메뉴 건너뛰기




Volumn 481, Issue 7381, 2012, Pages 360-364

Evolution of increased complexity in a molecular machine

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; PROTEIN; PROTON PUMP;

EID: 84856022796     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature10724     Document Type: Article
Times cited : (166)

References (47)
  • 1
    • 35448946098 scopus 로고    scopus 로고
    • Vacuolar ATPases: Rotary proton pumps in physiology and pathophysiology
    • DOI 10.1038/nrm2272, PII NRM2272
    • Forgac, M. Vacuolar ATPases: rotary proton pumps in physiology and pathophysiology. Nature Rev. Mol. Cell Biol. 8, 917-929 (2007). (Pubitemid 47622561)
    • (2007) Nature Reviews Molecular Cell Biology , vol.8 , Issue.11 , pp. 917-929
    • Forgac, M.1
  • 2
    • 33748874852 scopus 로고    scopus 로고
    • From the origin of species to the origin of bacterial flagella
    • DOI 10.1038/nrmicro1493, PII NRMICRO1493
    • Pallen, M. J. & Matzke, N. J. From the origin of species to the origin of bacterial flagella. Nature Rev. Microbiol. 4, 784-790 (2006). (Pubitemid 44420129)
    • (2006) Nature Reviews Microbiology , vol.4 , Issue.10 , pp. 784-790
    • Pallen, M.J.1    Matzke, N.J.2
  • 4
    • 35348829149 scopus 로고    scopus 로고
    • Inventing the dynamo machine: The evolution of the F-type and V-type ATPases
    • DOI 10.1038/nrmicro1767, PII NRMICRO1767
    • Mulkidjanian, A. Y., Makarova, K. S., Galperin, M. Y. & Koonin, E. V. Inventing the dynamo machine: the evolution of the F-type and V-type ATPases. Nature Rev. Microbiol. 5, 892-899 (2007). (Pubitemid 47578390)
    • (2007) Nature Reviews Microbiology , vol.5 , Issue.11 , pp. 892-899
    • Mulkidjanian, A.Y.1    Makarova, K.S.2    Galperin, M.Y.3    Koonin, E.V.4
  • 5
    • 33746575844 scopus 로고    scopus 로고
    • Evolution of the molecular machines for protein import into mitochondria
    • DOI 10.1126/science.1127895
    • Dolezal, P., Likic, V., Tachezy, J. & Lithgow, T. Evolution of the molecular machines for protein import into mitochondria. Science 313, 314-318 (2006). (Pubitemid 44480948)
    • (2006) Science , vol.313 , Issue.5785 , pp. 314-318
    • Dolezal, P.1    Likic, V.2    Tachezy, J.3    Lithgow, T.4
  • 6
    • 70349459932 scopus 로고    scopus 로고
    • The reducible complexity of a mitochondrialmolecularmachine
    • Clements, A. et al.The reducible complexity of a mitochondrialmolecularmachine. Proc. Natl Acad. Sci. USA 106, 15791-15795 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 15791-15795
    • Clements, A.1
  • 7
    • 0033800261 scopus 로고    scopus 로고
    • Origin and evolution of eukaryotic chaperonins: Phylogenetic evidence for ancient duplications in CCT genes
    • Archibald, J. M., Logsdon, J. M. Jr & Doolittle, W. F. Origin and evolution of eukaryotic chaperonins: phylogenetic evidence for ancient duplications in CCT genes. Mol. Biol. Evol. 17, 1456-1466 (2000).
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1456-1466
    • Archibald, J.M.1    Logsdon Jr., J.M.2    Doolittle, W.F.3
  • 8
    • 17444385984 scopus 로고    scopus 로고
    • Tracing the evolution of a large protein complex in the eukaryotes, NADH:ubiquinone oxidoreductase (Complex I)
    • DOI 10.1016/j.jmb.2005.02.067
    • Gabaldó n, T., Rainey, D. & Huynen, M. A. Tracing the evolution of a large protein complex in the eukaryotes, NADH:ubiquinone oxidoreductase (complex I). J. Mol. Biol. 348, 857-870 (2005). (Pubitemid 40544387)
    • (2005) Journal of Molecular Biology , vol.348 , Issue.4 , pp. 857-870
    • Gabaldon, T.1    Rainey, D.2    Huynen, M.A.3
  • 9
    • 1942531303 scopus 로고    scopus 로고
    • Resurrecting ancient genes: Experimental analysis of extinct molecules
    • DOI 10.1038/nrg1324
    • Thornton, J. W. Resurrecting ancient genes: experimental analysis of extinct molecules. Nature Rev. Genet. 5, 366-375 (2004). (Pubitemid 38529408)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.5 , pp. 366-375
    • Thornton, J.W.1
  • 11
    • 77955584075 scopus 로고    scopus 로고
    • Analyzing protein structure and function using ancestral gene reconstruction
    • Harms, M. J. & Thornton, J. W. Analyzing protein structure and function using ancestral gene reconstruction. Curr. Opin. Struct. Biol. 20, 360-366 (2010).
    • (2010) Curr. Opin. Struct. Biol. , vol.20 , pp. 360-366
    • Harms, M.J.1    Thornton, J.W.2
  • 14
    • 77950378868 scopus 로고    scopus 로고
    • Inhibition of host vacuolar H1-ATPase activity by a Legionella pneumophila effector
    • Xu, L. et al. Inhibition of host vacuolar H1-ATPase activity by a Legionella pneumophila effector. PLoS Pathog. 6, e1000822 (2010).
    • (2010) PLoS Pathog. , vol.6
    • Xu, L.1
  • 17
    • 0034604676 scopus 로고    scopus 로고
    • +-ATPase proton pore
    • DOI 10.1074/jbc.M004440200
    • Powell, B., Graham, L. A. & Stevens, T. H. Molecular characterization of the yeast vacuolar H1-ATPase proton pore. J. Biol. Chem. 275, 23654-23660 (2000). (Pubitemid 30627454)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.31 , pp. 23654-23660
    • Powell, B.1    Graham, L.A.2    Stevens, T.H.3
  • 18
    • 0025014022 scopus 로고
    • Roles of the VMA3 gene product, subunit c of the vacuolar membrane H1-ATPase on vacuolar acidification and protein transport. A study with VMA3-disrupted mutants of Saccharomyces cerevisiae
    • Umemoto, N., Yoshihisa, T., Hirata, R.& Anraku, Y. Roles of the VMA3 gene product, subunit c of the vacuolar membrane H1-ATPase on vacuolar acidification and protein transport. A study with VMA3-disrupted mutants of Saccharomyces cerevisiae. J. Biol. Chem. 265, 18447-18453 (1990).
    • (1990) J. Biol. Chem. , vol.265 , pp. 18447-18453
    • Umemoto, N.1    Yoshihisa, T.2    Hirata, R.3    Anraku, Y.4
  • 19
    • 0026338410 scopus 로고
    • +-ATPase activity
    • Umemoto, N., Ohya, Y. & Anraku, Y. VMA11, a novel gene that encodes a putative proteolipid, is indispensable for expression of yeast vacuolar membrane H1-ATPase activity. J. Biol. Chem. 266, 24526-24532 (1991). (Pubitemid 21908973)
    • (1991) Journal of Biological Chemistry , vol.266 , Issue.36 , pp. 24526-24532
    • Umemoto, N.1    Ohya, Y.2    Anraku, Y.3
  • 20
    • 34247601439 scopus 로고    scopus 로고
    • Dating divergences in the Fungal Tree of Life: Review and new analyses
    • Taylor, J. W.& Berbee, M. L. Dating divergences in the fungal tree of life: review and new analyses. Mycologia 98, 838-849 (2006). (Pubitemid 46683208)
    • (2006) Mycologia , vol.98 , Issue.6 , pp. 838-849
    • Taylor, J.W.1    Berbee, M.L.2
  • 21
    • 0028820333 scopus 로고
    • A newmethod of inference of ancestral nucleotide and amino acid sequences
    • Yang, Z., Kumar, S.&Nei, M.A newmethod of inference of ancestral nucleotide and amino acid sequences. Genetics 141, 1641-1650 (1995).
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 22
    • 33645119556 scopus 로고    scopus 로고
    • The where, when, and how of organelle acidification by the yeast vacuolar H1-ATPase
    • Kane, P. M. The where, when, and how of organelle acidification by the yeast vacuolar H1-ATPase. Microbiol. Mol. Biol. Rev. 70, 177-191 (2006).
    • (2006) Microbiol. Mol. Biol. Rev. , vol.70 , pp. 177-191
    • Kane, P.M.1
  • 24
    • 36349017907 scopus 로고    scopus 로고
    • Arrangement of subunits in the proteolipid ring of the V-ATPase
    • DOI 10.1074/jbc.M704331200
    • Wang, Y., Cipriano, D. J. & Forgac, M. Arrangement of subunits in the proteolipid ring of the V-ATPase. J. Biol. Chem. 282, 34058-34065 (2007). (Pubitemid 350159463)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.47 , pp. 34058-34065
    • Wang, Y.1    Cipriano, D.J.2    Forgac, M.3
  • 26
    • 0017771466 scopus 로고
    • Evolution and tinkering
    • Jacob, F. Evolution and tinkering. Science 196, 1161-1166 (1977).
    • (1977) Science , vol.196 , pp. 1161-1166
    • Jacob, F.1
  • 30
    • 34848913963 scopus 로고    scopus 로고
    • Evolution of protein complexes by duplication of homomeric interactions
    • Pereira-Leal, J. B., Levy, E. D., Kamp, C. & Teichmann, S. A. Evolution of protein complexes by duplication of homomeric interactions. Genome Biol. 8, R51 (2007).
    • (2007) Genome Biol. , vol.8
    • Pereira-Leal, J.B.1    Levy, E.D.2    Kamp, C.3    Teichmann, S.A.4
  • 31
    • 59449088040 scopus 로고    scopus 로고
    • Voa1p functions in V-ATPase assembly in the yeast endoplasmic reticulum
    • Ryan, M., Graham, L. A. & Stevens, T. H. Voa1p functions in V-ATPase assembly in the yeast endoplasmic reticulum. Mol. Biol. Cell 19, 5131-5142 (2008).
    • (2008) Mol. Biol. Cell , vol.19 , pp. 5131-5142
    • Ryan, M.1    Graham, L.A.2    Stevens, T.H.3
  • 33
    • 46249095233 scopus 로고    scopus 로고
    • Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
    • DOI 10.1126/science.1158395
    • Lö ytynoja, A. & Goldman, N. Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320, 1632-1635 (2008). (Pubitemid 351931252)
    • (2008) Science , vol.320 , Issue.5883 , pp. 1632-1635
    • Loytynoja, A.1    Goldman, N.2
  • 34
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan, S. & Goldman, N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18, 691-699 (2001). (Pubitemid 32372940)
    • (2001) Molecular Biology and Evolution , vol.18 , Issue.5 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 35
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • DOI 10.1093/bioinformatics/bti263
    • Abascal, F., Zardoya, R.&Posada, D. Prottest: selection of best-fitmodels of protein evolution. Bioinformatics 21, 2104-2105 (2005). (Pubitemid 40668057)
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 36
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003). (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 37
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • DOI 10.1080/10635150600755453, PII T8083888667361
    • Anisimova, M. & Gascuel, O. Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst. Biol. 55, 539-552 (2006). (Pubitemid 43922340)
    • (2006) Systematic Biology , vol.55 , Issue.4 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 39
    • 34547803197 scopus 로고    scopus 로고
    • PAML4: Phylogenetic analysis by maximumlikelihood
    • Yang, Z. PAML4: Phylogenetic analysis by maximumlikelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 40
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20, 406-416 (1971).
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 41
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G.&Gibson, T. J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (1994). (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 42
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • DOI 10.1093/nar/gkh340
    • Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004). (Pubitemid 38832724)
    • (2004) Nucleic Acids Research , vol.32 , Issue.5 , pp. 1792-1797
    • Edgar, R.C.1
  • 43
    • 14644430471 scopus 로고    scopus 로고
    • ProbCons: Probabilistic consistency-based multiple sequence alignment
    • DOI 10.1101/gr.2821705
    • Do, C. B., Mahabhashyam, M. S., Brudno, M. & Batzoglou, S. ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res. 15, 330-340 (2005). (Pubitemid 40309398)
    • (2005) Genome Research , vol.15 , Issue.2 , pp. 330-340
    • Do, C.B.1    Mahabhashyam, M.S.P.2    Brudno, M.3    Batzoglou, S.4
  • 44
    • 67749108209 scopus 로고    scopus 로고
    • Indelible: A flexible simulator of biological sequence evolution
    • Fletcher, W. & Yang, Z. Indelible: a flexible simulator of biological sequence evolution. Mol. Biol. Evol. 26, 1879-1888 (2009).
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 1879-1888
    • Fletcher, W.1    Yang, Z.2
  • 46
    • 0032873415 scopus 로고    scopus 로고
    • Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
    • DOI 10.1002/(SICI)1097-0061(199910)15:14<1541::AID-YEA476>3.0.CO;2- K
    • Goldstein, A. L.&McCuster, J. H. Three newdominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15, 1541-1553 (1999). (Pubitemid 29472165)
    • (1999) Yeast , vol.15 , Issue.14 , pp. 1541-1553
    • Goldstein, A.L.1    McCusker, J.H.2
  • 47
    • 3843146246 scopus 로고    scopus 로고
    • An efficient one-step site-directed and site-saturation mutagenesis protocol
    • Zheng, L., Baumann, U. & Reymond, J. L. An efficient one-step site-directed and site-saturation mutagenesis protocol. Nucleic Acids Res. 32, e115 (2004).
    • (2004) Nucleic Acids Res. , vol.32
    • Zheng, L.1    Baumann, U.2    Reymond, J.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.