메뉴 건너뛰기




Volumn 7, Issue , 2016, Pages

Biochemical characterization of predicted Precambrian RuBisCO

Author keywords

[No Author keywords available]

Indexed keywords

CARBON DIOXIDE; ENZYME; RUBISCO ENZYME; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; RIBULOSEBISPHOSPHATE CARBOXYLASE;

EID: 84955449241     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms10382     Document Type: Article
Times cited : (99)

References (63)
  • 1
    • 38949093003 scopus 로고    scopus 로고
    • Palaeotemperature trend for Precambrian life inferred from resurrected proteins
    • Gaucher, E. A., Govindarajan, S. & Ganesh, O. K. Palaeotemperature trend for Precambrian life inferred from resurrected proteins. Nature 451, 704-707 (2008).
    • (2008) Nature , vol.451 , pp. 704-707
    • Gaucher, E.A.1    Govindarajan, S.2    Ganesh, O.K.3
  • 2
    • 37349069540 scopus 로고    scopus 로고
    • Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs
    • Tabita, F. R. Et al. Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiol. Mol. Biol. Rev. 71, 576-599 (2007).
    • (2007) Microbiol. Mol. Biol. Rev. , vol.71 , pp. 576-599
    • Tabita, F.R.1
  • 3
    • 84880685461 scopus 로고    scopus 로고
    • Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
    • Shih, P. M. & Matzke, N. J. Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins. Proc. Natl Acad. Sci. USA 110, 12355-12360 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 12355-12360
    • Shih, P.M.1    Matzke, N.J.2
  • 4
    • 0025573969 scopus 로고
    • A bangiophyte red alga from the Proterozoic of arctic Canada
    • Butterfield, N. J., Knoll, A. H. & Swett, K. A bangiophyte red alga from the Proterozoic of arctic Canada. Science 250, 104-107 (1990).
    • (1990) Science , vol.250 , pp. 104-107
    • Butterfield, N.J.1    Knoll, A.H.2    Swett, K.3
  • 5
    • 7444237566 scopus 로고    scopus 로고
    • The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
    • Douzery, E. J. P., Snell, E. A., Bapteste, E., Delsuc, F. & Philippe, H. The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? Proc. Natl Acad. Sci. USA 101, 15386-15391 (2004).
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 15386-15391
    • Douzery, E.J.P.1    Snell, E.A.2    Bapteste, E.3    Delsuc, F.4    Philippe, H.5
  • 7
    • 80052019696 scopus 로고    scopus 로고
    • Estimating the timing of early eukaryotic diversification with multigene molecular clocks
    • Parfrey, L. W., Lahr, D. J. G., Knoll, A. H. & Katz, L. A. Estimating the timing of early eukaryotic diversification with multigene molecular clocks. Proc. Natl Acad. Sci. USA 108, 13624-13629 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 13624-13629
    • Parfrey, L.W.1    Lahr, D.J.G.2    Knoll, A.H.3    Katz, L.A.4
  • 8
    • 0035607819 scopus 로고    scopus 로고
    • Geocarb III: A revised model of atmospheric CO2 over Phanerozoic time
    • Berner, R. A. & Kothavala, Z. Geocarb III: A revised model of atmospheric CO2 over Phanerozoic time. Am. J. Sci. 301, 182-204 (2001).
    • (2001) Am. J. Sci. , vol.301 , pp. 182-204
    • Berner, R.A.1    Kothavala, Z.2
  • 9
    • 0027914959 scopus 로고
    • Earth's early atmosphere
    • Kasting, J. F. Earth's early atmosphere. Science 259, 920-926 (1993).
    • (1993) Science , vol.259 , pp. 920-926
    • Kasting, J.F.1
  • 11
    • 0036326931 scopus 로고    scopus 로고
    • Evolution and diversity of CO2 concentrating mechanisms in cyanobacteria
    • Badger, M. R., Hanson, D. & Price, G. D. Evolution and diversity of CO2 concentrating mechanisms in cyanobacteria. Func. Plant Biol. 29, 161-173 (2002).
    • (2002) Func. Plant Biol. , vol.29 , pp. 161-173
    • Badger, M.R.1    Hanson, D.2    Price, G.D.3
  • 12
    • 77950441805 scopus 로고    scopus 로고
    • No climate paradox under the faint early Sun
    • Rosing, M. T., Bird, D. K., Sleep, N. H. & Bjerrum, C. J. No climate paradox under the faint early Sun. Nature 464, 744-747 (2010).
    • (2010) Nature , vol.464 , pp. 744-747
    • Rosing, M.T.1    Bird, D.K.2    Sleep, N.H.3    Bjerrum, C.J.4
  • 13
    • 33646239609 scopus 로고    scopus 로고
    • Precambrian paleosols and atmospheric CO2 levels
    • Sheldon, N. D. Precambrian paleosols and atmospheric CO2 levels. Precambr. Res. 147, 148-155 (2006).
    • (2006) Precambr. Res. , vol.147 , pp. 148-155
    • Sheldon, N.D.1
  • 14
    • 79957929150 scopus 로고    scopus 로고
    • Mineralogical constraints on Precambrian pCO2
    • Reinhard, C. T. & Planavsky, N. J. Mineralogical constraints on Precambrian pCO2. Nature 474, E1-E1 (2011).
    • (2011) Nature , vol.474 , pp. E1-E1
    • Reinhard, C.T.1    Planavsky, N.J.2
  • 15
    • 79957944831 scopus 로고    scopus 로고
    • Low pCO2 in the pore water, not in the Archean air
    • Dauphas, N. & Kasting, J. F. Low pCO2 in the pore water, not in the Archean air. Nature 474, E1-E1 (2011).
    • (2011) Nature , vol.474 , pp. E1-E1
    • Dauphas, N.1    Kasting, J.F.2
  • 16
    • 79957958346 scopus 로고    scopus 로고
    • Faint young Sun paradox remains
    • Goldblatt, C. & Zahnle, K. J. Faint young Sun paradox remains. Nature 474, E1-E1 (2011).
    • (2011) Nature , vol.474 , pp. E1-E1
    • Goldblatt, C.1    Zahnle, K.J.2
  • 17
    • 0141605050 scopus 로고    scopus 로고
    • High CO2 levels in the Proterozoic atmosphere estimated from analyses of individual microfossils
    • Kaufman, A. J. & Xiao, S. High CO2 levels in the Proterozoic atmosphere estimated from analyses of individual microfossils. Nature 425, 279-282 (2003).
    • (2003) Nature , vol.425 , pp. 279-282
    • Kaufman, A.J.1    Xiao, S.2
  • 18
    • 0029663540 scopus 로고    scopus 로고
    • Late Proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies
    • Canfield, D. E. & Teske, A. Late Proterozoic rise in atmospheric oxygen concentration inferred from phylogenetic and sulphur-isotope studies. Nature 382, 127-132 (1996).
    • (1996) Nature , vol.382 , pp. 127-132
    • Canfield, D.E.1    Teske, A.2
  • 19
    • 33746645151 scopus 로고    scopus 로고
    • The diversification of Paleozoic fire systems and fluctuations in atmospheric oxygen concentration
    • Scott, A. C. & Glasspool, I. J. The diversification of Paleozoic fire systems and fluctuations in atmospheric oxygen concentration. Proc. Natl Acad. Sci. USA 103, 10861-10865 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 10861-10865
    • Scott, A.C.1    Glasspool, I.J.2
  • 20
    • 77956276812 scopus 로고    scopus 로고
    • Phanerozoic concentrations of atmospheric oxygen reconstructed from sedimentary charcoal
    • Glasspool, I. J. & Scott, A. C. Phanerozoic concentrations of atmospheric oxygen reconstructed from sedimentary charcoal. Nat. Geosci. 3, 627-630 (2010).
    • (2010) Nat. Geosci. , vol.3 , pp. 627-630
    • Glasspool, I.J.1    Scott, A.C.2
  • 21
    • 50649123504 scopus 로고    scopus 로고
    • Limits for combustion in low O2 redefine paleoatmospheric predictions for the Mesozoic
    • Belcher, C. M. & McElwain, J. C. Limits for combustion in low O2 redefine paleoatmospheric predictions for the Mesozoic. Science 321, 1197-1200 (2008).
    • (2008) Science , vol.321 , pp. 1197-1200
    • Belcher, C.M.1    McElwain, J.C.2
  • 22
    • 0027008971 scopus 로고
    • Susceptibility of the early Earth to irreversible glaciation caused by carbon dioxide clouds
    • Caldeira, K. & Kasting, J. F. Susceptibility of the early Earth to irreversible glaciation caused by carbon dioxide clouds. Nature 359, 226-228 (1992).
    • (1992) Nature , vol.359 , pp. 226-228
    • Caldeira, K.1    Kasting, J.F.2
  • 23
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: Phylogenetic analysis by maximum likelihood
    • Yang, Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 24
    • 77955975654 scopus 로고    scopus 로고
    • Robustness of ancestral sequence reconstruction to phylogenetic uncertainty
    • Hanson-Smith, V., Kolaczkowski, B. & Thornton, J. W. Robustness of ancestral sequence reconstruction to phylogenetic uncertainty. Mol. Biol. Evol. 27, 1988-1999 (2010).
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1988-1999
    • Hanson-Smith, V.1    Kolaczkowski, B.2    Thornton, J.W.3
  • 25
    • 0022019381 scopus 로고
    • Subunit dissociation and reconstitution of ribulose-1, 5-bisphosphate carboxylase from Chromatium vinosum
    • Jordan, D. B. & Chollet, R. Subunit dissociation and reconstitution of ribulose-1, 5-bisphosphate carboxylase from Chromatium vinosum. Arch. Biochem. Biophys. 236, 487-496 (1985).
    • (1985) Arch. Biochem. Biophys. , vol.236 , pp. 487-496
    • Jordan, D.B.1    Chollet, R.2
  • 26
    • 0034914259 scopus 로고    scopus 로고
    • Form i Rubiscos from non-green algae are expressed abundantly but not assembled in tobacco chloroplasts
    • Whitney, S. M., Baldet, P., Hudson, G. S. & Andrews, T. J. Form I Rubiscos from non-green algae are expressed abundantly but not assembled in tobacco chloroplasts. Plant J. 26, 535-547 (2001).
    • (2001) Plant J. , vol.26 , pp. 535-547
    • Whitney, S.M.1    Baldet, P.2    Hudson, G.S.3    Andrews, T.J.4
  • 27
    • 77952990223 scopus 로고    scopus 로고
    • Rubisco activities, properties, and regulation in three different C4 grasses under drought
    • Carmo-Silva, A. E. Et al. Rubisco activities, properties, and regulation in three different C4 grasses under drought. J. Exp. Bot. 61, 2355-2366 (2010).
    • (2010) J. Exp. Bot. , vol.61 , pp. 2355-2366
    • Carmo-Silva, A.E.1
  • 28
    • 84914127006 scopus 로고    scopus 로고
    • The minimal CO2 concentrating mechanism of Prochlorococcus MED4 is effective and efficient
    • Hopkinson, B. M., Young, J. N., Tansik, A. L. & Binder, B. J. The minimal CO2 concentrating mechanism of Prochlorococcus MED4 is effective and efficient. Plant Physiol. 166, 2205-2217 (2014).
    • (2014) Plant Physiol. , vol.166 , pp. 2205-2217
    • Hopkinson, B.M.1    Young, J.N.2    Tansik, A.L.3    Binder, B.J.4
  • 29
    • 33646583168 scopus 로고    scopus 로고
    • Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized
    • Tcherkez, G. G. B., Farquhar, G. D. & Andrews, T. J. Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized. Proc. Natl Acad. Sci. USA 103, 7246-7251 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 7246-7251
    • Tcherkez, G.G.B.1    Farquhar, G.D.2    Andrews, T.J.3
  • 30
    • 0000602279 scopus 로고
    • Engineering Rubisco to change its catalytic properties
    • Bainbridge, G. Et al. Engineering Rubisco to change its catalytic properties. J. Exp. Bot. 46, 1269-1276 (1995).
    • (1995) J. Exp. Bot. , vol.46 , pp. 1269-1276
    • Bainbridge, G.1
  • 31
    • 1242344163 scopus 로고    scopus 로고
    • Would transformation of C3 crop plants with foreign Rubisco increase productivity? A computational analysis extrapolating from kinetic properties to canopy photosynthesis
    • Zhu, X. G., Portis, A. R. & Long, S. P. Would transformation of C3 crop plants with foreign Rubisco increase productivity? A computational analysis extrapolating from kinetic properties to canopy photosynthesis. Plant Cell Environ. 27, 155-165 (2004).
    • (2004) Plant Cell Environ. , vol.27 , pp. 155-165
    • Zhu, X.G.1    Portis, A.R.2    Long, S.P.3
  • 32
    • 77649245472 scopus 로고    scopus 로고
    • Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape
    • Savir, Y., Noor, E., Milo, R. & Tlusty, T. Cross-species analysis traces adaptation of Rubisco toward optimality in a low-dimensional landscape. Proc. Natl Acad. Sci. USA 107, 3475-3480 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 3475-3480
    • Savir, Y.1    Noor, E.2    Milo, R.3    Tlusty, T.4
  • 33
    • 0028085941 scopus 로고
    • High substrate specificity factor ribulose bisphosphate carboxylase/oxygenase from eukaryotic marine algae and properties of recombinant cyanobacterial Rubisco containing 'algal' residue modifications
    • Read, B. A. & Tabita, F. R. High substrate specificity factor ribulose bisphosphate carboxylase/oxygenase from eukaryotic marine algae and properties of recombinant cyanobacterial Rubisco containing 'algal' residue modifications. Arch. Biochem. Biophys. 312, 210-218 (1994).
    • (1994) Arch. Biochem. Biophys. , vol.312 , pp. 210-218
    • Read, B.A.1    Tabita, F.R.2
  • 34
    • 0028244044 scopus 로고
    • Mutations of an active site threonyl residue promote beta elimination and other side reactions of the enediol intermediate of the ribulose bisphosphate carboxylase reaction
    • Morell, M. K., Paul, K., O'Shea, N. J., Kane, H. J. & Andrews, T. J. Mutations of an active site threonyl residue promote beta elimination and other side reactions of the enediol intermediate of the ribulose bisphosphate carboxylase reaction. J. Biol. Chem. 269, 8091-8098 (1994).
    • (1994) J. Biol. Chem. , vol.269 , pp. 8091-8098
    • Morell, M.K.1    Paul, K.2    O'Shea, N.J.3    Kane, H.J.4    Andrews, T.J.5
  • 35
    • 0026643280 scopus 로고
    • A hybrid ribulose bisphosphate carboxylase/ oxygenase enzyme exhibiting a substantial increase in substrate specificity factor
    • Read, B. A. & Tabita, F. R. A hybrid ribulose bisphosphate carboxylase/ oxygenase enzyme exhibiting a substantial increase in substrate specificity factor. Biochemistry 31, 5553-5560 (1992).
    • (1992) Biochemistry , vol.31 , pp. 5553-5560
    • Read, B.A.1    Tabita, F.R.2
  • 36
    • 0037318701 scopus 로고    scopus 로고
    • CO2 concentrating mechanisms in cyanobacteria: Molecular components, their diversity and evolution
    • Badger, M. R. & Price, G. D. CO2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution. J. Exp. Bot. 54, 609-622 (2003).
    • (2003) J. Exp. Bot. , vol.54 , pp. 609-622
    • Badger, M.R.1    Price, G.D.2
  • 37
    • 44649180011 scopus 로고    scopus 로고
    • Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): Functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants
    • Price, G. D., Badger, M. R., Woodger, F. J. & Long, B. M. Advances in understanding the cyanobacterial CO2-concentrating-mechanism (CCM): functional components, Ci transporters, diversity, genetic regulation and prospects for engineering into plants. J. Exp. Bot. 59, 1441-1461 (2008).
    • (2008) J. Exp. Bot. , vol.59 , pp. 1441-1461
    • Price, G.D.1    Badger, M.R.2    Woodger, F.J.3    Long, B.M.4
  • 38
    • 0026090247 scopus 로고
    • In situ assay of ribulose-1, 5-bisphosphate carboxylase/oxygenase in Thiobacillus neapolitanus
    • Cannon, G. C., English, R. S. & Shively, J. M. In situ assay of ribulose-1, 5-bisphosphate carboxylase/oxygenase in Thiobacillus neapolitanus. J. Bacteriol. 173, 1565-1568 (1991).
    • (1991) J. Bacteriol. , vol.173 , pp. 1565-1568
    • Cannon, G.C.1    English, R.S.2    Shively, J.M.3
  • 39
    • 84889604825 scopus 로고    scopus 로고
    • Biogenesis of a bacterial organelle: The carboxysome assembly pathway
    • Cameron, J. C., Wilson, S. C., Bernstein, S. L. & Kerfeld, C. A. Biogenesis of a bacterial organelle: The carboxysome assembly pathway. Cell 155, 1131-1140 (2013).
    • (2013) Cell , vol.155 , pp. 1131-1140
    • Cameron, J.C.1    Wilson, S.C.2    Bernstein, S.L.3    Kerfeld, C.A.4
  • 40
    • 84876272531 scopus 로고    scopus 로고
    • Protein complexes are under evolutionary selection to assemble via ordered pathways
    • Marsh, J. A. Et al. Protein complexes are under evolutionary selection to assemble via ordered pathways. Cell 153, 461-470 (2013).
    • (2013) Cell , vol.153 , pp. 461-470
    • Marsh, J.A.1
  • 41
    • 55849129963 scopus 로고    scopus 로고
    • Halothiobacillus neapolitanus carboxysomes sequester heterologous and chimeric RubisCO species
    • Menon, B. B., Dou, Z., Heinhorst, S., Shively, J. M. & Cannon, G. C. Halothiobacillus neapolitanus carboxysomes sequester heterologous and chimeric RubisCO species. PLoS ONE 3, e3570 (2008).
    • (2008) PLoS ONE , vol.3 , pp. e3570
    • Menon, B.B.1    Dou, Z.2    Heinhorst, S.3    Shively, J.M.4    Cannon, G.C.5
  • 42
    • 77749264485 scopus 로고    scopus 로고
    • Spatially ordered dynamics of the bacterial carbon fixation machinery
    • Savage, D. F., Afonso, B., Chen, A. H. & Silver, P. A. Spatially ordered dynamics of the bacterial carbon fixation machinery. Science 327, 1258-1261 (2010).
    • (2010) Science , vol.327 , pp. 1258-1261
    • Savage, D.F.1    Afonso, B.2    Chen, A.H.3    Silver, P.A.4
  • 43
    • 77953793713 scopus 로고    scopus 로고
    • Functional hybrid Rubisco enzymes with plant small subunits and algal large subunits: Engineered rbcS cDNA for expression in Chlamydomonas
    • Genkov, T., Meyer, M., Griffiths, H. & Spreitzer, R. J. Functional hybrid Rubisco enzymes with plant small subunits and algal large subunits: engineered rbcS cDNA for expression in Chlamydomonas. J. Biol. Chem. 285, 19833-19841 (2010).
    • (2010) J. Biol. Chem. , vol.285 , pp. 19833-19841
    • Genkov, T.1    Meyer, M.2    Griffiths, H.3    Spreitzer, R.J.4
  • 44
    • 84875723302 scopus 로고    scopus 로고
    • Cyanobacterial-based approaches to improving photosynthesis in plants
    • Zarzycki, J., Axen, S. D., Kinney, J. N. & Kerfeld, C. A. Cyanobacterial-based approaches to improving photosynthesis in plants. J. Exp. Bot. 64, 787-798 (2013).
    • (2013) J. Exp. Bot. , vol.64 , pp. 787-798
    • Zarzycki, J.1    Axen, S.D.2    Kinney, J.N.3    Kerfeld, C.A.4
  • 45
    • 20444389072 scopus 로고    scopus 로고
    • CO2 concentrating mechanisms in algae: Mechanisms, environmental modulation, and evolution
    • Giordano, M., Beardall, J. & Raven, J. A. CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Annu. Rev. Plant Biol. 56, 99-131 (2005).
    • (2005) Annu. Rev. Plant Biol. , vol.56 , pp. 99-131
    • Giordano, M.1    Beardall, J.2    Raven, J.A.3
  • 46
    • 70349464621 scopus 로고    scopus 로고
    • An epistatic ratchet constrains the direction of glucocorticoid receptor evolution
    • Bridgham, J. T., Ortlund, E. A. & Thornton, J. W. An epistatic ratchet constrains the direction of glucocorticoid receptor evolution. Nature 461, 515-519 (2009).
    • (2009) Nature , vol.461 , pp. 515-519
    • Bridgham, J.T.1    Ortlund, E.A.2    Thornton, J.W.3
  • 47
    • 84856022796 scopus 로고    scopus 로고
    • Evolution of increased complexity in a molecular machine
    • Finnigan, G. C., Hanson-Smith, V., Stevens, T. H. & Thornton, J. W. Evolution of increased complexity in a molecular machine. Nature 481, 360-364 (2012).
    • (2012) Nature , vol.481 , pp. 360-364
    • Finnigan, G.C.1    Hanson-Smith, V.2    Stevens, T.H.3    Thornton, J.W.4
  • 48
    • 1842789011 scopus 로고    scopus 로고
    • Isotopic order, biogeochemical processes, and earth history
    • Hayes, J. M. Isotopic order, biogeochemical processes, and earth history. Geochim. Cosmochim. Acta 68, 1691-1700 (2004).
    • (2004) Geochim. Cosmochim. Acta , vol.68 , pp. 1691-1700
    • Hayes, J.M.1
  • 49
    • 36249017240 scopus 로고    scopus 로고
    • The age of Rubisco: The evolution of oxygenic photosynthesis
    • Nisbet, E. G. Et al. The age of Rubisco: The evolution of oxygenic photosynthesis. Geobiology 5, 311-335 (2007).
    • (2007) Geobiology , vol.5 , pp. 311-335
    • Nisbet, E.G.1
  • 50
    • 67651049051 scopus 로고    scopus 로고
    • Photorespiratory metabolism: Genes, mutants, energetics, and redox signaling
    • Foyer, C. H., Bloom, A. J., Queval, G. & Noctor, G. Photorespiratory metabolism: genes, mutants, energetics, and redox signaling. Annu. Rev. Plant Biol. 60, 455-484 (2009).
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 455-484
    • Foyer, C.H.1    Bloom, A.J.2    Queval, G.3    Noctor, G.4
  • 51
    • 70450242805 scopus 로고    scopus 로고
    • Exploring protein fitness landscapes by directed evolution
    • Romero, P. A. & Arnold, F. H. Exploring protein fitness landscapes by directed evolution. Nat. Rev. Mol. Cell Biol. 10, 866-876 (2009).
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 866-876
    • Romero, P.A.1    Arnold, F.H.2
  • 52
    • 42449090264 scopus 로고    scopus 로고
    • PROMALS3D: A tool for multiple protein sequence and structure alignments
    • Pei, J., Kim, B.-H. & Grishin, N. V. PROMALS3D: A tool for multiple protein sequence and structure alignments. Nucleic Acids Res. 36, 2295-2300 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2295-2300
    • Pei, J.1    Kim, B.-H.2    Grishin, N.V.3
  • 53
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3. 0
    • Guindon, S. Et al. New algorithms and methods to estimate maximumlikelihood phylogenies: Assessing the performance of PhyML 3. 0. Sys. Biol. 59, 307-321 (2010).
    • (2010) Sys. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1
  • 54
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal, F., Zardoya, R. & Posada, D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 55
    • 33645790071 scopus 로고    scopus 로고
    • Simple and accurate estimation of ancestral protein sequences
    • Hall, B. G. Simple and accurate estimation of ancestral protein sequences. Proc. Natl Acad. Sci. USA 103, 5431-5436 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 5431-5436
    • Hall, B.G.1
  • 56
    • 34250017377 scopus 로고    scopus 로고
    • Structure and function of RbcX, and assembly chaperone for hexadecameric Rubisco
    • Saschenbrecker, S. Et al. Structure and function of RbcX, and assembly chaperone for hexadecameric Rubisco. Cell 129, 1189-1200 (2007).
    • (2007) Cell , vol.129 , pp. 1189-1200
    • Saschenbrecker, S.1
  • 57
    • 35349021532 scopus 로고    scopus 로고
    • Kinetic isotope effect and biochemical characterization of form IA RubisCO from the marine cyanobacterium Prochlorococcus marinus MIT9313
    • Scott, K. Et al. Kinetic isotope effect and biochemical characterization of form IA RubisCO from the marine cyanobacterium Prochlorococcus marinus MIT9313. Limnol. Oceanogr. 52, 2199-2204 (2007).
    • (2007) Limnol. Oceanogr. , vol.52 , pp. 2199-2204
    • Scott, K.1
  • 58
    • 0008547470 scopus 로고
    • Affinity of RuBP carboxylases for carbon dioxide and inhibition of the enzymes by oxygen
    • Bird, I. F., Cornelius, M. J. & Keys, A. J. Affinity of RuBP carboxylases for carbon dioxide and inhibition of the enzymes by oxygen. J. Exp. Bot. 33, 1004-1013 (1982).
    • (1982) J. Exp. Bot. , vol.33 , pp. 1004-1013
    • Bird, I.F.1    Cornelius, M.J.2    Keys, A.J.3
  • 59
    • 0000998334 scopus 로고
    • Ribulose bisphosphate carboxylase/oxygenase content determined with [14C]carboxypentitol bisphosphate in plants and algae
    • Yokota, A. & Canvin, D. T. Ribulose bisphosphate carboxylase/oxygenase content determined with [14C]carboxypentitol bisphosphate in plants and algae. Plant Physiol. 77, 735-739 (1985).
    • (1985) Plant Physiol. , vol.77 , pp. 735-739
    • Yokota, A.1    Canvin, D.T.2
  • 60
    • 0002196234 scopus 로고
    • Variation in the specificity factor of C3 higher plant Rubiscos determined by the total consumption of ribulose-P2
    • Parry, M. A. J., Keys, A. J. & Gutteridge, S. Variation in the specificity factor of C3 higher plant Rubiscos determined by the total consumption of ribulose-P2. J. Exp. Bot. 40, 317-320 (1989).
    • (1989) J. Exp. Bot. , vol.40 , pp. 317-320
    • Parry, M.A.J.1    Keys, A.J.2    Gutteridge, S.3
  • 61
    • 77649305316 scopus 로고    scopus 로고
    • BglBricks: A flexible standard for biological part assembly
    • Anderson, J. C. Et al. BglBricks: A flexible standard for biological part assembly. J. Biol. Eng. 4, 1 (2010).
    • (2010) J. Biol. Eng. , vol.4 , pp. 1
    • Anderson, J.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.