-
1
-
-
84855937877
-
Active and total microbial communities in forest soil are largely different and highly stratified during decomposition
-
Baldrian P, Kolařík M, Štursová M et al. (2012) Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME Journal, 6, 248-258.
-
(2012)
ISME Journal
, vol.6
, pp. 248-258
-
-
Baldrian, P.1
Kolařík, M.2
Štursová, M.3
-
2
-
-
84871772513
-
Estimation of fungal biomass in forest litter and soil
-
Baldrian P, Větrovský T, Cajthaml T et al. (2013) Estimation of fungal biomass in forest litter and soil. Fungal Ecology, 6, 1-11.
-
(2013)
Fungal Ecology
, vol.6
, pp. 1-11
-
-
Baldrian, P.1
Větrovský, T.2
Cajthaml, T.3
-
3
-
-
77954336858
-
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
-
Bellemain E, Carlsen T, Brochmann C et al. (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiology, 10, 189.
-
(2010)
BMC Microbiology
, vol.10
, pp. 189
-
-
Bellemain, E.1
Carlsen, T.2
Brochmann, C.3
-
5
-
-
79952741082
-
The fungi: 1, 2, 3.. 5.1 million species?
-
Blackwell M (2011) The fungi: 1, 2, 3.. 5.1 million species? American Journal of Botany, 98, 426-438.
-
(2011)
American Journal of Botany
, vol.98
, pp. 426-438
-
-
Blackwell, M.1
-
6
-
-
70349482733
-
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity
-
Buéé M, Reich M, Murat C et al. (2009) 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytologist, 184, 449-456.
-
(2009)
New Phytologist
, vol.184
, pp. 449-456
-
-
Buéé, M.1
Reich, M.2
Murat, C.3
-
7
-
-
77953316168
-
Dioszegia antarctica sp. nov. and Dioszegia cryoxerica sp. nov., psychrophilic basidiomycetous yeasts from polar desert soils in Antarctica
-
Connell LB, Redman R, Rodriguez R et al. (2010) Dioszegia antarctica sp. nov. and Dioszegia cryoxerica sp. nov., psychrophilic basidiomycetous yeasts from polar desert soils in Antarctica. International Journal for Systematic and Evolutionary Microbiology, 60, 1466-1472.
-
(2010)
International Journal for Systematic and Evolutionary Microbiology
, vol.60
, pp. 1466-1472
-
-
Connell, L.B.1
Redman, R.2
Rodriguez, R.3
-
8
-
-
65649089819
-
Quantitative detection and monitoring of Colletotrichum acutatum in strawberry leaves using real-time PCR
-
Debode J, Van Hemelrijck W, Baeyen S et al. (2009) Quantitative detection and monitoring of Colletotrichum acutatum in strawberry leaves using real-time PCR. Plant Pathology, 58, 504-514.
-
(2009)
Plant Pathology
, vol.58
, pp. 504-514
-
-
Debode, J.1
Van Hemelrijck, W.2
Baeyen, S.3
-
9
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
10
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics, 27, 2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
11
-
-
77951498638
-
Experimental factors affecting PCR-based estimates of microbial species richness and evenness
-
Engelbrektson A, Kunin V, Wrighton KC et al. (2010) Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME Journal, 4, 642-647.
-
(2010)
ISME Journal
, vol.4
, pp. 642-647
-
-
Engelbrektson, A.1
Kunin, V.2
Wrighton, K.C.3
-
12
-
-
79955014720
-
Finding single copy genes out of sequenced genomes for multilocus phylogenetics in non-model fungi
-
Feau N, Decourcelle T, Husson C, Desprez-Loustau ML, Dutech C (2011) Finding single copy genes out of sequenced genomes for multilocus phylogenetics in non-model fungi. PLoS ONE, 6, e18803.
-
(2011)
PLoS ONE
, vol.6
, pp. e18803
-
-
Feau, N.1
Decourcelle, T.2
Husson, C.3
Desprez-Loustau, M.L.4
Dutech, C.5
-
13
-
-
70849121282
-
Evidence that chytrids dominate fungal communities in high-elevation soils
-
Freeman KR, Martin AP, Karki D et al. (2009) Evidence that chytrids dominate fungal communities in high-elevation soils. Proceedings of the National Academy of Sciences, USA, 106, 18315-18320.
-
(2009)
Proceedings of the National Academy of Sciences, USA
, vol.106
, pp. 18315-18320
-
-
Freeman, K.R.1
Martin, A.P.2
Karki, D.3
-
14
-
-
84856563821
-
Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
-
Gihring TM, Green SJ, Schadt CW (2012) Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes. Environmental Microbiology, 14, 285-290.
-
(2012)
Environmental Microbiology
, vol.14
, pp. 285-290
-
-
Gihring, T.M.1
Green, S.J.2
Schadt, C.W.3
-
15
-
-
84875054478
-
Evaluation of the authenticity of a highly novel environmental sequence from boreal forest soil using ribosomal RNA secondary structure modeling
-
Glass DJ, Takebayashi N, Olson LE, Taylor DL (2013) Evaluation of the authenticity of a highly novel environmental sequence from boreal forest soil using ribosomal RNA secondary structure modeling. Molecular Phylogenetics and Evolution, 67, 234-245.
-
(2013)
Molecular Phylogenetics and Evolution
, vol.67
, pp. 234-245
-
-
Glass, D.J.1
Takebayashi, N.2
Olson, L.E.3
Taylor, D.L.4
-
16
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59, 307-321.
-
(2010)
Systematic Biology
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
-
17
-
-
66149104807
-
Strain-dependent variation in 18S ribosomal DNA copy numbers in Aspergillus fumigatus
-
Herrera ML, Vallor AC, Gelfond JA, Patterson TF, Wickes BL (2009) Strain-dependent variation in 18S ribosomal DNA copy numbers in Aspergillus fumigatus. Journal of Clinical Microbiology, 47, 1325-1332.
-
(2009)
Journal of Clinical Microbiology
, vol.47
, pp. 1325-1332
-
-
Herrera, M.L.1
Vallor, A.C.2
Gelfond, J.A.3
Patterson, T.F.4
Wickes, B.L.5
-
18
-
-
34250341823
-
A higher-level phylogenetic classification of the Fungi
-
Hibbett DS, Binder M, Bischoff JF et al. (2007) A higher-level phylogenetic classification of the Fungi. Mycological Research, 111, 509-547.
-
(2007)
Mycological Research
, vol.111
, pp. 509-547
-
-
Hibbett, D.S.1
Binder, M.2
Bischoff, J.F.3
-
19
-
-
84872503635
-
β-tubulin paralogue tubC is frequently misidentified as the benA gene in Aspergillus section Nigri taxonomy: primer specificity testing and taxonomic consequences
-
Hubka V, Kolařík M (2012) β-tubulin paralogue tubC is frequently misidentified as the benA gene in Aspergillus section Nigri taxonomy: primer specificity testing and taxonomic consequences. Persoonia, 29, 1-10.
-
(2012)
Persoonia
, vol.29
, pp. 1-10
-
-
Hubka, V.1
Kolařík, M.2
-
20
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environmental Microbiology, 12, 1889-1898.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.M.2
Morrison, H.G.3
Sogin, M.L.4
-
21
-
-
84869886141
-
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
-
Ihrmark K, Bödeker IT, Cruz-Martinez K et al. (2012) New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities. FEMS Microbiology Ecology, 82, 666-677.
-
(2012)
FEMS Microbiology Ecology
, vol.82
, pp. 666-677
-
-
Ihrmark, K.1
Bödeker, I.T.2
Cruz-Martinez, K.3
-
22
-
-
33750329972
-
Reconstructing the early evolution of Fungi using a six-gene phylogeny
-
James TY, Kauff F, Schoch CL et al. (2006) Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature, 443, 818-822.
-
(2006)
Nature
, vol.443
, pp. 818-822
-
-
James, T.Y.1
Kauff, F.2
Schoch, C.L.3
-
23
-
-
79958294748
-
Discovery of novel intermediate forms redefines the fungal tree of life
-
Jones MDM, Forn I, Gadelha C et al. (2011) Discovery of novel intermediate forms redefines the fungal tree of life. Nature, 474, 200-203.
-
(2011)
Nature
, vol.474
, pp. 200-203
-
-
Jones, M.D.M.1
Forn, I.2
Gadelha, C.3
-
24
-
-
33847281506
-
Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data
-
Jumpponen A (2007) Soil fungal communities underneath willow canopies on a primary successional glacier forefront: rDNA sequence results can be affected by primer selection and chimeric data. Microbial Ecology, 53, 233-246.
-
(2007)
Microbial Ecology
, vol.53
, pp. 233-246
-
-
Jumpponen, A.1
-
25
-
-
68049142320
-
Multiple Alignment of DNA Sequences with MAFFT
-
In: (ed Posada D), Humana Press Inc., Totowa.
-
Katoh K, Asimenos G, Toh H (2009) Multiple Alignment of DNA Sequences with MAFFT. In: Bioinformatics for DNA Sequence Analysis(ed Posada D), pp. 39-46. Humana Press Inc., Totowa.
-
(2009)
Bioinformatics for DNA Sequence Analysis
, pp. 39-46
-
-
Katoh, K.1
Asimenos, G.2
Toh, H.3
-
26
-
-
0041731978
-
Ribosomal DNA variation, recombination and inheritance in the basidiomycete Trichaptum abietinum: Implications for reticulate evolution
-
Kåuserud H, Schumacher T (2003) Ribosomal DNA variation, recombination and inheritance in the basidiomycete Trichaptum abietinum: Implications for reticulate evolution. Heredity, 91, 163-172.
-
(2003)
Heredity
, vol.91
, pp. 163-172
-
-
Kåuserud, H.1
Schumacher, T.2
-
27
-
-
7444263971
-
A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1 alpha
-
Keeling PJ, Inagaki Y (2004) A class of eukaryotic GTPase with a punctate distribution suggesting multiple functional replacements of translation elongation factor 1 alpha. Proceedings of the National Academy of Sciences, USA, 101, 15380-15385.
-
(2004)
Proceedings of the National Academy of Sciences, USA
, vol.101
, pp. 15380-15385
-
-
Keeling, P.J.1
Inagaki, Y.2
-
28
-
-
84863564562
-
Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi
-
Kiss L (2012) Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi. Proceedings of the National Academy of Sciences, USA, 109, E1811.
-
(2012)
Proceedings of the National Academy of Sciences, USA
, vol.109
, pp. E1811
-
-
Kiss, L.1
-
29
-
-
84856534511
-
Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level
-
Kruger M, Kruger C, Walker C, Stockinger H, Schussler A (2012) Phylogenetic reference data for systematics and phylotaxonomy of arbuscular mycorrhizal fungi from phylum to species level. New Phytologist, 193, 970-984.
-
(2012)
New Phytologist
, vol.193
, pp. 970-984
-
-
Kruger, M.1
Kruger, C.2
Walker, C.3
Stockinger, H.4
Schussler, A.5
-
30
-
-
73349110099
-
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
-
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environmental Microbiology, 12, 118-123.
-
(2010)
Environmental Microbiology
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
31
-
-
84878360700
-
Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide
-
Lindahl BD, Nilsson RH, Tedersoo L et al. (2013) Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide. New Phytologist, 199, 288-299.
-
(2013)
New Phytologist
, vol.199
, pp. 288-299
-
-
Lindahl, B.D.1
Nilsson, R.H.2
Tedersoo, L.3
-
32
-
-
80051698839
-
Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus
-
Lindner DL, Banik MT (2011) Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus. Mycologia, 103, 731-740.
-
(2011)
Mycologia
, vol.103
, pp. 731-740
-
-
Lindner, D.L.1
Banik, M.T.2
-
33
-
-
84885642542
-
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
-
Lindner DL, Carlsen T, Nilsson RH et al. (2013) Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi. Ecology and Evolution, 3, 1751-1764.
-
(2013)
Ecology and Evolution
, vol.3
, pp. 1751-1764
-
-
Lindner, D.L.1
Carlsen, T.2
Nilsson, R.H.3
-
34
-
-
1842532972
-
Body plan evolution of ascomycetes, as inferred from an RNA polymerase II, phylogeny
-
Liu YJ, Hall BD (2004) Body plan evolution of ascomycetes, as inferred from an RNA polymerase II, phylogeny. Proceedings of the National Academy of Sciences, USA, 101, 4507-4512.
-
(2004)
Proceedings of the National Academy of Sciences, USA
, vol.101
, pp. 4507-4512
-
-
Liu, Y.J.1
Hall, B.D.2
-
35
-
-
84894326764
-
Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact?
-
Lucking R, Lawrey JD, Gillevet PM et al. (2014) Multiple ITS haplotypes in the genome of the lichenized basidiomycete Cora inversa (Hygrophoraceae): fact or artifact? Journal of Molecular Evolution, 78, 148-162.
-
(2014)
Journal of Molecular Evolution
, vol.78
, pp. 148-162
-
-
Lucking, R.1
Lawrey, J.D.2
Gillevet, P.M.3
-
36
-
-
84864460685
-
Defining the core Arabidopsis thaliana root microbiome
-
Lundberg DS, Lebeis SL, Paredes SH et al. (2012) Defining the core Arabidopsis thaliana root microbiome. Nature, 488, 86-90.
-
(2012)
Nature
, vol.488
, pp. 86-90
-
-
Lundberg, D.S.1
Lebeis, S.L.2
Paredes, S.H.3
-
37
-
-
32044471897
-
Assembling the fungal tree of life: progress, classification and evolution of subcellular traits
-
Lutzoni F, Kauff F, Cox CJ et al. (2004) Assembling the fungal tree of life: progress, classification and evolution of subcellular traits. American Journal of Botany, 91, 1446-1480.
-
(2004)
American Journal of Botany
, vol.91
, pp. 1446-1480
-
-
Lutzoni, F.1
Kauff, F.2
Cox, C.J.3
-
39
-
-
14144255880
-
Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)
-
Matheny PB (2005) Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Molecular Phylogenetics and Evolution, 35, 1-20.
-
(2005)
Molecular Phylogenetics and Evolution
, vol.35
, pp. 1-20
-
-
Matheny, P.B.1
-
40
-
-
45749142504
-
Intraspecific ITS variability in the Kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification
-
Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson KH (2008) Intraspecific ITS variability in the Kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evolutionary Bioinformatics, 4, 193-201.
-
(2008)
Evolutionary Bioinformatics
, vol.4
, pp. 193-201
-
-
Nilsson, R.H.1
Kristiansson, E.2
Ryberg, M.3
Hallenberg, N.4
Larsson, K.H.5
-
41
-
-
67149109995
-
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
-
Nilsson RH, Ryberg M, Abarenkov K, Sjokvist E, Kristiansson E (2009) The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. FEMS Microbiology Letters, 296, 97-101.
-
(2009)
FEMS Microbiology Letters
, vol.296
, pp. 97-101
-
-
Nilsson, R.H.1
Ryberg, M.2
Abarenkov, K.3
Sjokvist, E.4
Kristiansson, E.5
-
42
-
-
25144516095
-
Fungal community analysis by large-scale sequencing of environmental samples
-
O'Brien HE, Parrent JL, Jackson JA, Moncalvo J-M, Vilgalys R (2005) Fungal community analysis by large-scale sequencing of environmental samples. Applied and Environmental Microbiology, 71, 5544-5550.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 5544-5550
-
-
O'Brien, H.E.1
Parrent, J.L.2
Jackson, J.A.3
Moncalvo, J.-M.4
Vilgalys, R.5
-
43
-
-
70349525156
-
Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest
-
Öpik M, Metsis M, Daniell T, Zobel M, Moora M (2009) Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytologist, 184, 424-437.
-
(2009)
New Phytologist
, vol.184
, pp. 424-437
-
-
Öpik, M.1
Metsis, M.2
Daniell, T.3
Zobel, M.4
Moora, M.5
-
44
-
-
77951945504
-
Identifying biologically relevant differences between metagenomic communities
-
Parks DH, Beiko RG (2010) Identifying biologically relevant differences between metagenomic communities. Bioinformatics, 26, 715-721.
-
(2010)
Bioinformatics
, vol.26
, pp. 715-721
-
-
Parks, D.H.1
Beiko, R.G.2
-
45
-
-
53849104257
-
The rational exploration of microbial diversity
-
Quince C, Curtis TP, Sloan WT (2008) The rational exploration of microbial diversity. ISME Journal, 2, 997-1006.
-
(2008)
ISME Journal
, vol.2
, pp. 997-1006
-
-
Quince, C.1
Curtis, T.P.2
Sloan, W.T.3
-
46
-
-
29344458487
-
Calibration of quantitative real-time Taqman PCR by correlation with hyphal biomass and its copies in mycelia of Piloderma croceum
-
Raidl S, Bonfigli R, Agerer R (2005) Calibration of quantitative real-time Taqman PCR by correlation with hyphal biomass and its copies in mycelia of Piloderma croceum. Plant Biology, 7, 713-717.
-
(2005)
Plant Biology
, vol.7
, pp. 713-717
-
-
Raidl, S.1
Bonfigli, R.2
Agerer, R.3
-
47
-
-
43049150072
-
Innovative methods for soil DNA purification tested in soils with widely differing characteristics
-
Sagova-Mareckova M, Cermak L, Novotna J et al. (2008) Innovative methods for soil DNA purification tested in soils with widely differing characteristics. Applied and Environmental Microbiology, 74, 2902-2907.
-
(2008)
Applied and Environmental Microbiology
, vol.74
, pp. 2902-2907
-
-
Sagova-Mareckova, M.1
Cermak, L.2
Novotna, J.3
-
48
-
-
78049240050
-
The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies
-
Schloss PD (2010) The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies. PLoS Computational Biology, 6, e1000844.
-
(2010)
PLoS Computational Biology
, vol.6
, pp. e1000844
-
-
Schloss, P.D.1
-
49
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Applied and Environmental Microbiology, 75, 7537-7541.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
50
-
-
84859972408
-
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
-
Schoch CL, Seifert KA, Huhndorf S et al. (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences, USA, 109, 6241-6246.
-
(2012)
Proceedings of the National Academy of Sciences, USA
, vol.109
, pp. 6241-6246
-
-
Schoch, C.L.1
Seifert, K.A.2
Huhndorf, S.3
-
51
-
-
54149097573
-
Intragenomic variation of fungal ribosomal genes is higher than previously thought
-
Simon UK, Weiss M (2008) Intragenomic variation of fungal ribosomal genes is higher than previously thought. Molecular Phylogenetics and Evolution, 25, 2251-2254.
-
(2008)
Molecular Phylogenetics and Evolution
, vol.25
, pp. 2251-2254
-
-
Simon, U.K.1
Weiss, M.2
-
52
-
-
36448929071
-
Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland
-
Smith ME, Douhan GW, Rizzo DM (2007) Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a Quercus woodland. Mycorrhiza, 18, 15-22.
-
(2007)
Mycorrhiza
, vol.18
, pp. 15-22
-
-
Smith, M.E.1
Douhan, G.W.2
Rizzo, D.M.3
-
54
-
-
77956283658
-
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
-
Tedersoo L, Nilsson RH, Abarenkov K et al. (2010) 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytologist, 188, 291-301.
-
(2010)
New Phytologist
, vol.188
, pp. 291-301
-
-
Tedersoo, L.1
Nilsson, R.H.2
Abarenkov, K.3
-
55
-
-
84888007223
-
Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED
-
Větrovský T, Baldrian P (2013) Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED. Biology and Fertility of Soils, 49, 1027-1037.
-
(2013)
Biology and Fertility of Soils
, vol.49
, pp. 1027-1037
-
-
Větrovský, T.1
Baldrian, P.2
-
56
-
-
84875162399
-
Fungal community on decomposing leaf litter undergoes rapid successional changes
-
Voříšková J, Baldrian P (2013) Fungal community on decomposing leaf litter undergoes rapid successional changes. ISME Journal, 7, 477-486.
-
(2013)
ISME Journal
, vol.7
, pp. 477-486
-
-
Voříšková, J.1
Baldrian, P.2
-
57
-
-
84888292879
-
Seasonal dynamics of fungal communities in a temperate oak forest soil
-
Voříšková J, Brabcová V, Cajthaml T, Baldrian P (2014) Seasonal dynamics of fungal communities in a temperate oak forest soil. New Phytologist, 201, 269-278.
-
(2014)
New Phytologist
, vol.201
, pp. 269-278
-
-
Voříšková, J.1
Brabcová, V.2
Cajthaml, T.3
Baldrian, P.4
-
58
-
-
20444466075
-
Intrastrain internal transcribed spacer heterogeneity in Ganoderma species
-
Wang D-M, Yao Y-J (2005) Intrastrain internal transcribed spacer heterogeneity in Ganoderma species. Canadian Journal of Microbiology, 51, 113-121.
-
(2005)
Canadian Journal of Microbiology
, vol.51
, pp. 113-121
-
-
Wang, D.-M.1
Yao, Y.-J.2
-
59
-
-
0000432452
-
Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
-
Academic Press, New York.
-
White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. . PCR Protocols: A guide to methods and applications, pp. 315-322. Academic Press, New York.
-
(1990)
. PCR Protocols: A guide to methods and applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.2
Lee, S.3
Taylor, J.4
-
60
-
-
68549130740
-
Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys
-
Youssef N, Sheik CS, Krumholz LR et al. (2009) Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Applied and Environmental Microbiology, 75, 5227-5236.
-
(2009)
Applied and Environmental Microbiology
, vol.75
, pp. 5227-5236
-
-
Youssef, N.1
Sheik, C.S.2
Krumholz, L.R.3
|