Molecular diversity and multifarious plant growth promoting attributes of Bacilli associated with wheat (Triticum aestivum L.) rhizosphere from six diverse agro-ecological zones of India

Journal of Basic Microbiology

Volumn 56, Issue 1, 2016, Pages 44-58

  Verma, Priyanka ^a,b   Yadav, Ajar Nath ^a   Khannam, Kazy Sufia ^b   Kumar, Sanjay ^a   Saxena, Anil Kumar ^a   Suman, Archna ^a  

^a INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

^b NATIONAL INSTITUTE OF TECHNOLOGY   (India)

Author keywords

16S rRNA gene; Agro ecological zones; Bacilli; Extreme habitat; PGPR

Indexed keywords

BACTERIAL DNA; PHYTOHORMONE; RIBOSOME DNA; RNA 16S; SIDEROPHORE; SOIL;

BACILLUS; CHEMISTRY; ECOLOGY; GENETIC VARIATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; INDIA; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MULTIGENE FAMILY; NITROGEN FIXATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; PLANT DEVELOPMENT; POLYMERASE CHAIN REACTION; RHIZOSPHERE; SOIL; WHEAT;

BACILLUS; BASE SEQUENCE; DNA, BACTERIAL; DNA, RIBOSOMAL; ECOLOGY; GENETIC VARIATION; INDIA; MULTIGENE FAMILY; NITROGEN FIXATION; PHYLOGENY; PLANT DEVELOPMENT; PLANT GROWTH REGULATORS; POLYMERASE CHAIN REACTION; RHIZOSPHERE; RNA, RIBOSOMAL, 16S; SIDEROPHORES; SOIL; SOIL MICROBIOLOGY; TRITICUM;

EID: 84956632369     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.201500459     Document Type: Article

References (39)

1. Glick, B., Patten, C., Holguin, G., Penrose, D., 1999. Overview of plant growth-promoting bacteria. In: Biochemical and genetic mechanisms used by plant growth promoting bacteria. Imperial College Press, London, 1-13.
2. Verma, P., Yadav, A.N., Khannam, K.S., Panjiar, N., et al., 2015. Assessment of genetic diversity and plant growth promoting attributes of psychrotolerant bacteria allied with wheat (Triticum aestivum) from the northern hills zone of India. Ann. Microbiol., DOI:10.1007/s13213-014-1027-4
3. Suman, A., Yadav, A.N., Verma, P., 2015. Endophytic microbes in crops: Diversity and beneficial impact for sustainable agriculture, in: Singh, D.P., Abhilash, P.C., Prabha, R. (Eds.), Microbial Inoculants in Sustainable Agricultural Productivity, vol. 1, Research Perspectives. Springer-Verlag, Germany. DOI:10.1007/978-81-322-2647-5_7
4. Fischer, S.E., Fischer, S.I., Magris, S., Mori, G.B., 2007. Isolation and characterization of bacteria from the rhizosphere of wheat. World J. Microbiol. Biotechnol., 23, 895-903.
5. Beneduzi, A., Peres, D., da Costa, P.B., Bodanese Zanettini, M.H., et al., 2008. Genetic and phenotypic diversity of plant-growth-promoting bacilli isolated from wheat fields in southern Brazil. Res. Microbiol., 159, 244-250.
6. Grover, M., Ali, S.Z., Sandhya, V., Rasul, A., et al., 2011. Role of microorganisms in adaptation of agriculture crops to abiotic stresses. World J. Microbiol. Biotechnol., 27, 1231-1240.
7. Yoon, J.H., Kang, S.S., Lee, K.C., Lee, E.S., et al., 2001. Planomicrobium koreense gen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites (Nakagawa et al. 1996) and Planococcus mcmeekinii (Junge et al. 1998) to the genus Planomicrobium. Int. J. Syst. Evol. Microbiol., 51, 1511-1520.
8. Frühling, A., Schumann, P., Hippe, H., Sträubler, B., et al., 2002. Exiguobacterium undae sp. nov. and Exiguobacterium antarcticum sp. nov. Int. J. Syst. Evol. Microbiol., 52, 1171-1176.
9. Reddy, G., Matsumoto, G., Shivaji, S., 2003. Sporosarcina macmurdoensis sp. nov., from a cyanobacterial mat sample from a pond in the McMurdo Dry Valleys, Antarctica. Int. J. Syst. Evol. Microbiol., 53, 1363-1367.
10. Shivaji, S., Chaturvedi, P., Suresh, K., Reddy, G., et al., 2006. Bacillus aerius sp. nov., Bacillus aerophilus sp. nov., Bacillus stratosphericus sp. nov. and Bacillus altitudinis sp. nov., isolated from cryogenic tubes used for collecting air samples from high altitudes. Int. J. Syst. Evol. Microbiol., 56, 1465-1473.
11. Ahmed, I., Yokota, A., Yamazoe, A., Fujiwara, T., 2007. Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. Int. J. Syst. Evol. Microbiol., 57, 1117-1125.
12. Nelson, D.M., Glawe, A.J., Labeda, D.P., Cann, I.K., et al., 2009. Paenibacillus tundrae sp. nov. and Paenibacillus xylanexedens sp. nov., psychrotolerant, xylan-degrading bacteria from Alaskan tundra. Int. J. Syst. Evol. Microbiol., 59, 1708-1714.
13. Madhaiyan, M., Poonguzhali, S., Kwon, S.W., Sa, T.M., 2010. Bacillus methylotrophicus sp. nov., a methanol-utilizing, plant-growth-promoting bacterium isolated from rice rhizosphere soil. Int. J. Syst. Evol. Microbiol., 60, 2490-2495.
14. Yoon, J.H., Kang, S.J., Lee, S.Y., Oh, K.H., et al., 2010. Planococcus salinarum sp. nov., isolated from a marine solar saltern, and emended description of the genus Planococcus. Int. J. Syst. Evol. Microbiol., 60, 754-758.
15. Walkley, A., Black, I.A., 1934. An examination of the Degtjareff method for determining soil organic matter, and a proposed modification of the chromic acid titration method. Soil Sci., 37, 29-38.
16. Bray, R.H., Kurtz, L., 1945. Determination of total, organic, and available forms of phosphorus in soils. Soil Sci., 59, 39-46.
17. Yadav, A.N., Verma, P., Kumar, M., Pal, K.K., et al., 2015. Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India. Ann. Microbiol., 65, 611-629.
18. Pospiech, A., Neumann, B., 1995. A versatile quick-prep of genomic DNA from gram-positive bacteria. Trends Genet., 11, 217-218.
19. Tamura, K., Dudley, J., Nei, M., Kumar, S., 2007. MEGA4: molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol. Biol. Evol., 24, 1596-1599.
20. Bric, J.M., Bostock, R.M., Silverstone, S.E., 1991. Rapid in situ assay for indoleacetic acid production by bacteria immobilized on a nitrocellulose membrane. Appl. Environ. Microbiol., 57, 535-538.
21. Brown, M.E., Burlingham, S.K., 1968. Production of plant growth substances by Azotobacter chroococcum. J. Gen. Microbiol., 53, 135-144.
22. Jacobson, C.B., Pasternak, J., Glick, B.R., 1994. Partial purification and characterization of 1-aminocyclopropane-1-carboxylate deaminase from the plant growth promoting rhizobacterium Pseudomonas putida GR12-2. Can. J. Microbiol., 40, 1019-1025.
23. Pikovskaya, R., 1948. Mobilization of phosphorus in soil in connection with vital activity of some microbial species. Mikrobiologiya, 17, 362-370.
24. Hu, X., Chen, J., Guo, J., 2006. Two phosphate- and potassium-solubilizing bacteria isolated from Tianmu mountain, Zhejiang, China. World J. Microbiol. Biotechnol., 22, 983-990.
25. Fasim, F., Ahmed, N., Parsons, R., Gadd, G.M., 2002. Solubilization of zinc salts by a bacterium isolated from the air environment of a tannery. FEMS Microbiol. Lett., 213, 1-6.
26. Yadav, A.N., Sachan, S.G., Verma, P., Saxena, A.K., 2015. Bioprospecting of plant growth promoting psychrotrophic Bacilli from cold desert of north western Indian Himalayas. Indian J. Exp. Biol., (in Press).
27. Yadav, A.N., Sachan, S.G., Verma, P., Kaushik, R., et al., 2015. Cold active hydrolytic enzymes production by psychrotrophic Bacilli isolated from three sub-glacial lakes of NW Indian Himalayas. J. Basic Microbiol., DOI:10.1002/jobm.201500230
28. Han, S.O., New, P., 1998. Variation in nitrogen fixing ability among natural isolates of Azospirillum. Microb. Ecol., 36, 193-201.
29. Bradford, M.M., 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem., 72, 248-254.
30. Murphy, J., Riley, J., 1962. A modified single solution method for the determination of phosphate in natural waters. Anal. Chim. Acta., 27, 31-36.
31. Patten, C.L., Glick, B.R., 2002. Role of Pseudomonas putida indoleacetic acid in development of the host plant root system. Appl. Environ. Microbiol., 68, 3795-3801.
32. Kumar, M., Yadav, A.N., Tiwari, R., Prasanna, R., et al., 2014. Evaluating the diversity of culturable thermotolerant bacteria from four hot springs of India. J. Biodivers. Biopros. Dev., 1, 127. DOI:10.4172/ijbbd.1000127
33. Yadav, A.N., Sachan, S.G., Verma, P., Saxena, A.K., 2015. Prospecting cold deserts of north western Himalayas for microbial diversity and plant growth promoting attributes. J. Biosci. Bioeng., 119, 683-693.
34. Reva, O.N., Smirnov, V.V., Pettersson, B., Priest, F.G., 2002. Bacillus endophyticus sp. nov., isolated from the inner tissues of cotton plants (Gossypium sp.). Int. J. Syst. Evol. Microbiol., 52, 101-107.
35. Yadav, A.N., Sachan, S.G., Verma, P., Tyagi, S.P., et al., 2015. Culturable diversity and functional annotation of psychrotrophic bacteria from cold desert of Leh Ladakh (India). World J. Microbiol. Biotechnol., 31, 95-108.
36. Verma, P., Yadav, A.N., Kazy, S.K., Saxena, A.K., et al., 2014. Evaluating the diversity and phylogeny of plant growth promoting bacteria associated with wheat (Triticum aestivum) growing in central zone of India. Int. J. Curr. Microbiol. Appl. Sci., 3, 432-447.
37. Verma, P., Yadav, A.N., Kazy, S.K., Saxena, A.K., et al., 2013. Elucidating the diversity and plant growth promoting attributes of wheat (Triticum aestivum) associated acidotolerant bacteria from southern hills zone of India. Natl. J. Life Sci., 10, 219-226.
38. Beneduzi, A., Peres, D., Vargas, L.K., Bodanese-Zanettini, M.H., et al., 2008. Evaluation of genetic diversity and plant growth promoting activities of nitrogen-fixing bacilli isolated from rice fields in South Brazil. Appl. Soil. Ecol., 39, 311-320.
39. Yadav, A.N., Sharma, D., Gulati, S., Singh, S., et al., 2015. Haloarchaea endowed with phosphorus solubilization attribute implicated in phosphorus cycle. Sci. Rep., 5, 12293. DOI:10.1038/srep12293