-
1
-
-
77950541195
-
Comprehensive assessment of T-cell receptor β-chain diversity in αβ T cells
-
Robins H.S., Campregher P.V., Srivastava S.K., Wacher A., Turtle C.J., Kahsai O., et al. Comprehensive assessment of T-cell receptor β-chain diversity in αβ T cells. Blood 2009, 114:4099-4107.
-
(2009)
Blood
, vol.114
, pp. 4099-4107
-
-
Robins, H.S.1
Campregher, P.V.2
Srivastava, S.K.3
Wacher, A.4
Turtle, C.J.5
Kahsai, O.6
-
2
-
-
79955554975
-
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
-
Warren R.L., Freeman J.D., Zeng T., Choe G., Munro S., Moore R., et al. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. Genome Res 2011, 21:790-797.
-
(2011)
Genome Res
, vol.21
, pp. 790-797
-
-
Warren, R.L.1
Freeman, J.D.2
Zeng, T.3
Choe, G.4
Munro, S.5
Moore, R.6
-
3
-
-
79955022207
-
A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing
-
Venturi V., Quigley M.F., Greenaway H.Y., Ng P.C., Ende Z.S., McIntosh T., et al. A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing. J Immunol 2011, 186:4285-4294.
-
(2011)
J Immunol
, vol.186
, pp. 4285-4294
-
-
Venturi, V.1
Quigley, M.F.2
Greenaway, H.Y.3
Ng, P.C.4
Ende, Z.S.5
McIntosh, T.6
-
4
-
-
77953632929
-
Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements
-
Boyd S.D., Gaeta B.A., Jackson K.J., Fire A.Z., Marshall E.L., Merker J.D., et al. Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements. J Immunol 2010, 184:6986-6992.
-
(2010)
J Immunol
, vol.184
, pp. 6986-6992
-
-
Boyd, S.D.1
Gaeta, B.A.2
Jackson, K.J.3
Fire, A.Z.4
Marshall, E.L.5
Merker, J.D.6
-
5
-
-
33845508205
-
Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination
-
Venturi V., Kedzierska K., Price D.A., Doherty P.C., Douek D.C., Turner S.J., et al. Sharing of T cell receptors in antigen-specific responses is driven by convergent recombination. Proc Natl Acad Sci U S A 2006, 103:18691-18696.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 18691-18696
-
-
Venturi, V.1
Kedzierska, K.2
Price, D.A.3
Doherty, P.C.4
Douek, D.C.5
Turner, S.J.6
-
6
-
-
78650596159
-
Convergent recombination shapes the clonotypic landscape of the naive T-cell repertoire
-
Quigley M.F., Greenaway H.Y., Venturi V., Lindsay R., Quinn K.M., Seder R.A., et al. Convergent recombination shapes the clonotypic landscape of the naive T-cell repertoire. Proc Natl Acad Sci U S A 2010, 107:19414-19419.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 19414-19419
-
-
Quigley, M.F.1
Greenaway, H.Y.2
Venturi, V.3
Lindsay, R.4
Quinn, K.M.5
Seder, R.A.6
-
7
-
-
77954601328
-
Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing
-
Boyd S.D., Marshall E.L., Merker J.D., Maniar J.M., Zhang L.N., Sahaf B., et al. Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing. Sci Transl Med 2009, 1:12-23.
-
(2009)
Sci Transl Med
, vol.1
, pp. 12-23
-
-
Boyd, S.D.1
Marshall, E.L.2
Merker, J.D.3
Maniar, J.M.4
Zhang, L.N.5
Sahaf, B.6
-
8
-
-
77956551877
-
High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations
-
Wu Y.C., Kipling D., Leong H.S., Martin V., Ademokun A.A., Dunn-Walters D.K. High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations. Blood 2010, 116:1070-1078.
-
(2010)
Blood
, vol.116
, pp. 1070-1078
-
-
Wu, Y.C.1
Kipling, D.2
Leong, H.S.3
Martin, V.4
Ademokun, A.A.5
Dunn-Walters, D.K.6
-
9
-
-
51349126920
-
Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing
-
Campbell P.J., Pleasance E.D., Stephens P.J., Dicks E., Rance R., Goodhead I., et al. Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing. Proc Natl Acad Sci U S A 2008, 105:13081-13086.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 13081-13086
-
-
Campbell, P.J.1
Pleasance, E.D.2
Stephens, P.J.3
Dicks, E.4
Rance, R.5
Goodhead, I.6
-
10
-
-
63849131879
-
Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals
-
Scheid J.F., Mouquet H., Feldhahn N., Seaman M.S., Velinzon K., Pietzsch J., et al. Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals. Nature 2009, 458:636-640.
-
(2009)
Nature
, vol.458
, pp. 636-640
-
-
Scheid, J.F.1
Mouquet, H.2
Feldhahn, N.3
Seaman, M.S.4
Velinzon, K.5
Pietzsch, J.6
-
11
-
-
3042830447
-
Immunophenotypic differentiation patterns of normal hematopoiesis in human bone marrow: reference patterns for age-related changes and disease-induced shifts
-
van Lochem E.G., van der Velden V.H., Wind H.K., te Marvelde J.G., Westerdaal N.A., van Dongen J.J. Immunophenotypic differentiation patterns of normal hematopoiesis in human bone marrow: reference patterns for age-related changes and disease-induced shifts. Cytometry B Clin Cytom 2004, 60:1-13.
-
(2004)
Cytometry B Clin Cytom
, vol.60
, pp. 1-13
-
-
van Lochem, E.G.1
van der Velden, V.H.2
Wind, H.K.3
te Marvelde, J.G.4
Westerdaal, N.A.5
van Dongen, J.J.6
-
12
-
-
66249138108
-
Predicting and controlling the reactivity of immune cell populations against cancer
-
Oved K., Eden E., Akerman M., Noy R., Wolchinsky R., Izhaki O., et al. Predicting and controlling the reactivity of immune cell populations against cancer. Mol Syst Biol 2009, 5:265.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 265
-
-
Oved, K.1
Eden, E.2
Akerman, M.3
Noy, R.4
Wolchinsky, R.5
Izhaki, O.6
-
13
-
-
33750694590
-
Activation, coactivation, and costimulation of resting human natural killer cells
-
Bryceson Y.T., March M.E., Ljunggren H.G., Long E.O. Activation, coactivation, and costimulation of resting human natural killer cells. Immunol Rev 2006, 214:73-91.
-
(2006)
Immunol Rev
, vol.214
, pp. 73-91
-
-
Bryceson, Y.T.1
March, M.E.2
Ljunggren, H.G.3
Long, E.O.4
-
14
-
-
34247100277
-
Dendritic cells prime natural killer cells by trans-presenting interleukin 15
-
Lucas M., Schachterle W., Oberle K., Aichele P., Diefenbach A. Dendritic cells prime natural killer cells by trans-presenting interleukin 15. Immunity 2007, 26:503-517.
-
(2007)
Immunity
, vol.26
, pp. 503-517
-
-
Lucas, M.1
Schachterle, W.2
Oberle, K.3
Aichele, P.4
Diefenbach, A.5
-
15
-
-
77953741707
-
Immune memory redefined: characterizing the longevity of natural killer cells
-
Sun J.C., Beilke J.N., Lanier L.L. Immune memory redefined: characterizing the longevity of natural killer cells. Immunol Rev 2010, 236:83-94.
-
(2010)
Immunol Rev
, vol.236
, pp. 83-94
-
-
Sun, J.C.1
Beilke, J.N.2
Lanier, L.L.3
-
16
-
-
79956151449
-
Natural killer cell memory
-
Paust S., von Andrian U.H. Natural killer cell memory. Nat Immunol 2011, 12:500-508.
-
(2011)
Nat Immunol
, vol.12
, pp. 500-508
-
-
Paust, S.1
von Andrian, U.H.2
-
17
-
-
80052910202
-
Human NK cells differ more in their KIR2DL1-dependent thresholds for HLA-Cw6-mediated inhibition than in their maximal killing capacity
-
Almeida C.R., Ashkenazi A., Shahaf G., Kaplan D., Davis D.M., Mehr R. Human NK cells differ more in their KIR2DL1-dependent thresholds for HLA-Cw6-mediated inhibition than in their maximal killing capacity. PLoS ONE 2011, 6:e24927.
-
(2011)
PLoS ONE
, vol.6
-
-
Almeida, C.R.1
Ashkenazi, A.2
Shahaf, G.3
Kaplan, D.4
Davis, D.M.5
Mehr, R.6
-
18
-
-
78650805748
-
Different patterns of evolution in the centromeric and telomeric regions of group A and B haplotypes of the human killer cell Ig-like receptor locus
-
Pyo C.W., Guethlein L.A., Vu Q., Wang R., Abi-Rached L., Norman P.J., et al. Different patterns of evolution in the centromeric and telomeric regions of group A and B haplotypes of the human killer cell Ig-like receptor locus. PLoS ONE 2010, 5:e15115.
-
(2010)
PLoS ONE
, vol.5
-
-
Pyo, C.W.1
Guethlein, L.A.2
Vu, Q.3
Wang, R.4
Abi-Rached, L.5
Norman, P.J.6
-
19
-
-
79951834889
-
NK cells and immune memory
-
Sun J.C., Lopez-Verges S., Kim C.C., DeRisi J.L., Lanier L.L. NK cells and immune memory. J Immunol 2011, 186:1891-1897.
-
(2011)
J Immunol
, vol.186
, pp. 1891-1897
-
-
Sun, J.C.1
Lopez-Verges, S.2
Kim, C.C.3
DeRisi, J.L.4
Lanier, L.L.5
-
20
-
-
33846086979
-
Regulation of natural killer cell activity
-
Kirwan S.E., Burshtyn D.N. Regulation of natural killer cell activity. Curr Opin Immunol 2007, 19:46-54.
-
(2007)
Curr Opin Immunol
, vol.19
, pp. 46-54
-
-
Kirwan, S.E.1
Burshtyn, D.N.2
-
21
-
-
11144299492
-
NK cell recognition
-
Lanier L.L. NK cell recognition. Annu Rev Immunol 2005, 23:225-274.
-
(2005)
Annu Rev Immunol
, vol.23
, pp. 225-274
-
-
Lanier, L.L.1
-
22
-
-
38449091911
-
Hierarchy of the human natural killer cell response is determined by class and quantity of inhibitory receptors for self-HLA-B and HLA-C ligands
-
Yu J., Heller G., Chewning J., Kim S., Yokoyama W.M., Hsu K.C. Hierarchy of the human natural killer cell response is determined by class and quantity of inhibitory receptors for self-HLA-B and HLA-C ligands. J Immunol 2007, 179:5977-5989.
-
(2007)
J Immunol
, vol.179
, pp. 5977-5989
-
-
Yu, J.1
Heller, G.2
Chewning, J.3
Kim, S.4
Yokoyama, W.M.5
Hsu, K.C.6
-
23
-
-
70449729909
-
Evidence for high bi-allelic expression of activating Ly49 receptors
-
Rouhi A., Lai C.B., Cheng T.P., Takei F., Yokoyama W.M., Mager D.L. Evidence for high bi-allelic expression of activating Ly49 receptors. Nucleic Acids Res 2009, 37:5331-5342.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5331-5342
-
-
Rouhi, A.1
Lai, C.B.2
Cheng, T.P.3
Takei, F.4
Yokoyama, W.M.5
Mager, D.L.6
-
24
-
-
58149343475
-
Beyond licensing and disarming: a quantitative view on NK-cell education
-
Brodin P., Höglund P. Beyond licensing and disarming: a quantitative view on NK-cell education. Eur J Immunol 2008, 38:2934-2937.
-
(2008)
Eur J Immunol
, vol.38
, pp. 2934-2937
-
-
Brodin, P.1
Höglund, P.2
-
25
-
-
65249096787
-
NK cell responsiveness is tuned commensurate with the number of inhibitory receptors for self-MHC class I: the rheostat model
-
Joncker N.T., Fernandez N.C., Treiner E., Vivier E., Raulet D.H. NK cell responsiveness is tuned commensurate with the number of inhibitory receptors for self-MHC class I: the rheostat model. J Immunol 2009, 182:4572-4580.
-
(2009)
J Immunol
, vol.182
, pp. 4572-4580
-
-
Joncker, N.T.1
Fernandez, N.C.2
Treiner, E.3
Vivier, E.4
Raulet, D.H.5
-
26
-
-
0034001276
-
NK cell expression of the killer cell lectin-like receptor G1 (KLRG1), the mouse homolog of MAFA, is modulated by MHC class I molecules
-
Corral L., Hanke T., Vance R.E., Cado D., Raulet D.H. NK cell expression of the killer cell lectin-like receptor G1 (KLRG1), the mouse homolog of MAFA, is modulated by MHC class I molecules. Eur J Immunol 2000, 30:920-930.
-
(2000)
Eur J Immunol
, vol.30
, pp. 920-930
-
-
Corral, L.1
Hanke, T.2
Vance, R.E.3
Cado, D.4
Raulet, D.H.5
-
27
-
-
67651068734
-
KIR acquisition probabilities are independent of self-HLA class I ligands and increase with cellular KIR expression
-
Andersson S., Fauriat C., Malmberg J.A., Ljunggren H.G., Malmberg K.J. KIR acquisition probabilities are independent of self-HLA class I ligands and increase with cellular KIR expression. Blood 2009, 114:95-104.
-
(2009)
Blood
, vol.114
, pp. 95-104
-
-
Andersson, S.1
Fauriat, C.2
Malmberg, J.A.3
Ljunggren, H.G.4
Malmberg, K.J.5
-
28
-
-
67649479393
-
Probing natural killer cell education by Ly49 receptor expression analysis and computational modelling in single MHC class I mice
-
Johansson S., Salmon-Divon M., Johansson M.H., Pickman Y., Brodin P., Kärre K., et al. Probing natural killer cell education by Ly49 receptor expression analysis and computational modelling in single MHC class I mice. PLoS ONE 2009, 4:e6046.
-
(2009)
PLoS ONE
, vol.4
-
-
Johansson, S.1
Salmon-Divon, M.2
Johansson, M.H.3
Pickman, Y.4
Brodin, P.5
Kärre, K.6
-
29
-
-
0347133288
-
Models for natural killer cell repertoire formation
-
Salmon-Divon M., Höglund P., Mehr R. Models for natural killer cell repertoire formation. Clin Dev Immunol 2003, 10:183-192.
-
(2003)
Clin Dev Immunol
, vol.10
, pp. 183-192
-
-
Salmon-Divon, M.1
Höglund, P.2
Mehr, R.3
-
31
-
-
24144434732
-
Hanging in the balance. KIR and their role in disease
-
Williams A.P., Bateman A.R., Khakoo S.I. Hanging in the balance. KIR and their role in disease. Mol Interv 2005, 5:226-240.
-
(2005)
Mol Interv
, vol.5
, pp. 226-240
-
-
Williams, A.P.1
Bateman, A.R.2
Khakoo, S.I.3
-
32
-
-
3843075120
-
HLA and NK cell inhibitory receptor genes in resolving hepatitis C virus infection
-
Khakoo S.I., Thio C.L., Martin M.P., Brooks C.R., Gao X.J., Astemborski J., et al. HLA and NK cell inhibitory receptor genes in resolving hepatitis C virus infection. Science 2004, 305:872-874.
-
(2004)
Science
, vol.305
, pp. 872-874
-
-
Khakoo, S.I.1
Thio, C.L.2
Martin, M.P.3
Brooks, C.R.4
Gao, X.J.5
Astemborski, J.6
-
33
-
-
33750723103
-
KIR and disease: a model system or system of models
-
Khakoo S.I., Carrington M. KIR and disease: a model system or system of models. Immunol Rev 2006, 214:186-201.
-
(2006)
Immunol Rev
, vol.214
, pp. 186-201
-
-
Khakoo, S.I.1
Carrington, M.2
-
34
-
-
80052970005
-
Conflicting impact of alloreactive NK cells on transplantation outcomes after haploidentical transplantation: do the reconstitution kinetics of natural killer cells create these differences?
-
Zhao X.Y., Chang Y.J., Huang X.J. Conflicting impact of alloreactive NK cells on transplantation outcomes after haploidentical transplantation: do the reconstitution kinetics of natural killer cells create these differences?. Biol Blood Marrow Transplant 2011, 17:1436-1442.
-
(2011)
Biol Blood Marrow Transplant
, vol.17
, pp. 1436-1442
-
-
Zhao, X.Y.1
Chang, Y.J.2
Huang, X.J.3
-
35
-
-
58749094303
-
Estimation of the size of the alloreactive NK cell repertoire: studies in individuals homozygous for the group A KIR haplotype
-
Fauriat C., Andersson S., Bjorklund A.T., Carlsten M., Schaffer M., Bjorkstrom N.K., et al. Estimation of the size of the alloreactive NK cell repertoire: studies in individuals homozygous for the group A KIR haplotype. J Immunol 2008, 181:6010-6019.
-
(2008)
J Immunol
, vol.181
, pp. 6010-6019
-
-
Fauriat, C.1
Andersson, S.2
Bjorklund, A.T.3
Carlsten, M.4
Schaffer, M.5
Bjorkstrom, N.K.6
-
36
-
-
7244234068
-
Combinations of maternal KIR and fetal HLA-C genes influence the risk of preeclampsia and reproductive success
-
Hiby S.E., Walker J.J., O'Shaughnessy K.M., Redman C.W.G., Carrington M., Trowsdale J., et al. Combinations of maternal KIR and fetal HLA-C genes influence the risk of preeclampsia and reproductive success. J Exp Med 2004, 200:957-965.
-
(2004)
J Exp Med
, vol.200
, pp. 957-965
-
-
Hiby, S.E.1
Walker, J.J.2
O'Shaughnessy, K.M.3
Redman, C.W.G.4
Carrington, M.5
Trowsdale, J.6
-
37
-
-
44249095888
-
Association of maternal killer-cell immunoglobulin-like receptors and parental HLA-C genotypes with recurrent miscarriage
-
Hiby S.E., Regan L., Lo W., Farrell L., Carrington M., Moffett A. Association of maternal killer-cell immunoglobulin-like receptors and parental HLA-C genotypes with recurrent miscarriage. Hum Reprod 2008, 23:972-976.
-
(2008)
Hum Reprod
, vol.23
, pp. 972-976
-
-
Hiby, S.E.1
Regan, L.2
Lo, W.3
Farrell, L.4
Carrington, M.5
Moffett, A.6
-
38
-
-
79955750055
-
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum
-
Bendall S.C., Simonds E.F., Qiu P., Amir E.D., Krutzik P.O., Finck R., et al. Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum. Science 2011, 332:687-696.
-
(2011)
Science
, vol.332
, pp. 687-696
-
-
Bendall, S.C.1
Simonds, E.F.2
Qiu, P.3
Amir, E.D.4
Krutzik, P.O.5
Finck, R.6
-
39
-
-
71649088064
-
The extensive polymorphism of KIR genes
-
Middleton D., Gonzelez F. The extensive polymorphism of KIR genes. Immunology 2010, 129:8-19.
-
(2010)
Immunology
, vol.129
, pp. 8-19
-
-
Middleton, D.1
Gonzelez, F.2
-
40
-
-
78649726238
-
Imaging immune surveillance of individual natural killer cells confined in microwell arrays
-
Guldevall K., Vanherberghen B., Frisk T., Hurtig J., Christakou A.E., Manneberg O., et al. Imaging immune surveillance of individual natural killer cells confined in microwell arrays. PLoS ONE 2010, 5:e15453.
-
(2010)
PLoS ONE
, vol.5
-
-
Guldevall, K.1
Vanherberghen, B.2
Frisk, T.3
Hurtig, J.4
Christakou, A.E.5
Manneberg, O.6
-
41
-
-
80053896769
-
A silicon-glass microwell platform for high-resolution imaging and high-content screening with single cell resolution
-
Frisk T.W., Khorshidi M.A., Guldevall K., Vanherberghen B., Onfelt B. A silicon-glass microwell platform for high-resolution imaging and high-content screening with single cell resolution. Biomed Microdevices 2011, 13:683-693.
-
(2011)
Biomed Microdevices
, vol.13
, pp. 683-693
-
-
Frisk, T.W.1
Khorshidi, M.A.2
Guldevall, K.3
Vanherberghen, B.4
Onfelt, B.5
-
42
-
-
79960024256
-
Analysis of transient migration behavior of natural killer cells imaged in situ and in vitro
-
Khorshidi M.A., Vanherberghen B., Kowalewski J.M., Garrod K.R., Lindstrom S., Andersson-Svahn H., et al. Analysis of transient migration behavior of natural killer cells imaged in situ and in vitro. Integr Biol 2011, 3:770-778.
-
(2011)
Integr Biol
, vol.3
, pp. 770-778
-
-
Khorshidi, M.A.1
Vanherberghen, B.2
Kowalewski, J.M.3
Garrod, K.R.4
Lindstrom, S.5
Andersson-Svahn, H.6
-
43
-
-
34248585765
-
Definition of germinal-center B cell migration in vivo reveals predominant intrazonal circulation patterns
-
Hauser A.E., Junt T., Mempel T.R., Sneddon M.W., Kleinstein S.H., Henrickson S.E., et al. Definition of germinal-center B cell migration in vivo reveals predominant intrazonal circulation patterns. Immunity 2007, 26:655-667.
-
(2007)
Immunity
, vol.26
, pp. 655-667
-
-
Hauser, A.E.1
Junt, T.2
Mempel, T.R.3
Sneddon, M.W.4
Kleinstein, S.H.5
Henrickson, S.E.6
-
45
-
-
81155152466
-
Vaccination-induced changes in human B cell repertoire and pneumococcal IgM and IgA antibody at different ages
-
Ademokun A., Wu Y.C., Martin V., Mitra R., Sack U., Baxendale H., et al. Vaccination-induced changes in human B cell repertoire and pneumococcal IgM and IgA antibody at different ages. Aging Cell 2011, 10:922-930. 10.1111/j.1474-9726.2011.00732.x.
-
(2011)
Aging Cell
, vol.10
, pp. 922-930
-
-
Ademokun, A.1
Wu, Y.C.2
Martin, V.3
Mitra, R.4
Sack, U.5
Baxendale, H.6
-
46
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse S.M., Huber J.A., Morrison H.G., Sogin M.L., Welch D.M. Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 2007, 8:R143.
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.M.5
-
47
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M., Egholm M., Altman W.E., Attiya S., Bader J.S., Bemben L.A., et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
-
48
-
-
34547840205
-
IHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences
-
Gaeta B.A., Malming H.R., Jackson K.J.L., Bain M.E., Wilson P., Collins A.M. iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences. Bioinformatics 2007, 23:1580-1587.
-
(2007)
Bioinformatics
, vol.23
, pp. 1580-1587
-
-
Gaeta, B.A.1
Malming, H.R.2
Jackson, K.J.L.3
Bain, M.E.4
Wilson, P.5
Collins, A.M.6
-
49
-
-
77951949737
-
SoDA2: a hidden Markov model approach for identification of immunoglobulin rearrangements
-
Munshaw S., Kepler T.B. SoDA2: a hidden Markov model approach for identification of immunoglobulin rearrangements. Bioinformatics 2010, 26:867-872.
-
(2010)
Bioinformatics
, vol.26
, pp. 867-872
-
-
Munshaw, S.1
Kepler, T.B.2
-
50
-
-
0028986982
-
The human immunoglobulin VH repertoire
-
Cook G.P., Tomlinson I.M. The human immunoglobulin VH repertoire. Immunol Today 1995, 16:237-242.
-
(1995)
Immunol Today
, vol.16
, pp. 237-242
-
-
Cook, G.P.1
Tomlinson, I.M.2
-
51
-
-
0030006070
-
Clonal selection and learning in the antibody system
-
Rajewsky K. Clonal selection and learning in the antibody system. Nature 1996, 381:751-758.
-
(1996)
Nature
, vol.381
, pp. 751-758
-
-
Rajewsky, K.1
-
52
-
-
79958045471
-
IMGT/V-QUEST: IMGT standardized analysis of the immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences
-
Giudicelli V., Brochet X., Lefranc M.P. IMGT/V-QUEST: IMGT standardized analysis of the immunoglobulin (IG) and T cell receptor (TR) nucleotide sequences. Cold Spring Harb Protoc 2011, 2011:695-715.
-
(2011)
Cold Spring Harb Protoc
, vol.2011
, pp. 695-715
-
-
Giudicelli, V.1
Brochet, X.2
Lefranc, M.P.3
-
53
-
-
32544437698
-
SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations
-
Volpe J.M., Cowell L.G., Kepler T.B. SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations. Bioinformatics 2006, 22:438-444.
-
(2006)
Bioinformatics
, vol.22
, pp. 438-444
-
-
Volpe, J.M.1
Cowell, L.G.2
Kepler, T.B.3
-
54
-
-
2442717677
-
Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER
-
Souto-Carneiro M.M., Longo N.S., Russ D.E., Sun H.W., Lipsky P.E. Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER. J Immunol 2004, 172:6790-6802.
-
(2004)
J Immunol
, vol.172
, pp. 6790-6802
-
-
Souto-Carneiro, M.M.1
Longo, N.S.2
Russ, D.E.3
Sun, H.W.4
Lipsky, P.E.5
-
55
-
-
31844445051
-
Reconsidering the human immunoglobulin heavy-chain locus: 1. An evaluation of the expressed human IGHD gene repertoire
-
Lee C.E.H., Gaeta B., Malming H.R., Bain M.E., Sewell W.A., Collins A.M. Reconsidering the human immunoglobulin heavy-chain locus: 1. An evaluation of the expressed human IGHD gene repertoire. Immunogenetics 2006, 57:917-925.
-
(2006)
Immunogenetics
, vol.57
, pp. 917-925
-
-
Lee, C.E.H.1
Gaeta, B.2
Malming, H.R.3
Bain, M.E.4
Sewell, W.A.5
Collins, A.M.6
-
56
-
-
39749135559
-
Many human immunoglobulin heavy-chain IGHV gene polymorphisms have been reported in error
-
Wang Y., Jackson K.J., Sewell W.A., Collins A.M. Many human immunoglobulin heavy-chain IGHV gene polymorphisms have been reported in error. Immunol Cell Biol 2008, 86:111-115.
-
(2008)
Immunol Cell Biol
, vol.86
, pp. 111-115
-
-
Wang, Y.1
Jackson, K.J.2
Sewell, W.A.3
Collins, A.M.4
-
57
-
-
54049158422
-
The reported germline repertoire of human immunoglobulin kappa chain genes is relatively complete and accurate
-
Collins A.M., Wang Y., Singh V., Yu P., Jackson K.J., Sewell W.A. The reported germline repertoire of human immunoglobulin kappa chain genes is relatively complete and accurate. Immunogenetics 2008, 60:669-676.
-
(2008)
Immunogenetics
, vol.60
, pp. 669-676
-
-
Collins, A.M.1
Wang, Y.2
Singh, V.3
Yu, P.4
Jackson, K.J.5
Sewell, W.A.6
-
58
-
-
77957266497
-
Clustering-based identification of clonally-related immunoglobulin gene sequence sets
-
Chen Z., Collins A.M., Wang Y., Gaeta B.A. Clustering-based identification of clonally-related immunoglobulin gene sequence sets. Immunome Res 2010, 6(Suppl. 1):S4.
-
(2010)
Immunome Res
, vol.6
, Issue.SUPPL. 1
-
-
Chen, Z.1
Collins, A.M.2
Wang, Y.3
Gaeta, B.A.4
-
59
-
-
67650327072
-
A clonotype nomenclature for T cell receptors
-
Yassai M.B., Naumov Y.N., Naumova E.N., Gorski J. A clonotype nomenclature for T cell receptors. Immunogenetics 2009, 61:493-502.
-
(2009)
Immunogenetics
, vol.61
, pp. 493-502
-
-
Yassai, M.B.1
Naumov, Y.N.2
Naumova, E.N.3
Gorski, J.4
-
60
-
-
61349097791
-
B-cell responses to vaccination at the extremes of age
-
Siegrist C.A., Aspinall R. B-cell responses to vaccination at the extremes of age. Nat Rev Immunol 2009, 9:185-194.
-
(2009)
Nat Rev Immunol
, vol.9
, pp. 185-194
-
-
Siegrist, C.A.1
Aspinall, R.2
-
62
-
-
27744454600
-
Specificity and overlap in gene segment-defined antibody repertoires
-
Arnaout R.A. Specificity and overlap in gene segment-defined antibody repertoires. BMC Genomics 2005, 6:148.
-
(2005)
BMC Genomics
, vol.6
, pp. 148
-
-
Arnaout, R.A.1
-
63
-
-
67651227579
-
Activating and inhibitory killer immunoglobulin-like receptors (KIR) in haploidentical haemopoietic stem cell transplantation to cure high-risk leukaemias
-
Moretta A., Pende D., Locatelli F., Moretta L. Activating and inhibitory killer immunoglobulin-like receptors (KIR) in haploidentical haemopoietic stem cell transplantation to cure high-risk leukaemias. Clin Exp Immunol 2009, 157:325-331.
-
(2009)
Clin Exp Immunol
, vol.157
, pp. 325-331
-
-
Moretta, A.1
Pende, D.2
Locatelli, F.3
Moretta, L.4
-
64
-
-
33846862418
-
Novel analysis of clonal diversification in blood B cell and bone marrow plasma cell clones in immunoglobulin light chain amyloidosis
-
Abraham R.S., Manske M.K., Zuckerman N.S., Sohni A., Edelman H., Shahaf G., et al. Novel analysis of clonal diversification in blood B cell and bone marrow plasma cell clones in immunoglobulin light chain amyloidosis. J Clin Immunol 2007, 27:69-87.
-
(2007)
J Clin Immunol
, vol.27
, pp. 69-87
-
-
Abraham, R.S.1
Manske, M.K.2
Zuckerman, N.S.3
Sohni, A.4
Edelman, H.5
Shahaf, G.6
-
66
-
-
0037625160
-
Gene segment selection in V(D)J recombination: accessibility and beyond
-
Krangel M.S. Gene segment selection in V(D)J recombination: accessibility and beyond. Nat Immunol 2003, 4:624-630.
-
(2003)
Nat Immunol
, vol.4
, pp. 624-630
-
-
Krangel, M.S.1
-
67
-
-
79953113929
-
Epigenetic regulation of antigen receptor gene rearrangement
-
Feeney A.J. Epigenetic regulation of antigen receptor gene rearrangement. Curr Opin Immunol 2011, 23:171-177.
-
(2011)
Curr Opin Immunol
, vol.23
, pp. 171-177
-
-
Feeney, A.J.1
-
68
-
-
0033566925
-
Models for antigen receptor gene rearrangement. I. Biased receptor editing in B cells: implications for allelic exclusion
-
Mehr R., Shannon M., Litwin S. Models for antigen receptor gene rearrangement. I. Biased receptor editing in B cells: implications for allelic exclusion. J Immunol 1999, 163:1793-1798.
-
(1999)
J Immunol
, vol.163
, pp. 1793-1798
-
-
Mehr, R.1
Shannon, M.2
Litwin, S.3
-
69
-
-
0037220404
-
Models for antigen receptor gene rearrangement. III. Heavy and light chain allelic exclusion
-
Kalmanovich G., Mehr R. Models for antigen receptor gene rearrangement. III. Heavy and light chain allelic exclusion. J Immunol 2003, 170:182-193.
-
(2003)
J Immunol
, vol.170
, pp. 182-193
-
-
Kalmanovich, G.1
Mehr, R.2
-
70
-
-
0033566745
-
Models for antigen receptor gene rearrangement. II. Multiple rearrangement in the TCR: allelic exclusion or inclusion?
-
Piper H., Litwin S., Mehr R. Models for antigen receptor gene rearrangement. II. Multiple rearrangement in the TCR: allelic exclusion or inclusion?. J Immunol 1999, 163:1799-1808.
-
(1999)
J Immunol
, vol.163
, pp. 1799-1808
-
-
Piper, H.1
Litwin, S.2
Mehr, R.3
-
71
-
-
84865631443
-
High-throughput antibody sequencing reveals genetic evidence of global regulation of the naive and memory repertoires that extends across individuals
-
[Epub ahead of print]
-
Briney B.S., Willis J.R., McKinney B.A., Crowe J.E. High-throughput antibody sequencing reveals genetic evidence of global regulation of the naive and memory repertoires that extends across individuals. Genes Immun 2012, [Epub ahead of print]. 10.1038/gene.2012.20.
-
(2012)
Genes Immun
-
-
Briney, B.S.1
Willis, J.R.2
McKinney, B.A.3
Crowe, J.E.4
-
72
-
-
33947316710
-
Methods for comparing the diversity of samples of the T cell receptor repertoire
-
Venturi V., Kedzierska K., Turner S.J., Doherty P.C., Davenport M.P. Methods for comparing the diversity of samples of the T cell receptor repertoire. J Immunol Methods 2007, 321:182-195.
-
(2007)
J Immunol Methods
, vol.321
, pp. 182-195
-
-
Venturi, V.1
Kedzierska, K.2
Turner, S.J.3
Doherty, P.C.4
Davenport, M.P.5
-
73
-
-
65649122270
-
High-throughput sequencing of the zebrafish antibody repertoire
-
Weinstein J.A., Jiang N., White R.A., Fisher D.S., Quake S.R. High-throughput sequencing of the zebrafish antibody repertoire. Science 2009, 324:807-810.
-
(2009)
Science
, vol.324
, pp. 807-810
-
-
Weinstein, J.A.1
Jiang, N.2
White, R.A.3
Fisher, D.S.4
Quake, S.R.5
-
74
-
-
84857011935
-
Divergent human populations show extensive shared IGκ rearrangements in peripheral blood B cells
-
Jackson K.J.W.Y., Gaeta B.A., Pomat W., Siba P., Rimmer J., Sewell W.A., et al. Divergent human populations show extensive shared IGκ rearrangements in peripheral blood B cells. Immunogenetics 2012, 64:3-14.
-
(2012)
Immunogenetics
, vol.64
, pp. 3-14
-
-
Jackson, K.J.W.Y.1
Gaeta, B.A.2
Pomat, W.3
Siba, P.4
Rimmer, J.5
Sewell, W.A.6
-
75
-
-
38449096471
-
Partitioning diversity into independent alpha and beta components
-
Jost L. Partitioning diversity into independent alpha and beta components. Ecology 2007, 88:2427-2439.
-
(2007)
Ecology
, vol.88
, pp. 2427-2439
-
-
Jost, L.1
-
76
-
-
0002631876
-
The relation between the number of species and the number of individuals in a random sample of an animal population
-
Fisher R.A., Corbet A.S., Williams C.B. The relation between the number of species and the number of individuals in a random sample of an animal population. J Anim Ecol 1943, 12:42-58.
-
(1943)
J Anim Ecol
, vol.12
, pp. 42-58
-
-
Fisher, R.A.1
Corbet, A.S.2
Williams, C.B.3
-
77
-
-
0017139943
-
Estimating the number of unseen species: how many words did Shakespeare know
-
Efron B., Thisted R. Estimating the number of unseen species: how many words did Shakespeare know. Biometrika 1976, 63:435-447.
-
(1976)
Biometrika
, vol.63
, pp. 435-447
-
-
Efron, B.1
Thisted, R.2
-
78
-
-
77649270288
-
Estimation of T-cell repertoire diversity and clonal size distribution by Poisson abundance models
-
Sepúlveda N., Paulino C.D., Carneiro J. Estimation of T-cell repertoire diversity and clonal size distribution by Poisson abundance models. J Immunol Methods 2010, 353:124-137.
-
(2010)
J Immunol Methods
, vol.353
, pp. 124-137
-
-
Sepúlveda, N.1
Paulino, C.D.2
Carneiro, J.3
-
79
-
-
77958138360
-
Model for comparative analysis of antigen receptor repertoires
-
Rempala G.A., Seweryn M., Ignatowicz L. Model for comparative analysis of antigen receptor repertoires. J Theor Biol 2011, 269:1-15.
-
(2011)
J Theor Biol
, vol.269
, pp. 1-15
-
-
Rempala, G.A.1
Seweryn, M.2
Ignatowicz, L.3
-
80
-
-
77950376484
-
Maximum entropy models for antibody diversity
-
Mora T., Walczak A.M., Bialek W., Callan C.G. Maximum entropy models for antibody diversity. Proc Natl Acad Sci U S A 2010, 107:5405-5410.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 5405-5410
-
-
Mora, T.1
Walczak, A.M.2
Bialek, W.3
Callan, C.G.4
-
81
-
-
55249092534
-
MHC class I-specific inhibitory receptors and their ligands structure diverse human NK-cell repertoires toward a balance of missing self-response
-
Yawata M., Yawata N., Draghi M., Partheniou F., Little A.M., Parham P. MHC class I-specific inhibitory receptors and their ligands structure diverse human NK-cell repertoires toward a balance of missing self-response. Blood 2008, 112:2369-2380.
-
(2008)
Blood
, vol.112
, pp. 2369-2380
-
-
Yawata, M.1
Yawata, N.2
Draghi, M.3
Partheniou, F.4
Little, A.M.5
Parham, P.6
-
82
-
-
0037229456
-
Analysing six types of protein-protein interfaces
-
Ofran Y., Rost B. Analysing six types of protein-protein interfaces. J Mol Biol 2003, 325:377-387.
-
(2003)
J Mol Biol
, vol.325
, pp. 377-387
-
-
Ofran, Y.1
Rost, B.2
-
83
-
-
36849014286
-
Method for assessing the similarity between subsets of the T cell receptor repertoire
-
Venturi V., Kedzierska K., Tanaka M.M., Turner S.J., Doherty P.C., Davenport M.P. Method for assessing the similarity between subsets of the T cell receptor repertoire. J Immunol Methods 2008, 329:67-80.
-
(2008)
J Immunol Methods
, vol.329
, pp. 67-80
-
-
Venturi, V.1
Kedzierska, K.2
Tanaka, M.M.3
Turner, S.J.4
Doherty, P.C.5
Davenport, M.P.6
-
84
-
-
0001689602
-
The effect of sample size on the meaning of significance tests
-
Royall R. The effect of sample size on the meaning of significance tests. Am Stat 1986, 40:313-315.
-
(1986)
Am Stat
, vol.40
, pp. 313-315
-
-
Royall, R.1
-
85
-
-
0034019523
-
Changes in T cell receptor repertoire associated with graft-versus-tumor effect and graft-versus-host disease in patients with relapsed multiple myeloma after donor lymphocyte infusion
-
Orsini E., Alyea E.P., Schlossman R., Canning C., Soiffer R.J., Chillemi A., et al. Changes in T cell receptor repertoire associated with graft-versus-tumor effect and graft-versus-host disease in patients with relapsed multiple myeloma after donor lymphocyte infusion. Bone Marrow Transplant 2000, 25:623-632.
-
(2000)
Bone Marrow Transplant
, vol.25
, pp. 623-632
-
-
Orsini, E.1
Alyea, E.P.2
Schlossman, R.3
Canning, C.4
Soiffer, R.J.5
Chillemi, A.6
-
86
-
-
0033966371
-
Reconstitution of T-cell receptor repertoire diversity following T-cell depleted allogeneic bone marrow transplantation is related to hematopoietic chimerism
-
Wu C.J., Chillemi A., Alyea E.P., Orsini E., Neuberg D., Soiffer R.J., et al. Reconstitution of T-cell receptor repertoire diversity following T-cell depleted allogeneic bone marrow transplantation is related to hematopoietic chimerism. Blood 2000, 95:352-359.
-
(2000)
Blood
, vol.95
, pp. 352-359
-
-
Wu, C.J.1
Chillemi, A.2
Alyea, E.P.3
Orsini, E.4
Neuberg, D.5
Soiffer, R.J.6
-
88
-
-
0037082472
-
A broad T-cell repertoire diversity and an efficient thymic function indicate a favorable long-term immune reconstitution after cord blood stem cell transplantation
-
Talvensarri K., Clave E., Douay C., Rabian C., Garderet L., Busson M., et al. A broad T-cell repertoire diversity and an efficient thymic function indicate a favorable long-term immune reconstitution after cord blood stem cell transplantation. Blood 2002, 99:1458-1464.
-
(2002)
Blood
, vol.99
, pp. 1458-1464
-
-
Talvensarri, K.1
Clave, E.2
Douay, C.3
Rabian, C.4
Garderet, L.5
Busson, M.6
-
89
-
-
0032402158
-
Reconstitution of the T-cell compartment after bone marrow transplantation: restoration of the repertoire by thymic emigrants
-
Dumont-Girard F., Roux E., van Lier R.A., Hale G., Helg C., Chapuis B., et al. Reconstitution of the T-cell compartment after bone marrow transplantation: restoration of the repertoire by thymic emigrants. Blood 1998, 92:4464-4471.
-
(1998)
Blood
, vol.92
, pp. 4464-4471
-
-
Dumont-Girard, F.1
Roux, E.2
van Lier, R.A.3
Hale, G.4
Helg, C.5
Chapuis, B.6
-
90
-
-
0030176090
-
T cell receptor clonal diversity following allogeneic marrow grafting
-
Akatsuka Y., Cerveny C., Hansen J.A. T cell receptor clonal diversity following allogeneic marrow grafting. Hum Immunol 1996, 48:125-134.
-
(1996)
Hum Immunol
, vol.48
, pp. 125-134
-
-
Akatsuka, Y.1
Cerveny, C.2
Hansen, J.A.3
-
91
-
-
76749142133
-
Abnormalities of the αβ T-cell receptor repertoire in advanced myelodysplastic syndrome
-
Campregher P.V., Srivastava S.K., Deeg H.J., Robins H.S., Warren E.H. Abnormalities of the αβ T-cell receptor repertoire in advanced myelodysplastic syndrome. Exp Hematol 2010, 38:202-212.
-
(2010)
Exp Hematol
, vol.38
, pp. 202-212
-
-
Campregher, P.V.1
Srivastava, S.K.2
Deeg, H.J.3
Robins, H.S.4
Warren, E.H.5
-
92
-
-
79952111603
-
Analysis of the peripheral T-cell repertoire in kidney transplant patients
-
Miqueu P., Degauque N., Guillet M., Giral M., Ruiz C., Pallier A., et al. Analysis of the peripheral T-cell repertoire in kidney transplant patients. Eur J Immunol 2010, 40:3280-3290.
-
(2010)
Eur J Immunol
, vol.40
, pp. 3280-3290
-
-
Miqueu, P.1
Degauque, N.2
Guillet, M.3
Giral, M.4
Ruiz, C.5
Pallier, A.6
-
93
-
-
59049088629
-
B-cell diversity decreases in old age and is correlated with poor health status
-
Gibson K.L., Wu Y.C., Barnett Y., Duggan O., Vaughan R., Kondeatis E., et al. B-cell diversity decreases in old age and is correlated with poor health status. Aging Cell 2009, 8:18-25.
-
(2009)
Aging Cell
, vol.8
, pp. 18-25
-
-
Gibson, K.L.1
Wu, Y.C.2
Barnett, Y.3
Duggan, O.4
Vaughan, R.5
Kondeatis, E.6
-
94
-
-
0040752472
-
Modeling the meta-dynamics of lymphocyte repertoires
-
Mehr R. Modeling the meta-dynamics of lymphocyte repertoires. Arch Immunol Ther Exp (Warsz) 2001, 49:111-120.
-
(2001)
Arch Immunol Ther Exp (Warsz)
, vol.49
, pp. 111-120
-
-
Mehr, R.1
-
95
-
-
23344441151
-
Modeling and analysis of the meta-population dynamics of lymphocyte repertoires
-
Mehr R. Modeling and analysis of the meta-population dynamics of lymphocyte repertoires. J Comput Appl Math 2005, 184:223-241.
-
(2005)
J Comput Appl Math
, vol.184
, pp. 223-241
-
-
Mehr, R.1
-
96
-
-
0033120054
-
Reconciling repertoire shift with affinity maturation: the role of deleterious mutations
-
Shannon M., Mehr R. Reconciling repertoire shift with affinity maturation: the role of deleterious mutations. J Immunol 1999, 162:3950-3956.
-
(1999)
J Immunol
, vol.162
, pp. 3950-3956
-
-
Shannon, M.1
Mehr, R.2
-
97
-
-
77952791119
-
Computational systems biology in cancer: modeling methods and applications
-
Materi W., Wishart D.S. Computational systems biology in cancer: modeling methods and applications. Gene Regul Syst Biol 2007, 1:91-110.
-
(2007)
Gene Regul Syst Biol
, vol.1
, pp. 91-110
-
-
Materi, W.1
Wishart, D.S.2
-
98
-
-
33947236071
-
Toward a multiscale model of antigen presentation in immunity
-
Kirschner D.E., Chang S.T., Riggs T.W., Perry N., Linderman J.J. Toward a multiscale model of antigen presentation in immunity. Immunol Rev 2007, 216:93-118.
-
(2007)
Immunol Rev
, vol.216
, pp. 93-118
-
-
Kirschner, D.E.1
Chang, S.T.2
Riggs, T.W.3
Perry, N.4
Linderman, J.J.5
-
99
-
-
0027528460
-
A Mathematical-model of the effect of aging on bone-marrow cells colonizing the thymus
-
Mehr R., Abel L., Ubezio P., Globerson A., Agur Z. A Mathematical-model of the effect of aging on bone-marrow cells colonizing the thymus. Mech Ageing Dev 1993, 67:159-172.
-
(1993)
Mech Ageing Dev
, vol.67
, pp. 159-172
-
-
Mehr, R.1
Abel, L.2
Ubezio, P.3
Globerson, A.4
Agur, Z.5
-
100
-
-
0027998139
-
Colonization of the thymus by T-cell progenitors - models for cell-cell interactions
-
Mehr R., Segel L., Sharp A., Globerson A. Colonization of the thymus by T-cell progenitors - models for cell-cell interactions. J Theor Biol 1994, 170:247-257.
-
(1994)
J Theor Biol
, vol.170
, pp. 247-257
-
-
Mehr, R.1
Segel, L.2
Sharp, A.3
Globerson, A.4
-
101
-
-
0029617778
-
Lymphocyte development in irradiated thymuses: dynamics of colonization by progenitor cells and regeneration of resident cells
-
Mehr R., Fridkis-Hareli M., Abel L., Segel L., Globerson A. Lymphocyte development in irradiated thymuses: dynamics of colonization by progenitor cells and regeneration of resident cells. J Theor Biol 1995, 177:181-192.
-
(1995)
J Theor Biol
, vol.177
, pp. 181-192
-
-
Mehr, R.1
Fridkis-Hareli, M.2
Abel, L.3
Segel, L.4
Globerson, A.5
-
102
-
-
0030596613
-
Feedback regulation of T cell development in the thymus
-
Mehr R., Perelson A.S., Fridkis-Hareli M., Globerson A. Feedback regulation of T cell development in the thymus. J Theor Biol 1996, 181:157-167.
-
(1996)
J Theor Biol
, vol.181
, pp. 157-167
-
-
Mehr, R.1
Perelson, A.S.2
Fridkis-Hareli, M.3
Globerson, A.4
-
103
-
-
0030582545
-
Feedback regulation of T cell development: manifestations in aging
-
Mehr R., Perelson A.S., Fridkis-Hareli M., Globerson A. Feedback regulation of T cell development: manifestations in aging. Mech Ageing Dev 1996, 91:195-210.
-
(1996)
Mech Ageing Dev
, vol.91
, pp. 195-210
-
-
Mehr, R.1
Perelson, A.S.2
Fridkis-Hareli, M.3
Globerson, A.4
-
104
-
-
0031434748
-
Regulatory feedback pathways in the thymus
-
Mehr R., Perelson A.S., Fridkis-Hareli M., Globerson A. Regulatory feedback pathways in the thymus. Immunol Today 1997, 18:581-585.
-
(1997)
Immunol Today
, vol.18
, pp. 581-585
-
-
Mehr, R.1
Perelson, A.S.2
Fridkis-Hareli, M.3
Globerson, A.4
-
105
-
-
0032458142
-
MHC-linked syngeneic developmental preference in thymic lobes colonized with bone marrow cells: a mathematical model
-
Mehr R., Perelson A.S., Sharp A., Segel L., Globerson A. MHC-linked syngeneic developmental preference in thymic lobes colonized with bone marrow cells: a mathematical model. Dev Immunol 1998, 5:303-318.
-
(1998)
Dev Immunol
, vol.5
, pp. 303-318
-
-
Mehr, R.1
Perelson, A.S.2
Sharp, A.3
Segel, L.4
Globerson, A.5
-
106
-
-
0030924884
-
Blind T-cell homeostasis and the CD4/CD8 ratio in the thymus and peripheral blood
-
Mehr R., Perelson A.S. Blind T-cell homeostasis and the CD4/CD8 ratio in the thymus and peripheral blood. J Acquir Immune Defic Syndr Hum Retrovirol 1997, 14:387-398.
-
(1997)
J Acquir Immune Defic Syndr Hum Retrovirol
, vol.14
, pp. 387-398
-
-
Mehr, R.1
Perelson, A.S.2
-
107
-
-
0037343136
-
Asynchronous differentiation models explain bone marrow labeling kinetics and predict reflux between the pre- and immature B cell pools
-
Mehr R., Shahaf G., Sah A., Cancro M. Asynchronous differentiation models explain bone marrow labeling kinetics and predict reflux between the pre- and immature B cell pools. Int Immunol 2003, 15:301-312.
-
(2003)
Int Immunol
, vol.15
, pp. 301-312
-
-
Mehr, R.1
Shahaf, G.2
Sah, A.3
Cancro, M.4
-
108
-
-
4344692259
-
Screening of alternative models for transitional B cell maturation
-
Shahaf G., Allman D., Cancro M.P., Mehr R. Screening of alternative models for transitional B cell maturation. Int Immunol 2004, 16:1081-1090.
-
(2004)
Int Immunol
, vol.16
, pp. 1081-1090
-
-
Shahaf, G.1
Allman, D.2
Cancro, M.P.3
Mehr, R.4
-
109
-
-
30344455329
-
B cell development in aging mice: lessons from mathematical modeling
-
Shahaf G., Johnson K., Mehr R. B cell development in aging mice: lessons from mathematical modeling. Int Immunol 2006, 18:31-39.
-
(2006)
Int Immunol
, vol.18
, pp. 31-39
-
-
Shahaf, G.1
Johnson, K.2
Mehr, R.3
-
110
-
-
77949669230
-
Kinetic modeling reveals a common death niche for newly formed and mature B cells
-
Shahaf G., Cancro M.P., Mehr R. Kinetic modeling reveals a common death niche for newly formed and mature B cells. PLoS ONE 2010, 5:e9497.
-
(2010)
PLoS ONE
, vol.5
-
-
Shahaf, G.1
Cancro, M.P.2
Mehr, R.3
-
111
-
-
0036897678
-
Lymphocyte kinetics: the interpretation of labelling data
-
Asquith B., Debacq C., Macallan D.C., Willems L., Bangham C.R. Lymphocyte kinetics: the interpretation of labelling data. Trends Immunol 2002, 23:596-601.
-
(2002)
Trends Immunol
, vol.23
, pp. 596-601
-
-
Asquith, B.1
Debacq, C.2
Macallan, D.C.3
Willems, L.4
Bangham, C.R.5
-
112
-
-
33947225091
-
Quantification of T-cell dynamics: from telomeres to DNA labeling
-
Borghans J.A., de Boer R.J. Quantification of T-cell dynamics: from telomeres to DNA labeling. Immunol Rev 2007, 216:35-47.
-
(2007)
Immunol Rev
, vol.216
, pp. 35-47
-
-
Borghans, J.A.1
de Boer, R.J.2
-
113
-
-
77954466035
-
A minimum of two distinct heritable factors are required to explain correlation structures in proliferating lymphocytes
-
Markham J.F., Wellard C.J., Hawkins E.D., Duffy K.R., Hodgkin P.D. A minimum of two distinct heritable factors are required to explain correlation structures in proliferating lymphocytes. J R Soc Interface 2010, 7:1049-1059.
-
(2010)
J R Soc Interface
, vol.7
, pp. 1049-1059
-
-
Markham, J.F.1
Wellard, C.J.2
Hawkins, E.D.3
Duffy, K.R.4
Hodgkin, P.D.5
-
114
-
-
84865607726
-
Intracellular competition for fates in the immune system
-
[Epub ahead of print]
-
Duffy K.R., Hodgkin P.D. Intracellular competition for fates in the immune system. Trends Cell Biol 2012, [Epub ahead of print].
-
(2012)
Trends Cell Biol
-
-
Duffy, K.R.1
Hodgkin, P.D.2
-
115
-
-
84856072934
-
Activation-induced B cell fates are selected by intracellular stochastic competition
-
Duffy K.R., Wellard C.J., Markham J.F., Zhou J.H., Holmberg R., Hawkins E.D., et al. Activation-induced B cell fates are selected by intracellular stochastic competition. Science 2012, 335:338-341.
-
(2012)
Science
, vol.335
, pp. 338-341
-
-
Duffy, K.R.1
Wellard, C.J.2
Markham, J.F.3
Zhou, J.H.4
Holmberg, R.5
Hawkins, E.D.6
-
116
-
-
74049093675
-
Interpreting CFSE obtained division histories of B cells in vitro with Smith-Martin and cyton type models
-
Lee H.Y., Hawkins E., Zand M.S., Mosmann T., Wu H., Hodgkin P.D., et al. Interpreting CFSE obtained division histories of B cells in vitro with Smith-Martin and cyton type models. Bull Math Biol 2009, 71:1649-1670.
-
(2009)
Bull Math Biol
, vol.71
, pp. 1649-1670
-
-
Lee, H.Y.1
Hawkins, E.2
Zand, M.S.3
Mosmann, T.4
Wu, H.5
Hodgkin, P.D.6
-
117
-
-
56249123996
-
Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling
-
Chavali A.K., Gianchandani E.P., Tung K.S., Lawrence M.B., Peirce S.M., Papin J.A. Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling. Trends Immunol 2008, 29:589-599.
-
(2008)
Trends Immunol
, vol.29
, pp. 589-599
-
-
Chavali, A.K.1
Gianchandani, E.P.2
Tung, K.S.3
Lawrence, M.B.4
Peirce, S.M.5
Papin, J.A.6
-
118
-
-
79957671415
-
B cells within germinal centers migrate preferentially from dark to light zone
-
Beltman J.B., Allen C.D., Cyster J.G., de Boer R.J. B cells within germinal centers migrate preferentially from dark to light zone. Proc Natl Acad Sci U S A 2011, 108:8755-8760.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 8755-8760
-
-
Beltman, J.B.1
Allen, C.D.2
Cyster, J.G.3
de Boer, R.J.4
-
119
-
-
79960517468
-
Modelling natural killer cell immunological synapses
-
Kaplan A., Kotzer S., Salmon-Divon M., Almeida C.R., Höglund P., Davis D.M., et al. Modelling natural killer cell immunological synapses. J Immunol 2011, 187:760-773.
-
(2011)
J Immunol
, vol.187
, pp. 760-773
-
-
Kaplan, A.1
Kotzer, S.2
Salmon-Divon, M.3
Almeida, C.R.4
Höglund, P.5
Davis, D.M.6
-
120
-
-
71549163142
-
Modeling and simulation of the immune system as a self-regulating network
-
Kim P.S.L.D., Lee P.P. Modeling and simulation of the immune system as a self-regulating network. Methods Enzymol 2009, 467:79-109.
-
(2009)
Methods Enzymol
, vol.467
, pp. 79-109
-
-
Kim, P.S.L.D.1
Lee, P.P.2
-
121
-
-
13244249979
-
Models for the dynamics and order of immunoglobulin isotype switching
-
Yaish B., Mehr R. Models for the dynamics and order of immunoglobulin isotype switching. Bull Math Biol 2005, 67:15-32.
-
(2005)
Bull Math Biol
, vol.67
, pp. 15-32
-
-
Yaish, B.1
Mehr, R.2
-
122
-
-
0026556477
-
A computer model of cellular interactions in the immune system
-
Celada F., Seiden P.E. A computer model of cellular interactions in the immune system. Immunol Today 1992, 13:56-62.
-
(1992)
Immunol Today
, vol.13
, pp. 56-62
-
-
Celada, F.1
Seiden, P.E.2
-
123
-
-
77956357957
-
Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system
-
Rapin N., Lund O., Bernaschi M., Castiglione F. Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system. PLoS ONE 2010, 5:e9862.
-
(2010)
PLoS ONE
, vol.5
-
-
Rapin, N.1
Lund, O.2
Bernaschi, M.3
Castiglione, F.4
-
124
-
-
74049099391
-
Computational modeling of signaling networks for eukaryotic chemosensing
-
Meier-Schellersheim M., Klauschen F., Angermann B. Computational modeling of signaling networks for eukaryotic chemosensing. Methods Mol Biol 2009, 571:507-526.
-
(2009)
Methods Mol Biol
, vol.571
, pp. 507-526
-
-
Meier-Schellersheim, M.1
Klauschen, F.2
Angermann, B.3
-
125
-
-
33846542982
-
Emergent dynamics of thymocyte development and lineage determination
-
Efroni S., Harel D., Cohen I.R. Emergent dynamics of thymocyte development and lineage determination. PLoS Comput Biol 2007, 3:e13.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Efroni, S.1
Harel, D.2
Cohen, I.R.3
-
126
-
-
54249165359
-
Antigen-driven selection in germinal centers as reflected by the shape characteristics of immunoglobulin gene lineage trees: a large-scale simulation study
-
Shahaf G., Barak M., Zuckerman N.S., Swerdlin N., Gorfine M., Mehr R. Antigen-driven selection in germinal centers as reflected by the shape characteristics of immunoglobulin gene lineage trees: a large-scale simulation study. J Theor Biol 2008, 255:210-222.
-
(2008)
J Theor Biol
, vol.255
, pp. 210-222
-
-
Shahaf, G.1
Barak, M.2
Zuckerman, N.S.3
Swerdlin, N.4
Gorfine, M.5
Mehr, R.6
-
127
-
-
33947212334
-
Recirculation of germinal center B cells: a multilevel selection strategy for antibody maturation
-
Or-Guil M., Wittenbrink N., Weiser A.A., Schuchhardt J. Recirculation of germinal center B cells: a multilevel selection strategy for antibody maturation. Immunol Rev 2007, 216:130-141.
-
(2007)
Immunol Rev
, vol.216
, pp. 130-141
-
-
Or-Guil, M.1
Wittenbrink, N.2
Weiser, A.A.3
Schuchhardt, J.4
-
128
-
-
79957835550
-
Somatic hypermutation targeting is influenced by location within the immunoglobulin V region
-
Cohen R.M., Kleinstein S.H., Louzoun Y. Somatic hypermutation targeting is influenced by location within the immunoglobulin V region. Mol Immunol 2011, 48:1477-1483.
-
(2011)
Mol Immunol
, vol.48
, pp. 1477-1483
-
-
Cohen, R.M.1
Kleinstein, S.H.2
Louzoun, Y.3
-
129
-
-
77954465946
-
TNF and IL-10 are major factors in modulation of the phagocytic cell environment in lung and lymph node in tuberculosis: a next-generation two-compartmental model
-
Marino S., Myers A., Flynn J.L., Kirschner D.E. TNF and IL-10 are major factors in modulation of the phagocytic cell environment in lung and lymph node in tuberculosis: a next-generation two-compartmental model. J Theor Biol 2010, 265:586-598.
-
(2010)
J Theor Biol
, vol.265
, pp. 586-598
-
-
Marino, S.1
Myers, A.2
Flynn, J.L.3
Kirschner, D.E.4
-
131
-
-
79953194081
-
Multiscale computational modeling reveals a critical role for TNF-alpha receptor 1 dynamics in tuberculosis granuloma formation
-
Fallahi-Sichani M., El-Kebir M., Marino S., Kirschner D.E., Linderman J.J. Multiscale computational modeling reveals a critical role for TNF-alpha receptor 1 dynamics in tuberculosis granuloma formation. J Immunol 2011, 186:3472-3483.
-
(2011)
J Immunol
, vol.186
, pp. 3472-3483
-
-
Fallahi-Sichani, M.1
El-Kebir, M.2
Marino, S.3
Kirschner, D.E.4
Linderman, J.J.5
-
132
-
-
81155159689
-
Systems biology approaches for understanding cellular mechanisms of immunity in lymph nodes during infection
-
Mirsky H.P., Miller M.J., Linderman J.J., Kirschner D.E. Systems biology approaches for understanding cellular mechanisms of immunity in lymph nodes during infection. J Theor Biol 2011, 287:160-170.
-
(2011)
J Theor Biol
, vol.287
, pp. 160-170
-
-
Mirsky, H.P.1
Miller, M.J.2
Linderman, J.J.3
Kirschner, D.E.4
-
133
-
-
14744292687
-
Stochastic modeling of T cell receptor γ gene rearrangement
-
Sepúlveda N., Boucontet L., Pereira P., Carneiro J. Stochastic modeling of T cell receptor γ gene rearrangement. J Theor Biol 2005, 234:153-165.
-
(2005)
J Theor Biol
, vol.234
, pp. 153-165
-
-
Sepúlveda, N.1
Boucontet, L.2
Pereira, P.3
Carneiro, J.4
-
134
-
-
84867740388
-
Cell division curtails helper phenotype plasticity and expedites helper T-cell differentiation
-
[Epub ahead of print]
-
van den Ham H.J., de Boer R.J. Cell division curtails helper phenotype plasticity and expedites helper T-cell differentiation. Immunol Cell Biol 2012, [Epub ahead of print]. 10.1038/icb.2012.23.
-
(2012)
Immunol Cell Biol
-
-
van den Ham, H.J.1
de Boer, R.J.2
-
135
-
-
67650476322
-
Towards estimating the true duration of dendritic cell interactions with T cells
-
Beltman J.B., Henrickson S.E., von Andrian U.H., de Boer R.J., Maree A.F. Towards estimating the true duration of dendritic cell interactions with T cells. J Immunol Methods 2009, 347:54-69.
-
(2009)
J Immunol Methods
, vol.347
, pp. 54-69
-
-
Beltman, J.B.1
Henrickson, S.E.2
von Andrian, U.H.3
de Boer, R.J.4
Maree, A.F.5
|