Pedobacter ardleyensis sp. Nov., Isolated from soil in Antarctica

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 11, 2015, Pages 3841-3846

  Da, Xuyang ^a   Jiang, Fan ^a   Chang, Xulu ^a   Ren, Lvzhi ^a   Qiu, Xia ^a   Kan, Wenjing ^a   Zhang, Yumin ^a   Deng, Sangsang ^a   Fang, Chengxiang ^a   Peng, Fang ^a,b  

^a WUHAN UNIVERSITY   (China)

^b Hubei Provincial Cooperative Innovation Center of Industrial Fermentation   (China)

Author keywords

[No Author keywords available]

Indexed keywords

PHOSPHATIDYLETHANOLAMINE; RNA 16S; SPHINGOLIPID;

ANTARCTICA; ARTICLE; BACTERIUM ISOLATION; DIFFERENTIATION; GENE SEQUENCE; NONHUMAN; PEDOBACTER; PEDOBACTER ARDLEYENSIS; PRIORITY JOURNAL; SOIL;

EID: 84955563657     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.000504     Document Type: Article

References (37)

1. An, D. S., Kim, S. G., Ten, L. N. & Cho, C. H. (2009). Pedobacter daechungensis sp. nov., from freshwater lake sediment in South Korea. Int J Syst Evol Microbiol 59, 69–72.
2. Asker, D., Beppu, T. & Ueda, K. (2008). Nubsella zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Sphingobacteriaceae isolated from freshwater. Int J Syst Evol Microbiol 58, 601–606.
3. Bauer, A. W., Kirby, W. M. M., Sherris, J. C. & Turck, M. (1966). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45, 493–496.
4. Bernardet, J. F., Nakagawa, Y. & Holmes, B. (2002). Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049–1070.
5. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861–1868.
6. Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21–33. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. H. Phillips. Washington, DC: American Society for Microbiology.
7. Dorsch, M., Lane, D. & Stackebrandt, E. (1992). Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences. Int J Syst Bacteriol 42, 58–63.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.
9. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406–416.
10. Gallego, V., García, M. T. & Ventosa, A. (2006). Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter. Int J Syst Evol Microbiol 56, 1853–1858.
11. Gordon, N. S., Valenzuela, A., Adams, S. M., Ramsey, P. W., Pollock, J. L., Holben, W. E. & Gannon, J. E. (2009). Pedobacter nyackensis sp. nov., Pedobacter alluvionis sp. nov. and Pedobacter borealis sp. nov., isolated from Montana flood-plain sediment and forest soil. Int J Syst Evol Microbiol 59, 1720–1726.
12. Hwang, C. Y., Choi, D. H. & Cho, B. C. (2006). Pedobacter roseus sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter. Int J Syst Evol Microbiol 56, 1831–1836.
13. Kato, M., Muto, Y., Tanaka-Bandoh, K., Watanabe, K. & Ueno, K. (1995). Sphingolipid composition in Bacteroides species. Anaerobe 1, 135–139.
14. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S. & Lee, J.-H. (2012). & other authors Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716–721.
15. Kim, D. U., Kim, Y. J., Shin, D. H., Weon, H. Y., Kwon, S. W., Seong, C. N. & Ka, J. O. (2013). Pedobacter namyangjuensis sp. nov. isolated from soil and reclassification of Nubsella zeaxanthinifaciens Asker et al. 2008 as Pedobacter zeaxanthinifaciens comb. nov. J Microbiol 51, 25–30.
16. Kwon, S. W., Kim, B. Y., Lee, K. H., Jang, K. Y., Seok, S. J., Kwon, J. S., Kim, W. G. & Weon, H. Y. (2007). Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris). Int J Syst Evol Microbiol 57, 480–484.
17. Kwon, S. W., Son, J. A., Kim, S. J., Kim, Y. S., Park, I. C., Bok, J. I. & Weon, H. Y. (2011). Pedobacter rhizosphaerae sp. nov. and Pedobacter soli sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris). Int J Syst Evol Microbiol 61, 2874–2879.
18. Lee, H. G., Kim, S. G., Im, W. T., Oh, H. M. & Lee, S. T. (2009). Pedobacter composti sp. nov., isolated from compost. Int J Syst Evol Microbiol 59, 345–349.
19. Luo, X., Wang, Z., Dai, J., Zhang, L., Li, J., Tang, Y., Wang, Y. & Fang, C. (2010). Pedobacter glucosidilyticus sp. nov., isolated from dry riverbed soil. Int J Syst Evol Microbiol 60, 229–233.
20. Margesin, R. & Shivaji, S. (2011). Pedobacter Steyn, Segers, Vancanneyt, Sandra, Kersters and Joubert 1998, 171VP. In Bergey’s Manual of Systematic Bacteriology, vol. 4, 2nd edn., pp. 339–351. Edited by N. R. Krieg, W. Ludwig, W. Whitman, B. P. Hedlund, B. J. Paster, J. T. Staley, N. Ward, D. Brown & A. Parte. New York: Springer.
21. Margesin, R. & Zhang, D. C. (2013). Pedobacter ruber sp. nov., a psychrophilic bacterium isolated from soil. Int J Syst Evol Microbiol 63, 339–344.
22. Margesin, R., Spröer, C., Schumann, P. & Schinner, F. (2003). Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite. Int J Syst Evol Microbiol 53, 1291–1296.
23. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.
24. Roh, S. W., Quan, Z. X., Nam, Y. D., Chang, H. W., Kim, K. H., Kim, M. K., Im, W. T., Jin, L., Kim, S. H. & other authors (2008). Pedobacter agri sp. nov., from soil. Int J Syst Evol Microbiol 58, 1640–1643.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
26. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
27. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical note 101. Newark, DE: MIDI Inc.
28. Shivaji, S., Chaturvedi, P., Reddy, G. S. & Suresh, K. (2005). Pedobacter himalayensis sp. nov., from the Hamta glacier located in the Himalayan mountain ranges of India. Int J Syst Evol Microbiol 55, 1083–1088.
29. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Woods & N. R. Krieg. Washington, DC: American Society for Microbiology.
30. Steyn, P. L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165–177.
31. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731–2739.
32. Tang, Y., Wang, Y., Ji, S., Zhang, K., Dai, J., Zhang, L., Peng, F. & Fang, C. (2010). Pedobacter xinjiangensis sp. nov., from desert, Xinjiang. J Microbiol Biotechnol 20, 397–402.
33. Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199–202.
34. Vanparys, B., Heylen, K., Lebbe, L. & De Vos, P. (2005). Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum. Int J Syst Evol Microbiol 55, 1315–1318.
35. Xie, C. H. & Yokota, A. (2003). Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345–349.
36. Zhou, Z., Jiang, F., Wang, S., Peng, F., Dai, J., Li, W. & Fang, C. (2012). Pedobacter arcticus sp. nov., a facultative psychrophile isolated from Arctic soil, and emended descriptions of the genus Pedobacter, Pedobacter heparinus, Pedobacter daechungensis, Pedobacter terricola, Pedobacter glucosidilyticus and Pedobacter lentus. Int J Syst Evol Microbiol 62, 1963–1969.
37. Zimmermann, J. J., Langer, R. & Cooney, C. L. (1990). Specific plate assay for bacterial heparinase. Appl Environ Microbiol 56, 3593–3594.