Phage display screening without repetitious selection rounds

Analytical Biochemistry

Volumn 421, Issue 2, 2012, Pages 622-631

  'T Hoen, Peter A C ^a   Jirka, Silvana M G ^a   Ten Broeke, Bradley R ^a   Schultes, Erik A ^a   Aguilera, Begoña ^b   Pang, Kar Him ^b   Heemskerk, Hans ^a   Aartsma Rus, Annemieke ^a   Van Ommen, Gertjan J ^a   Den Dunnen, Johan T ^a  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

^b Prosensa Therapeutics   (Netherlands)

Author keywords

Bone; Drug targeting; Next generation sequencing; Phage display

Indexed keywords

BACTERIOPHAGES; BINDERS; BONE; CLONING; PEPTIDES;

DRUG-TARGETING; HIGH-AFFINITY PEPTIDES; LIVE-CELL IMAGING; NEXT-GENERATION SEQUENCING; OSTEOBLAST CELLS; PHAGE DISPLAY LIBRARIES; PHAGE DISPLAY SCREENING; SPECIFIC BINDERS;

PHAGE DISPLAY;

ANIMAL CELL; ARTICLE; BINDING AFFINITY; BIOPANNING; GENE AMPLIFICATION; MOLECULAR CLONING; MOLECULAR IMAGING; NONHUMAN; OSTEOBLAST; PEPTIDE LIBRARY; PHAGE DISPLAY; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 84859709933     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2011.11.005     Document Type: Article

References (24)

1. G.P. Smith, Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface, Science 228 (1985) 1315-1317. (Pubitemid 15000355)
2. T. Bratkovic, Progress in phage display: evolution of the technique and its application, Cell Mol. Life Sci. 67 (2010) 749-767.
3. Y. Georgieva, Z. Konthur, Design and screening of m13 phage display cDNA libraries, Molecules 16 (2011) 1667-1681.
4. C. Hamers-Casterman, T. Atarhouch, S. Muyldermans, G. Robinson, C. Hamers, E.B. Songa, N. Bendahman, R. Hamers, Naturally occurring antibodies devoid of light chains, Nature 363 (1993) 446-448. (Pubitemid 23179389)
5. M. Vodnik, U. Zager, B. Strukelj, M. Lunder, Phage display: selecting straws instead of a needle from a haystack, Molecules 16 (2011) 790-817.
6. L.A. Brammer, B. Bolduc, J.L. Kass, K.M. Felice, C.J. Noren, M.F. Hall, A target-unrelated peptide in an M13 phage display library traced to an advantageous mutation in the gene II ribosome-binding site, Anal. Biochem. 373 (2008) 88-98. (Pubitemid 350253150)
7. T. Shtatland, D. Guettler, M. Kossodo, M. Pivovarov, R. Weissleder, PepBank - a database of peptides based on sequence text mining and public peptide data sources, BMC Bioinformatics 8 (2007) 280.
8. J. Huang, B. Ru, S. Li, H. Lin, F.B. Guo, SAROTUP: scanner and reporter of target-unrelated peptides, J. Biomed. Biotechnol. (2010), doi:10.1155/2010/101932.
9. D.R. Bentley, Whole-genome re-sequencing, Curr. Opin. Genet. Dev. 16 (2006) 545-552. (Pubitemid 44738530)
10. M. Margulies, M. Egholm, W.E. Altman, S. Attiya, J.S. Bader, L.A. Bemben, J. Berka, M.S. Braverman, Y.J. Chen, Z. Chen, S.B. Dewell, L. Du, J.M. Fierro, X.V. Gomes, B.C. Godwin, W. He, S. Helgesen, C.H. Ho, G.P. Irzyk, S.C. Jando, M.L. Alenquer, T.P. Jarvie, K.B. Jirage, J.B. Kim, J.R. Knight, J.R. Lanza, J.H. Leamon, S.M. Lefkowitz, M. Lei, J. Li, K.L. Lohman, H. Lu, V.B. Makhijani, K.E. McDade, M.P. McKenna, E.W. Myers, E. Nickerson, J.R. Nobile, R. Plant, B.P. Puc, M.T. Ronan, G.T. Roth, G.J. Sarkis, J.F. Simons, J.W. Simpson, M. Srinivasan, K.R. Tartaro, A. Tomasz, K.A. Vogt, G.A. Volkmer, S.H. Wang, Y. Wang, M.P. Weiner, P. Yu, R.F. Begley, J.M. Rothberg, Genome sequencing in microfabricated high-density picolitre reactors, Nature 437 (2005) 376-380. (Pubitemid 41613494)
11. E. Dias-Neto, D.N. Nunes, R.J. Giordano, J. Sun, G.H. Botz, K. Yang, J.C. Setubal, R. Pasqualini, W. Arap, Next-generation phage display: integrating and comparing available molecular tools to enable cost-effective high-throughput analysis, PLoS One 4 (2009) e8338.
12. U. Ravn, F. Gueneau, L. Baerlocher, M. Osteras, M. Desmurs, P. Malinge, G. Magistrelli, L. Farinelli, M.H. Kosco-Vilbois, N. Fischer, By-passing in vitro screening - Next generation sequencing technologies applied to antibody display and in silico candidate selection, Nucleic Acids Res. 38 (2010) e193.
13. S.T. Reddy, X. Ge, A.E. Miklos, R.A. Hughes, S.H. Kang, K.H. Hoi, C. Chrysostomou, S.P. Hunicke-Smith, B.L. Iverson, P.W. Tucker, A.D. Ellington, G. Georgiou, Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells, Nat. Biotechnol. 28 (2010) 965-969.
14. M.M. Deckers, M. Karperien, C. van der Bent, T. Yamashita, S.E. Papapoulos, C.W. Lowik, Expression of vascular endothelial growth factors and their receptors during osteoblast differentiation, Endocrinology 141 (2000) 1667-1674. (Pubitemid 32274395)
15. Z.C. Dang, R.L. van Bezooijen, M. Karperien, S.E. Papapoulos, C.W. Lowik, Exposure of KS483 cells to estrogen enhances osteogenesis and inhibits adipogenesis, J. Bone Miner. Res. 17 (2002) 394-405. (Pubitemid 34171754)
16. D.J. de Gorter, M. van Dinther, O. Korchynskyi, P. ten Dijke, Biphasic effects of transforming growth factor beta on bone morphogenetic protein-induced osteoblast differentiation, J. Bone Miner. Res. 26 (2011) 1178-1187.
17. P.A. 't Hoen, Y. Ariyurek, H.H. Thygesen, E. Vreugdenhil, R.H. Vossen, R.X. de Menezes, J.M. Boer, G.J. van Ommen, J.T. den Dunnen, Deep sequencing-based expression analysis shows major advances in robustness, resolution, and interlab portability over five microarray platforms, Nucleic Acids Res. 36 (2008) e141.
18. T. Yamashita, H. Ishii, K. Shimoda, T.K. Sampath, T. Katagiri, M. Wada, T. Osawa, T. Suda, Subcloning of three osteoblastic cell lines with distinct differentiation phenotypes from the mouse osteoblastic cell line KS-4, Bone 19 (1996) 429-436.
19. L.R. Krumpe, A.J. Atkinson, G.W. Smythers, A. Kandel, K.M. Schumacher, J.B. McMahon, L. Makowski, T. Mori, T7 lytic phage-displayed peptide libraries exhibit less sequence bias than M13 filamentous phage-displayed peptide libraries, Proteomics 6 (2006) 4210-4222. (Pubitemid 44277024)
20. T. Serizawa, P. Techawanitchai, H. Matsuno, Isolation of peptides that can recognize syndiotactic polystyrene, ChemBioChem 8 (2007) 989-993. (Pubitemid 47183615)
21. R. Derda, S.K. Tang, S.C. Li, S. Ng, W. Matochko, M.R. Jafari, Diversity of phage-displayed libraries of peptides during panning and amplification, Molecules 16 (2011) 1776-1803.
22. R. Derda, S.K. Tang, G.M. Whitesides, Uniform amplification of phage with different growth characteristics in individual compartments consisting of monodisperse droplets, Angew. Chem. Int. Ed. Engl. 49 (2010) 5301-5304.
23. R. Di Niro, A.M. Sulic, F. Mignone, S. D'Angelo, R. Bordoni, M. Iacono, R. Marzari, T. Gaiotto, M. Lavric, A.R. Bradbury, L. Biancone, D. Zevin-Sonkin, G. De Bellis, C. Santoro, D. Sblattero, Rapid interactome profiling by massive sequencing, Nucleic Acids Res. 38 (2010) e110.
24. L.M. Work, S.A. Nicklin, N.J. Brain, K.L. Dishart, D.J. Von Seggern, M. Hallek, H. Buning, A.H. Baker, Development of efficient viral vectors selective for vascular smooth muscle cells, Mol. Ther. 9 (2004) 198-208. (Pubitemid 38256546)