Thakur, Kiran ^a   Poluri, Krishna Mohan ^b   Datta, Tirtha Kumar ^a   De, SaChinandan ^a  

^a NATIONAL DAIRY RESEARCH INSTITUTE   (India)

^b INDIAN INSTITUTE OF TECHNOLOGY   (India)

^c SHER E KASHMIR UNIVERSITY OF AGRICULTURAL SCIENCES AND TECHNOLOGY OF KASHMIR   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIINFECTIVE AGENT; CATHELICIDIN 4; UNCLASSIFIED DRUG; ANTIMICROBIAL CATIONIC PEPTIDE; AUTACOID; CATHELICIDIN; CYTOKINE; PROTEIN BINDING;

ANIMAL TISSUE; ARTICLE; BACTERIAL MEMBRANE; BACTERICIDAL ACTIVITY; BUFFALO; CATHL4 GENE; CONTROLLED STUDY; COPY NUMBER VARIATION; CYTOKINE RESPONSE; DRUG CYTOTOXICITY; DRUG DESIGN; DRUG MECHANISM; DRUG PENETRATION; DRUG POTENCY; DRUG SCREENING; FEMALE; IN VITRO STUDY; MINIMUM INHIBITORY CONCENTRATION; MOLECULAR DYNAMICS; NONHUMAN; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; STRUCTURE ACTIVITY RELATION; AMINO ACID SEQUENCE; ANIMAL; BACTERIUM; CELL MEMBRANE; CELL MEMBRANE PERMEABILITY; CHEMISTRY; CLASSIFICATION; DRUG EFFECTS; FIBROBLAST; GENE DOSAGE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MICROBIAL SENSITIVITY TEST; MOLECULAR GENETICS; MOLECULAR MODEL; PHYLOGENY; SEQUENCE ALIGNMENT; ULTRASTRUCTURE;

AMINO ACID SEQUENCE; ANIMALS; ANTI-INFECTIVE AGENTS; ANTIMICROBIAL CATIONIC PEPTIDES; BACTERIA; BUFFALOES; CATHELICIDINS; CELL MEMBRANE; CELL MEMBRANE PERMEABILITY; CYTOKINES; FIBROBLASTS; GENE DOSAGE; GENE EXPRESSION REGULATION; INFLAMMATION MEDIATORS; MICROBIAL SENSITIVITY TESTS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN BINDING; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 84956646987     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0144741     Document Type: Article

References (51)

1. Zasloff M. Antimicrobial peptides of multicellular organisms. Nature. 2002; 415: 389-395. PMID: 11807545
2. Zhu S, Gao B, Harvey PJ, Craik DJ. Dermatophytic defensin with antiinfective potential. Proc Natl Acad Sci USA. 2012; 109: 8495-8500. doi: 10.1073/pnas.1201263109 PMID: 22586077
3. Zanetti M. Cathelicidins multifunctional peptides of the innate immunity. J Leukoc Biol. 2004; 75: 39-48. PMID: 12960280
4. Tomasinsig L, Zanetti M. The cathelicidins-structure function and evolution. Curr Protein Pept Sci. 2005; 6: 23-34. PMID: 15638766
5. Henzler Wildman KA, Lee DK, Ramamoorthy A. (Mechanism of lipid bilayer disruption by the human antimicrobial peptide, LL-37. Biochemistry. 2003; 42: 6545-6558. PMID: 12767238
6. Subbalakshmi C, Sitaram N. Mechanism of antimicrobial action of indolicidin. FEMS Microbiol Lett. 1998; 160: 91-96. PMID: 9495018
7. Wang J, Wong ES, Whitley JC, Li J, Stringer JM, Short KR, et al. Ancient antimicrobial peptides kill antibiotic-resistant pathogens: Australian mammals provide new options. PLoS ONE. 2011; 6: e24030. doi: 10.1371/journal.pone.0024030 PMID: 21912615
8. FAO. Water Buffalo an asset undervalued. pp.1-6. F.R.O.f.A.a. Thailand Pacific Editor, Bangkok; 2000.
9. Borriello G, Capparelli R, Bianco M, Fenizia D, Alfano F, Capuano F, et al. Genetic Resistance to Brucella abortus in the Water Buffalo (Bubalus bubalis). Infect Immun. 2006; 74: 2115-2120. PMID: 16552040
10. National Research Council (NRC). The water buffalo new prospects for an underutilized animal. Washington DC National Academy Press; 1981.
11. Bassam BJ, Caetano-Anolles G. Silver staining of DNA in polyacrylamide gels. Appl Biochem Biotechnol. 1993; 42: 181-188.
12. Mukherjee A, Dass G, G JM, Gohain M, Brahma B, Datta TK, et al. Absolute copy number differences of Y chromosomal genes between crossbred (Bos taurus × Bos indicus) and Indicine bulls. J Anim Sci Biotechnol. 2013; 4:15. doi: 10.1186/2049-1891-4-15 PMID: 23556478
13. D'haene B, Vandesompele J, Hellemans J. Accurate and objective copy number profiling using realtime quantitative PCR. Methods. 2010; 50: 262-270. doi: 10.1016/j.ymeth.2009.12.007 PMID: 20060046
14. Whelan JA, Russel NB, Whelan MA. A method for the absolute quantification of cDNA using realtime PCR. J Immunol Methods. 2003; 278: 261-269. PMID: 12957413
15. Rasmussen R. Quantification on the LightCycler. In: Rapid cycle real-time PCR: methods and applications. Edited by: Meuer S, Wittwer C, Nakagawara K. New York: Springer; 2001; pp-21-34.
16. Wiegand I, Hilpert K, Hancock RE. Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat Protoc. 2008; 3: 163-175. doi: 10.1038/nprot. 2007.521 PMID: 18274517
17. Limia A, Sangari FJ, Wagner D, Bermudez LE. Characterization and expression of secA in Mycobacterium avium. FEMS Microbiol Lett. 2001; 197: 151-157. PMID: 11313128
18. Berney M, Hammes F, Bosshard F, Weilenmann HU, Egli T. Assessment and interpretation of bacterial viability by using the LIVE/DEAD BacLight Kit in combination with flow cytometry. Appl Environ Microbiol 2007; 73: 3283-3290. PMID: 17384309
19. Singh M, Brahma B, Maharana J, Patra MC, Kumar S, Mishra P, et al. Insight into buffalo (Bubalus bubalis) RIG1 and MDA5 receptors: A comparative study on dsRNA recognition and in-vitro antiviral response. PLOS ONE. 2013; 9: e89788. doi: 10.1371/journal.pone.0089788
20. Pronk S, Páll S, Schulz R, Larsson P, Bjelkmar P, Apostolov R, et al. GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics. 2013; 29: 845-54. doi: 10. 1093/bioinformatics/btt055 PMID: 23407358
21. Humphrey W, Dalke A, Schulten K. VMD: visual molecular dynamics. J Mol Graph. 1996; 14: 33-38, 27-28. PMID: 8744570
22. Das H, Ahmed SU, More T. Molecular characterization of cDNA encoding B. taurus cathelicidin-7 like antibiotic peptide from bone marrow cells of Bubalus bubalis. DNA Seq. 2008; 19: 347-356. PMID: 17852341
23. Panicker VP, George S. Identification of three novel myeloid cathelicidin cDNA and their predicted peptides in buffalo (Bubalus bubalis). Indian J Biochem Biophys. 2013; 50: 273-277. PMID: 24772945
24. Das H, Sharma B, Kumar A. Cloning and characterization of novel cathelicidin cDNA sequence of Bubalus bubalis homologous to Bos taurus cathelicidin-4. DNA Seq. 2006; 17: 407-414. PMID: 17381041
25. Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, et al. Copy number variation of individual cattle genomes using next-generation sequencing. Genome Res. 2012; 22: 778-790. doi: 10.1101/gr.133967.111 PMID: 22300768
26. Liu GY. Molecular pathogenesis of Staphylococcus aureus infection. Pediatr Res. 2009; 65: 71R-77R. doi: 10.1203/PDR.0b013e31819dc44d PMID: 19190527
27. Foster TJ, Geoghegan JA, Ganesh VK, Höök M. Adhesion invasion and evasion the many functions of the surface proteins of Staphylococcus aureus. Nat Rev Microbiol 2014; 12: 49-62. doi: 10.1038/nrmicro3161 PMID: 24336184
28. Srinivas N, Jetter P, Ueberbacher BJ, Werneburg M, Zerbe K, Steinmann J, et al. Peptidomimetic antibiotics target outer-membrane biogenesis in Pseudomonas aeruginosa. Science. 2010; 327: 1010-1013. doi: 10.1126/science.1182749 PMID: 20167788
29. Bjarnsholt T, Ciofu O, Molin S, Givskov M, Høiby N. Applying insights from biofilm biology to drug development- can a new approach be developed? Nat Rev Drug Discov. 2013; 12: 791-808. doi: 10.1038/nrd4000 PMID: 24080700
30. Pulido D, Moussaoui M, Andreu D, Nogués MV, Torrent M, Boix E. Antimicrobial action and cell agglutination by the eosinophil cationic protein are modulated by the cell wall lipopolysaccharide structure. Antimicrob Agents Chemother. 2012; 56: 2378-2385. doi: 10.1128/AAC.06107-11 PMID: 22330910
31. Torrent M, Pulido D, Nogués MV, Boix E. Exploring new biological functions of amyloids bacteria cell agglutination mediated by host protein aggregation. PLoS Pathog. 2012; 8: e1003005. doi: 10.1371/journal.ppat.1003005 PMID: 23133388
32. Lewis K. Persister cells dormancy and infectious disease. Nat Rev Microbiol. 2007; 5: 48-56. PMID: 17143318
33. Schmidt NW, Mishra A, Lai GH, Davis M, Sanders LK, Tran D, et al. Criterion for amino acid composition of defensins and antimicrobial peptides based on geometry of membrane destabilization. J Am Chem Soc. 2011; 133: 6720-6727. doi: 10.1021/ja200079a PMID: 21473577
34. Schmidt NW, Tai KP, Kamdar K, Mishra A, Lai GH, Zhao K, et al. Arginine in ?-defensins differential effects on bactericidal activity correspond to geometry of membrane curvature generation and peptidelipid phase behavior. J Bio Chem. 2012; 287: 21866-21872.
35. Schmidt NW, Mishra A, Wang J, DeGrado WF, Wong GC. Influenza virus A M2 protein generates negative Gaussian membrane curvature necessary for budding and scission. J Am Chem Soc. 2013; 135: 13710-13719. doi: 10.1021/ja400146z PMID: 23962302
36. Zimmerberg J, Kozlov MM. How proteins produce cellular membrane curvature. Nat Rev Mol Cell Biol. 2006; 7: 9-19. PMID: 16365634
37. Siegel DP, Kozlov MM. The Gaussian curvature elastic modulus of N-monomethylateddioleoylphosphatidylethanolamine relevance to membrane fusion and lipid phase behavior. Biophys J. 2004; 87: 366-374. PMID: 15240471
38. Schmidt NW, Wong GC. Antimicrobial peptides and induced membrane curvature Geometry, coordination chemistry, and molecular engineering. Curr Opin Solid State Mater Sci. 2013; 17: 151-163. PMID: 24778573
39. Barber J. Detergent ringing true as a model for membranes. Nature 1989; 340: 601-602. PMID: 2770865
40. Nagpal S, Gupta V, Kaur KJ, Salunke DM. Structure-function analysis of tritrypticin, an antibacterial peptide of innate immune origin. J Biol Chem. 1999; 274: 23296-23304. PMID: 10438505
41. Hilchie AL, Wuerth K, Hancock RE. Immunemodulation by multifaceted cationic host defense (antimicrobial) peptides. Nat Chem Biol. 2013; 9: 761-768. doi: 10.1038/nchembio.1393 PMID: 24231617
42. Hein WR, Mackay CR. Prominence of gamma delta T cells in the ruminant immune system. Immunol Today. 1991; 12: 30-34. PMID: 1826600
43. Moser B, Eberl M. T-APCs a novel tool for immunotherapy? Cell Mol Life Sci. 2011; 68: 2443-2452. doi: 10.1007/s00018-011-0706-6 PMID: 21573785
44. Hancock RE. The bacterial outer membrane as a drug barrier. Trends Microbiol. 1997; 5: 37-42. PMID: 9025234
45. Li XZ, Nikaido H. Efflux-mediated drug resistance in bacteria. Drugs 2004; 64: 159-204. PMID: 14717618
46. Walsh AG, Matewish MJ, Burrows LL, Monteiro MA, Perry MB, Lam JS. Lipopolysaccharide core phosphates are required for viability and intrinsic drug resistance in Pseudomonas aeruginosa. Mol Microbiol. 2000; 4: 712-727.
47. Allen HK, Donato J, Wang HH, Cloud-Hansen KA, Davies J, Handelsman J. Call of the wild antibiotic resistance genes in natural environments. Nat Rev Microbial. 2010; 8: 251-259.
48. Chambers HF, Deleo FR. Waves of resistance: Staphylococcus aureus in the antibiotic era. Nat Rev Microbiol. 2009; 7: 629-641. doi: 10.1038/nrmicro2200 PMID: 19680247
49. Brogden KA. Antimicrobial peptides pore formers or metabolic inhibitors in bacteria? Nat Rev Microbiol. 2005; 3: 238-250. PMID: 15703760
50. Hsu CH, Chen C, Jou ML, Lee AY, Lin YC, Yu YP, et al. Structural and DNA binding studies on the bovine antimicrobial peptide indolicidin: evidence for multiple conformations involved in binding to membranes and DNA. Nucl Acids Res 2005; 33: 4053-4064. PMID: 16034027
51. Killian JA, von Heijne G. How proteins adapt to a membrane-water interface. Trends Biochem Sci 2000; 25: 429-434. PMID: 10973056