Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 8, 2006, Pages 1853-1858

  Gallego, Virginia ^a   García, Maria Teresa ^a   Ventosa, Antonio ^a  

^a UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DRINKING WATER; FATTY ACID;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM EXAMINATION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BACTEROIDETES; DNA CONTENT; GENE SEQUENCE; GENOTYPE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PEDOBACTER; PEDOBACTER AQUATILIS; PEDOBACTER HEPARINUS; PEDOBACTER HIMALAYENSIS; PEDOBACTER PISCIUM; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPAIN; SPHINGOBACTERIACEAE; STRAIN DIFFERENCE; TAXONOMY; WATER QUALITY;

BACTEROIDETES; BASE COMPOSITION; FATTY ACIDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPAIN; SPECIES SPECIFICITY; WATER MICROBIOLOGY; WATER SUPPLY;

BACTERIA (MICROORGANISMS); BACTEROIDETES; NEGIBACTERIA; PEDOBACTER; PEDOBACTER AQUATILIS; PEDOBACTER HEPARINUS; PEDOBACTER HIMALAYENSIS; PEDOBACTER PISCIUM;

EID: 33747887963     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64176-0     Document Type: Article

References (24)

1. Bauer, A. W., Kirby, W. M. M., Sherris, J. C. & Turck, M. (1966). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45, 493-496.
2. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
3. Christensen, W. B. (1946). Urea decomposition as a means of differentiating Proteus and paracolon cultures from each other and from Salmonella and Shigella types. J Bacteriol 52, 461-466.
4. Cowan, S. T. & Steel, K. J. (1974). Manual for the Identification of Medical Bacteria. Cambridge: Cambridge University Press.
5. Felsenstein, J. (1991). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
6. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
7. Kersters, K., Hinz, K.-H., Hertle, A., Segers, P., Lievens, A., Siegmann, O. & De Ley, J. (1984). Bordetella avium sp. nov., isolated from the respiratory tracts of turkeys and other birds. Int J Syst Bacteriol 34, 56-70.
8. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
9. Kovács, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703-704.
10. Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
11. Margesin, R., Spröer, C., Schumann, P. & Schinner, F. (2003). Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite. Int J Syst Evol Microbiol 53, 1291-1296.
12. Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 3, 208-218.
13. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
14. Mellado, E., Moore, E. R. B., Nieto, J. J. & Ventosa, A. (1995). Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina and Deleya salina, and reclassification of V. eurihalina as Halomonas eurihalina comb. nov. Int J Syst Bacteriol 45, 712-716.
15. Miller, L. T. (1982). A single derivatization method for bacterial fatty acid methyl esters including hydroxy acids. J Clin Microbiol 16, 584-586.
16. Owen, R. J. & Hill, L. R. (1979). The estimation and base compositions, base pairing and genome size of bacterial deoxyribonucleic acids. In Identification Methods for Microbiologists, 2nd edn, pp. 217-296. Edited by F. A. Skinner & D. W. Lovelock. London: Academic Press.
17. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Shivaji, S., Chaturvedi, P., Reddy, G. S. N. & Suresh, K. (2005). Pedobacter himalayensis sp. nov., from the Hamta glacier located in the Himalayan mountain ranges of India. Int J Syst Evol Microbiol 55, 1083-1088.
20. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Steyn, P. L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165-177.
23. Takeuchi, M. & Yokota, A. (1992). Proposals of Sphingobacterium faecium sp. nov., Sphingobacterium piscium sp. nov., Sphingobacterium heparinum comb. nov. and two genospecies of the genus Sphingobacterium, and synonymy of Flavobacterium yabuuchiae and Sphingobacterium spiritivorum. J Gen Appl Microbiol 38, 465-482.
24. Vanparys, B., Heylen, K., Lebbe, L. & De Vos, P. (2005). Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum. Int J Syst Evol Microbiol 55, 1315-1318.