Sporosarcina macmurdoensis sp. nov., from a cyanobacterial mat sample from a pond in the McMurdo Dry Valleys, Antarctica

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 5, 2003, Pages 1363-1367

  Reddy, G S N ^a   Matsumoto, G I ^b   Shivaji, S ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

^b OTSUMA WOMEN'S UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ANTARCTICA; ARTICLE; BACILLUS; BACTERIAL STRAIN; BACTERIUM ISOLATION; BIOCHEMISTRY; CHEMOTAXONOMY; CONTROLLED STUDY; CYANOBACTERIUM; GENE SEQUENCE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; POND; PRIORITY JOURNAL; RNA ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; SPECIES IDENTIFICATION; SPOROSARCINA; SPOROSARCINA GLOBISPORA; SPOROSARCINA MACMURDOENSIS; SPOROSARCINA PSYCHOPHILA;

ANTARCTIC REGIONS; BACILLACEAE; CYANOBACTERIA; DNA, BACTERIAL; DNA, RIBOSOMAL; FRESH WATER; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S;

BACTERIA (MICROORGANISMS); CYANOBACTERIA; POSIBACTERIA; PROKARYOTA; PSYCHROPHILA; SPOROSARCINA; SPOROSARCINA GLOBISPORA; SPOROSARCINA MACMURDOENSIS; SPOROSARCINA PSYCHROPHILA;

EID: 0141483514     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02628-0     Document Type: Article

References (31)

1. Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus as revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
2. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1105-1139. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
3. AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1202-1206. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
4. Claus, D., Fahmy, F., Rolf, H. J. & Tosunoglu, N. (1983). Sporosarcina halophila sp. nov., an obligate, slightly halophilic bacterium from salt marsh soils. Syst Appl Microbiol 4, 496-506.
5. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
6. Felsenstein, J. (1993). PHYLIP (phylogenetic inference package), version 3.5c. Department of Genetics, University of Washington, Seattle, WA, USA.
7. Holding, A. J. & Collee, J. G. (1971). Routine biochemical tests. Methods Microbiol 6A, 2-32.
8. Hugh, R. & Leifson, E. (1953). The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various gram-negative bacteria. J Bacteriol 66, 24-26.
9. Kaneda, T., Smith, E. J. & Naik, D. N. (1983). Fatty acid composition and primer specificity of de novo fatty acid synthetase in Bacillus globisporus, Bacillus insolitus and Bacillus psychrophilus. Can J Microbiol 29, 1634-1641.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Kluyver, A. J. & van Niel, C. B. (1936). Prospects for a natural classification of bacteria. Zentbl Bakteriol Parasitenkd Infektkrankh Hyg Abt II 94, 369-403.
12. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-206.
13. Larkin, J. M. & Stokes, J. L. (1967). Taxonomy of psychrophilic strains of Bacillus. J Bacteriol 94, 889-895.
14. Matsumoto, G. I. (1993). Geochemical features of the McMurdo Dry Valley lakes, Antarctica. Physical and biogeochemical processes in Antarctic lakes. Antarct Res Set 49, 95-118.
15. Miquel, P. (1889). Étude sur la fermantation ammoniacale et sur les ferments de l'urée. Ann Microgr 1, 506-519.
16. Nakamura, L. K. (1984). Bacillus psychrophilus sp. nov., nom. rev. Int J Syst Bacteriol 34, 121-123.
17. Reddy, G. S. N., Aggarwal, R. K., Matsumoto, G. I. & Shivaji, S. (2000). Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int J Syst Evol Microbiol 50, 1553-1561.
18. Reddy, G. S. N., Prakash, J. S. S., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S. (2002a). Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 52, 1017-1021.
19. Reddy, G. S. N., Prakash, J. S. S., Vairamani, M., Prabahar, S., Matsumoto, G. I. & Shivaji, S. (2002b). Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica. Extremophiles 6, 253-261.
20. Reddy, G. S. N., Prakash, J. S. S., Prabahar, V., Matsumoto, G. I., Stackebrandt, E. & Shivaji, S. (2003). Kocuria polaris sp. nov., an orange-pigmented psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. Int J Syst Evol Microbiol 53, 183-187.
21. Rüger, H.-J. (1983). Differentiation of Bacillus globisporus, Bacillus marinus comb. nov., Bacillus aminovorans, and Bacillus insolitus. Int J Syst Bacteriol 33, 157-161.
22. Sato, N. S. & Murata, N. (1988). Membrane lipids. Methods Enzymol 167, 251-259.
23. Shivaji, S., Rao, N. S., Saisree, L., Sheth, V., Reddy, G. S. N. & Bhargava, P. M. (1989). Isolation and identification of Pseudomonas spp. from Schirmacher Oasis, Antarctica. Appl Environ Microbiol 55, 767-770.
24. Shivaji, S., Ray, M. K., Kumar, G. S., Reddy, G. S. N., Saisree, L. & Wynn-Williams, D. D. (1991). Identification of Janthinobacterium lividum from the soils of the islands of Scotia Ridge and from Antarctic peninsula. Polar Biol 11, 267-272.
25. Shivaji, S., Bhanu, N. V. & Aggarwal, R. K. (2000). Identification of Yersinia pestis as the causative organism of plague in India as determined by 16S rDNA sequencing and RAPD-based genomic fingerprinting. FEMS Microbiol Lett 189, 247-252.
26. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
27. Stanier, R. Y., Palleroni, N. J. & Doudoroff, M. (1966). The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43, 159-271.
28. Stolp, H. & Gadkari, D. (1981). Nonpathogenic members of the genus Pseudomonas. In The Prokaryotes, vol. 1, pp. 719-741. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
29. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1982). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
30. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
31. Yoon, J.-H., Lee, K.-C., Weiss, N., Kho, Y. H., Kang, K. H. & Park, Y.-H. (2001). Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin & Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of the genus Sporosarcina. Int J Syst Evol Microbiol 51, 1079-1086.