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Volumn 9, Issue 12, 2014, Pages

Rapid profiling of the antigen regions recognized by serum antibodies using massively parallel sequencing of antigen-specific libraries

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; LYMPHOCYTE ANTIBODY; BACTERIAL ANTIGEN; MONOCLONAL ANTIBODY; PEPTIDE LIBRARY;

EID: 84956628408     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0114159     Document Type: Article
Times cited : (16)

References (45)
  • 1
    • 0024554750 scopus 로고
    • The B cell repertoire
    • Paige CJ, Wu GE (1989) The B cell repertoire. FASEB J 3: 1818-1824.
    • (1989) FASEB J , vol.3 , pp. 1818-1824
    • Paige, C.J.1    Wu, G.E.2
  • 2
    • 33845883856 scopus 로고    scopus 로고
    • Dominating immune response.;
    • 157-163 p
    • Holtappels R (2005) Dominating immune response.; Futura BIF, editor: B.I.F. Futura Vol. 20 pp 157-163. 157-163 p.
    • (2005) Futura BIF, Editor: B.I.F. Futura , vol.20 , pp. 157-163
    • Holtappels, R.1
  • 3
    • 0032211011 scopus 로고    scopus 로고
    • Deceptive imprinting: A cosmopolitan strategy for complicating vaccination
    • Nara PL, Garrity R (1998) Deceptive imprinting: a cosmopolitan strategy for complicating vaccination. Vaccine 16: 1780-1787.
    • (1998) Vaccine , vol.16 , pp. 1780-1787
    • Nara, P.L.1    Garrity, R.2
  • 5
    • 84856297845 scopus 로고    scopus 로고
    • Immune response following H1N1pdm09 vaccination: Differences in antibody repertoire and avidity in young adults and elderly populations stratified by age and gender
    • Khurana S, Verma N, Talaat KR, Karron RA, Golding H (2012) Immune response following H1N1pdm09 vaccination: differences in antibody repertoire and avidity in young adults and elderly populations stratified by age and gender. J Infect Dis 205: 610-620.
    • (2012) J Infect Dis , vol.205 , pp. 610-620
    • Khurana, S.1    Verma, N.2    Talaat, K.R.3    Karron, R.A.4    Golding, H.5
  • 6
    • 77953009742 scopus 로고    scopus 로고
    • Vaccines with MF5 adjuvant expand the antibody repertoire to target protective sites of pandemic avian H5N1 influenza virus
    • 15ra15
    • Khurana S, Chearwae W, Castellino F, Manischewitz J, King LR, et al. (2010) Vaccines with MF5 adjuvant expand the antibody repertoire to target protective sites of pandemic avian H5N1 influenza virus. Sci Transl Med 2: 15ra15.
    • (2010) Sci Transl Med , vol.2
    • Khurana, S.1    Chearwae, W.2    Castellino, F.3    Manischewitz, J.4    King, L.R.5
  • 7
    • 80052695382 scopus 로고    scopus 로고
    • Designing the next generation of vaccines for global public health
    • Bagnoli F, Baudner B, Mishra RP, Bartolini E, Fiaschi L, et al. (2011) Designing the next generation of vaccines for global public health. OMICS 15: 545-566.
    • (2011) OMICS , vol.15 , pp. 545-566
    • Bagnoli, F.1    Baudner, B.2    Mishra, R.P.3    Bartolini, E.4    Fiaschi, L.5
  • 8
    • 77958454595 scopus 로고    scopus 로고
    • Reverse vaccinology: Developing vaccines in the era of genomics
    • Sette A, Rappuoli R (2010) Reverse vaccinology: developing vaccines in the era of genomics. Immunity 33: 530-541.
    • (2010) Immunity , vol.33 , pp. 530-541
    • Sette, A.1    Rappuoli, R.2
  • 9
    • 84874092680 scopus 로고    scopus 로고
    • Lineage structure of the human antibody repertoire in response to influenza vaccination
    • 171ra119
    • Jiang N, He J, Weinstein JA, Penland L, Sasaki S, et al. (2013) Lineage structure of the human antibody repertoire in response to influenza vaccination. Sci Transl Med 5: 171ra119.
    • (2013) Sci Transl Med , vol.5
    • Jiang, N.1    He, J.2    Weinstein, J.A.3    Penland, L.4    Sasaki, S.5
  • 10
    • 84865412764 scopus 로고    scopus 로고
    • Models and methods for analysis of lymphocyte repertoire generation, development, selection and evolution
    • Mehr R, Sternberg-Simon M, Michaeli M, Pickman Y (2012) Models and methods for analysis of lymphocyte repertoire generation, development, selection and evolution. Immunol Lett 148: 11-22.
    • (2012) Immunol Lett , vol.148 , pp. 11-22
    • Mehr, R.1    Sternberg-Simon, M.2    Michaeli, M.3    Pickman, Y.4
  • 11
    • 84885969631 scopus 로고    scopus 로고
    • The application of next generation sequencing to the understanding of antibody repertoires
    • Mathonet P, Ullman CG (2013) The Application of Next Generation Sequencing to the Understanding of Antibody Repertoires. Front Immunol 4: 265.
    • (2013) Front Immunol , vol.4 , pp. 265
    • Mathonet, P.1    Ullman, C.G.2
  • 12
    • 85000245586 scopus 로고    scopus 로고
    • Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes
    • Busse CE, Czogiel I, Braun P, Arndt PF, Wardemann H (2013) Single-cell based high-throughput sequencing of full-length immunoglobulin heavy and light chain genes. Eur J Immunol.
    • (2013) Eur J Immunol
    • Busse, C.E.1    Czogiel, I.2    Braun, P.3    Arndt, P.F.4    Wardemann, H.5
  • 13
    • 7044241282 scopus 로고    scopus 로고
    • Phage display for epitope determination: A paradigm for identifying receptor-ligand interactions
    • Rowley MJ, O'Connor K, Wijeyewickrema L (2004) Phage display for epitope determination: a paradigm for identifying receptor-ligand interactions. Biotechnol Annu Rev 10: 151-188.
    • (2004) Biotechnol Annu Rev , vol.10 , pp. 151-188
    • Rowley, M.J.1    O'connor, K.2    Wijeyewickrema, L.3
  • 14
    • 0029715617 scopus 로고    scopus 로고
    • Phage-displayed peptides as tools for characterization of human sera
    • Felici F, Galfre G, Luzzago A, Monaci P, Nicosia A, et al. (1996) Phage-displayed peptides as tools for characterization of human sera. Methods Enzymol 267: 116-129.
    • (1996) Methods Enzymol , vol.267 , pp. 116-129
    • Felici, F.1    Galfre, G.2    Luzzago, A.3    Monaci, P.4    Nicosia, A.5
  • 15
  • 16
    • 57049086900 scopus 로고    scopus 로고
    • Epitope mapping of antibodies using bacterial surface display
    • Rockberg J, Lofblom J, Hjelm B, Uhlen M, Stahl S (2008) Epitope mapping of antibodies using bacterial surface display. Nat Methods 5: 1039-1045.
    • (2008) Nat Methods , vol.5 , pp. 1039-1045
    • Rockberg, J.1    Lofblom, J.2    Hjelm, B.3    Uhlen, M.4    Stahl, S.5
  • 18
    • 78650146150 scopus 로고    scopus 로고
    • Mapping of the Neisseria meningitidis NadA cell-binding site: Relevance of predicted {alpha}-helices in the NH2-terminal and dimeric coiled-coil regions
    • Tavano R, Capecchi B, Montanari P, Franzoso S, Marin O, et al. (2011) Mapping of the Neisseria meningitidis NadA cell-binding site: relevance of predicted {alpha}-helices in the NH2-terminal and dimeric coiled-coil regions. Journal of bacteriology 193: 107-115.
    • (2011) Journal of Bacteriology , vol.193 , pp. 107-115
    • Tavano, R.1    Capecchi, B.2    Montanari, P.3    Franzoso, S.4    Marin, O.5
  • 19
    • 84906830210 scopus 로고    scopus 로고
    • Ribosome display enhanced by next generation sequencing: A tool to identify antibody-specific peptide ligands
    • Heyduk E, Heyduk T (2014) Ribosome display enhanced by next generation sequencing: A tool to identify antibody-specific peptide ligands. Anal Biochem 464: 73-82.
    • (2014) Anal Biochem , vol.464 , pp. 73-82
    • Heyduk, E.1    Heyduk, T.2
  • 20
    • 84868344832 scopus 로고    scopus 로고
    • Deep sequencing analysis of phage libraries using Illumina platform
    • Matochko WL, Chu K, Jin B, Lee SW, Whitesides GM, et al. (2012) Deep sequencing analysis of phage libraries using Illumina platform. Methods 58: 47-55.
    • (2012) Methods , vol.58 , pp. 47-55
    • Matochko, W.L.1    Chu, K.2    Jin, B.3    Lee, S.W.4    Whitesides, G.M.5
  • 22
    • 84877142458 scopus 로고    scopus 로고
    • Deep sequencing of phage display libraries to support antibody discovery
    • Ravn U, Didelot G, Venet S, Ng KT, Gueneau F, et al. (2013) Deep sequencing of phage display libraries to support antibody discovery. Methods 60: 99-110.
    • (2013) Methods , vol.60 , pp. 99-110
    • Ravn, U.1    Didelot, G.2    Venet, S.3    Ng, K.T.4    Gueneau, F.5
  • 24
    • 84874087755 scopus 로고    scopus 로고
    • Engineering and analysis of peptide-recognition domain specificities by phage display and deep sequencing
    • McLaughlin ME, Sidhu SS (2013) Engineering and Analysis of Peptide-Recognition Domain Specificities by Phage Display and Deep Sequencing. Methods in Protein Design 523: 327-349.
    • (2013) Methods in Protein Design , vol.523 , pp. 327-349
    • McLaughlin, M.E.1    Sidhu, S.S.2
  • 26
    • 0035358814 scopus 로고    scopus 로고
    • Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics
    • Irving MB, Pan O, Scott JK (2001) Random-peptide libraries and antigen-fragment libraries for epitope mapping and the development of vaccines and diagnostics. Curr Opin Chem Biol 5: 314-324.
    • (2001) Curr Opin Chem Biol , vol.5 , pp. 314-324
    • Irving, M.B.1    Pan, O.2    Scott, J.K.3
  • 27
    • 0000951677 scopus 로고
    • Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid
    • Geysen HM, Meloen RH, Barteling SJ (1984) Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acid. Proc Natl Acad Sci U S A 81: 3998-4002.
    • (1984) Proc Natl Acad Sci U S A , vol.81 , pp. 3998-4002
    • Geysen, H.M.1    Meloen, R.H.2    Barteling, S.J.3
  • 28
    • 0022446684 scopus 로고
    • Continuous and discontinuous protein antigenic determinants
    • Barlow DJ, Edwards MS, Thornton JM (1986) Continuous and discontinuous protein antigenic determinants. Nature 322: 747-748.
    • (1986) Nature , vol.322 , pp. 747-748
    • Barlow, D.J.1    Edwards, M.S.2    Thornton, J.M.3
  • 29
    • 0030174309 scopus 로고    scopus 로고
    • Mapping epitope structure and activity: From one-dimensional prediction to four-dimensional description of antigenic specificity
    • Van Regenmortel MHV (1996) Mapping Epitope Structure and Activity: From One-Dimensional Prediction to Four-Dimensional Description of Antigenic Specificity. Methods 9: 465-472.
    • (1996) Methods , vol.9 , pp. 465-472
    • Van Regenmortel Mhv1
  • 30
    • 84860528401 scopus 로고    scopus 로고
    • Protective activity of Streptococcus pneumoniae Spr1875 protein fragments identified using a phage displayed genomic library
    • Cardaci A, Papasergi S, Midiri A, Mancuso G, Domina M, et al. (2012) Protective activity of Streptococcus pneumoniae Spr1875 protein fragments identified using a phage displayed genomic library. PLoS One 7: e36588.
    • (2012) PLoS One , vol.7 , pp. e36588
    • Cardaci, A.1    Papasergi, S.2    Midiri, A.3    Mancuso, G.4    Domina, M.5
  • 31
    • 80051876563 scopus 로고    scopus 로고
    • The Hypervariable region of Streptococcus pyogenes M protein escapes antibody attack by antigenic variation and weak immunogenicity
    • Lannergard J, Gustafsson MC, Waldemarsson J, Norrby-Teglund A, Stalhammar-Carlemalm M, et al. (2011) The Hypervariable region of Streptococcus pyogenes M protein escapes antibody attack by antigenic variation and weak immunogenicity. Cell Host Microbe 10: 147-157.
    • (2011) Cell Host Microbe , vol.10 , pp. 147-157
    • Lannergard, J.1    Gustafsson, M.C.2    Waldemarsson, J.3    Norrby-Teglund, A.4    Stalhammar-Carlemalm, M.5
  • 32
    • 79955702711 scopus 로고    scopus 로고
    • Structure-based vaccine design in HIV: Blind men and the elephant?
    • Pejchal R, Wilson IA (2010) Structure-based vaccine design in HIV: blind men and the elephant? Curr Pharm Des 16: 3744-3753.
    • (2010) Curr Pharm des , vol.16 , pp. 3744-3753
    • Pejchal, R.1    Wilson, I.A.2
  • 33
    • 34249827906 scopus 로고    scopus 로고
    • Characterization of human immunodeficiency virus type 1 monomeric and trimeric gp120 glycoproteins stabilized in the CD4-bound state: Antigenicity, biophysics, and immunogenicity
    • Dey B, Pancera M, Svehla K, Shu Y, Xiang SH, et al. (2007) Characterization of human immunodeficiency virus type 1 monomeric and trimeric gp120 glycoproteins stabilized in the CD4-bound state: antigenicity, biophysics, and immunogenicity. J Virol 81: 5579-5593.
    • (2007) J Virol , vol.81 , pp. 5579-5593
    • Dey, B.1    Pancera, M.2    Svehla, K.3    Shu, Y.4    Xiang, S.H.5
  • 34
    • 0344009558 scopus 로고    scopus 로고
    • Immunofocusing: Antigen engineering to promote the induction of HIVneutralizing antibodies
    • Pantophlet R, Burton DR (2003) Immunofocusing: antigen engineering to promote the induction of HIVneutralizing antibodies. Trends Mol Med 9: 468-473.
    • (2003) Trends Mol Med , vol.9 , pp. 468-473
    • Pantophlet, R.1    Burton, D.R.2
  • 35
    • 0038414622 scopus 로고    scopus 로고
    • Hyperglycosylated mutants of human immunodeficiency virus (HIV) type 1 monomeric gp120 as novel antigens for HIV vaccine design
    • Pantophlet R, Wilson IA, Burton DR (2003) Hyperglycosylated mutants of human immunodeficiency virus (HIV) type 1 monomeric gp120 as novel antigens for HIV vaccine design. J Virol 77: 5889-5901.
    • (2003) J Virol , vol.77 , pp. 5889-5901
    • Pantophlet, R.1    Wilson, I.A.2    Burton, D.R.3
  • 36
    • 12444337649 scopus 로고    scopus 로고
    • Improved design of an antigen with enhanced specificity for the broadly HIV-neutralizing antibody b12
    • Pantophlet R, Wilson IA, Burton DR (2004) Improved design of an antigen with enhanced specificity for the broadly HIV-neutralizing antibody b12. Protein Eng Des Sel 17: 749-758.
    • (2004) Protein Eng des Sel , vol.17 , pp. 749-758
    • Pantophlet, R.1    Wilson, I.A.2    Burton, D.R.3
  • 37
    • 84855433610 scopus 로고    scopus 로고
    • An engineered mutant of HIV-1 gp12 formulated with adjuvant Quil A promotes elicitation of antibody responses overlapping the CD4-binding site
    • Ahmed FK, Clark BE, Burton DR, Pantophlet R (2012) An engineered mutant of HIV-1 gp12 formulated with adjuvant Quil A promotes elicitation of antibody responses overlapping the CD4-binding site. Vaccine 30: 922-930.
    • (2012) Vaccine , vol.30 , pp. 922-930
    • Ahmed, F.K.1    Clark, B.E.2    Burton, D.R.3    Pantophlet, R.4
  • 38
    • 25144477447 scopus 로고    scopus 로고
    • Comparing antigenicity and immunogenicity of engineered gp120
    • Selvarajah S, Puffer B, Pantophlet R, Law M, Doms RW, et al. (2005) Comparing antigenicity and immunogenicity of engineered gp120. J Virol 79: 12148-12163.
    • (2005) J Virol , vol.79 , pp. 12148-12163
    • Selvarajah, S.1    Puffer, B.2    Pantophlet, R.3    Law, M.4    Doms, R.W.5
  • 39
    • 79952539379 scopus 로고    scopus 로고
    • Immunogenicity and safety of a multicomponent meningococcal serogroup B vaccine and a quadrivalent meningococcal CRM19 conjugate vaccine against serogroups A, C, W-135, and y in adults who are at increased risk for occupational exposure to meningococcal isolates
    • Kimura A, Toneatto D, Kleinschmidt A, Wang H, Dull P (2011) Immunogenicity and safety of a multicomponent meningococcal serogroup B vaccine and a quadrivalent meningococcal CRM19 conjugate vaccine against serogroups A, C, W-135, and Y in adults who are at increased risk for occupational exposure to meningococcal isolates. Clin Vaccine Immunol 18: 483-486.
    • (2011) Clin Vaccine Immunol , vol.18 , pp. 483-486
    • Kimura, A.1    Toneatto, D.2    Kleinschmidt, A.3    Wang, H.4    Dull, P.5
  • 40
    • 77951212739 scopus 로고    scopus 로고
    • Plasminogen-and fibronectin-binding protein B is involved in the adherence of Streptococcus pneumoniae to human epithelial cells
    • Papasergi S, Garibaldi M, Tuscano G, Signorino G, Ricci S, et al. (2010) Plasminogen-and fibronectin-binding protein B is involved in the adherence of Streptococcus pneumoniae to human epithelial cells. J Biol Chem 285: 7517-7524.
    • (2010) J Biol Chem , vol.285 , pp. 7517-7524
    • Papasergi, S.1    Garibaldi, M.2    Tuscano, G.3    Signorino, G.4    Ricci, S.5
  • 41
    • 0041592504 scopus 로고    scopus 로고
    • Identification of tumorassociated antigens by screening phage-displayed human cDNA libraries with sera from tumor patients
    • Minenkova O, Pucci A, Pavoni E, De Tomassi A, Fortugno P, et al. (2003) Identification of tumorassociated antigens by screening phage-displayed human cDNA libraries with sera from tumor patients. Int J Cancer 106: 534-544.
    • (2003) Int J Cancer , vol.106 , pp. 534-544
    • Minenkova, O.1    Pucci, A.2    Pavoni, E.3    De Tomassi, A.4    Fortugno, P.5
  • 42
    • 79951774269 scopus 로고    scopus 로고
    • Molecular cloning-A laboratory manual, 3rd edition
    • Chong L (2001) Molecular cloning-A laboratory manual, 3rd edition. Science (New York, N Y) 292: 446-446.
    • (2001) Science (New York, N Y) , vol.292 , pp. 446-446
    • Chong, L.1
  • 43
    • 84887791432 scopus 로고    scopus 로고
    • A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
    • Dillies MA, Rau A, Aubert J, Hennequet-Antier C, Jeanmougin M, et al. (2013) A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. Brief Bioinform 14: 671-683.
    • (2013) Brief Bioinform , vol.14 , pp. 671-683
    • Dillies, M.A.1    Rau, A.2    Aubert, J.3    Hennequet-Antier, C.4    Jeanmougin, M.5


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