-
1
-
-
35448946098
-
Vacuolar ATPases: Rotary proton pumps in physiology and pathophysiology
-
DOI 10.1038/nrm2272, PII NRM2272
-
Forgac, M. Vacuolar ATPases: rotary proton pumps in physiology and pathophysiology. Nature Rev. Mol. Cell Biol. 8, 917-929 (2007). (Pubitemid 47622561)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.11
, pp. 917-929
-
-
Forgac, M.1
-
2
-
-
33748874852
-
From the origin of species to the origin of bacterial flagella
-
DOI 10.1038/nrmicro1493, PII NRMICRO1493
-
Pallen, M. J. & Matzke, N. J. From the origin of species to the origin of bacterial flagella. Nature Rev. Microbiol. 4, 784-790 (2006). (Pubitemid 44420129)
-
(2006)
Nature Reviews Microbiology
, vol.4
, Issue.10
, pp. 784-790
-
-
Pallen, M.J.1
Matzke, N.J.2
-
4
-
-
35348829149
-
Inventing the dynamo machine: The evolution of the F-type and V-type ATPases
-
DOI 10.1038/nrmicro1767, PII NRMICRO1767
-
Mulkidjanian, A. Y., Makarova, K. S., Galperin, M. Y. & Koonin, E. V. Inventing the dynamo machine: the evolution of the F-type and V-type ATPases. Nature Rev. Microbiol. 5, 892-899 (2007). (Pubitemid 47578390)
-
(2007)
Nature Reviews Microbiology
, vol.5
, Issue.11
, pp. 892-899
-
-
Mulkidjanian, A.Y.1
Makarova, K.S.2
Galperin, M.Y.3
Koonin, E.V.4
-
5
-
-
33746575844
-
Evolution of the molecular machines for protein import into mitochondria
-
DOI 10.1126/science.1127895
-
Dolezal, P., Likic, V., Tachezy, J. & Lithgow, T. Evolution of the molecular machines for protein import into mitochondria. Science 313, 314-318 (2006). (Pubitemid 44480948)
-
(2006)
Science
, vol.313
, Issue.5785
, pp. 314-318
-
-
Dolezal, P.1
Likic, V.2
Tachezy, J.3
Lithgow, T.4
-
6
-
-
70349459932
-
The reducible complexity of a mitochondrialmolecularmachine
-
Clements, A. et al.The reducible complexity of a mitochondrialmolecularmachine. Proc. Natl Acad. Sci. USA 106, 15791-15795 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 15791-15795
-
-
Clements, A.1
-
7
-
-
0033800261
-
Origin and evolution of eukaryotic chaperonins: Phylogenetic evidence for ancient duplications in CCT genes
-
Archibald, J. M., Logsdon, J. M. Jr & Doolittle, W. F. Origin and evolution of eukaryotic chaperonins: phylogenetic evidence for ancient duplications in CCT genes. Mol. Biol. Evol. 17, 1456-1466 (2000).
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1456-1466
-
-
Archibald, J.M.1
Logsdon Jr., J.M.2
Doolittle, W.F.3
-
8
-
-
17444385984
-
Tracing the evolution of a large protein complex in the eukaryotes, NADH:ubiquinone oxidoreductase (Complex I)
-
DOI 10.1016/j.jmb.2005.02.067
-
Gabaldó n, T., Rainey, D. & Huynen, M. A. Tracing the evolution of a large protein complex in the eukaryotes, NADH:ubiquinone oxidoreductase (complex I). J. Mol. Biol. 348, 857-870 (2005). (Pubitemid 40544387)
-
(2005)
Journal of Molecular Biology
, vol.348
, Issue.4
, pp. 857-870
-
-
Gabaldon, T.1
Rainey, D.2
Huynen, M.A.3
-
9
-
-
1942531303
-
Resurrecting ancient genes: Experimental analysis of extinct molecules
-
DOI 10.1038/nrg1324
-
Thornton, J. W. Resurrecting ancient genes: experimental analysis of extinct molecules. Nature Rev. Genet. 5, 366-375 (2004). (Pubitemid 38529408)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.5
, pp. 366-375
-
-
Thornton, J.W.1
-
11
-
-
77955584075
-
Analyzing protein structure and function using ancestral gene reconstruction
-
Harms, M. J. & Thornton, J. W. Analyzing protein structure and function using ancestral gene reconstruction. Curr. Opin. Struct. Biol. 20, 360-366 (2010).
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 360-366
-
-
Harms, M.J.1
Thornton, J.W.2
-
12
-
-
0033946477
-
Defects in TCIRG1 subunit of the vacuolar proton pump are responsible for a subset of human autosomal recessive osteopetrosis
-
DOI 10.1038/77131
-
Frattini, A. et al. Defects in TCIRG1 subunit of the vacuolar proton pump are responsible for a subset of human autosomal recessive osteopetrosis. Nature Genet. 25, 343-346 (2000). (Pubitemid 30437326)
-
(2000)
Nature Genetics
, vol.25
, Issue.3
, pp. 343-346
-
-
Frattini, A.1
Orchard, P.J.2
Sobacchi, C.3
Giliani, S.4
Abinun, M.5
Mattsson, J.P.6
Keeling, D.J.7
Andersson, A.-K.8
Wallbrandt, P.9
Zecca, L.10
Notarangelo, L.D.11
Vezzoni, P.12
Villa, A.13
-
13
-
-
70450284314
-
V-ATPase inhibitors and implication in cancer treatment
-
Pérez-Sayáns, M., Somoza-Martìn, J. M., Barros-Angueira, F., Rey, J. M. & Garcìa-Garcìa, A. V-ATPase inhibitors and implication in cancer treatment. Cancer Treat. Rev. 35, 707-713 (2009).
-
(2009)
Cancer Treat. Rev.
, vol.35
, pp. 707-713
-
-
Pérez-Sayáns, M.1
Somoza-Martìn, J.M.2
Barros-Angueira, F.3
Rey, J.M.4
Garcìa-Garcìa, A.5
-
14
-
-
77950378868
-
Inhibition of host vacuolar H1-ATPase activity by a Legionella pneumophila effector
-
Xu, L. et al. Inhibition of host vacuolar H1-ATPase activity by a Legionella pneumophila effector. PLoS Pathog. 6, e1000822 (2010).
-
(2010)
PLoS Pathog.
, vol.6
-
-
Xu, L.1
-
15
-
-
0038606551
-
Subunit rotation of vacuolar-type proton pumping ATPase. Relative rotation of the G and c subunits
-
DOI 10.1074/jbc.M302756200
-
Hirata, T. et al. Subunit rotation of vacuolar-type proton pumping ATPase: relative rotation of the g and c subunits. J. Biol. Chem. 278, 23714-23719 (2003). (Pubitemid 36830195)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.26
, pp. 23714-23719
-
-
Hirata, T.1
Iwamoto-Kihara, A.2
Sun-Wada, G.-H.3
Okajima, T.4
Wada, Y.5
Futai, M.6
-
16
-
-
29144454923
-
1-motor
-
DOI 10.1073/pnas.0507764102
-
Imamura, H. et al. Rotation scheme of V1-motor is different from that of F1-motor. Proc. Natl Acad. Sci. USA 102, 17929-17933 (2005). (Pubitemid 41798479)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.50
, pp. 17929-17933
-
-
Imamura, H.1
Takeda, M.2
Funamoto, S.3
Shimabukuro, K.4
Yoshida, M.5
Yokoyama, K.6
-
17
-
-
0034604676
-
+-ATPase proton pore
-
DOI 10.1074/jbc.M004440200
-
Powell, B., Graham, L. A. & Stevens, T. H. Molecular characterization of the yeast vacuolar H1-ATPase proton pore. J. Biol. Chem. 275, 23654-23660 (2000). (Pubitemid 30627454)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.31
, pp. 23654-23660
-
-
Powell, B.1
Graham, L.A.2
Stevens, T.H.3
-
18
-
-
0025014022
-
Roles of the VMA3 gene product, subunit c of the vacuolar membrane H1-ATPase on vacuolar acidification and protein transport. A study with VMA3-disrupted mutants of Saccharomyces cerevisiae
-
Umemoto, N., Yoshihisa, T., Hirata, R.& Anraku, Y. Roles of the VMA3 gene product, subunit c of the vacuolar membrane H1-ATPase on vacuolar acidification and protein transport. A study with VMA3-disrupted mutants of Saccharomyces cerevisiae. J. Biol. Chem. 265, 18447-18453 (1990).
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 18447-18453
-
-
Umemoto, N.1
Yoshihisa, T.2
Hirata, R.3
Anraku, Y.4
-
19
-
-
0026338410
-
+-ATPase activity
-
Umemoto, N., Ohya, Y. & Anraku, Y. VMA11, a novel gene that encodes a putative proteolipid, is indispensable for expression of yeast vacuolar membrane H1-ATPase activity. J. Biol. Chem. 266, 24526-24532 (1991). (Pubitemid 21908973)
-
(1991)
Journal of Biological Chemistry
, vol.266
, Issue.36
, pp. 24526-24532
-
-
Umemoto, N.1
Ohya, Y.2
Anraku, Y.3
-
20
-
-
34247601439
-
Dating divergences in the Fungal Tree of Life: Review and new analyses
-
Taylor, J. W.& Berbee, M. L. Dating divergences in the fungal tree of life: review and new analyses. Mycologia 98, 838-849 (2006). (Pubitemid 46683208)
-
(2006)
Mycologia
, vol.98
, Issue.6
, pp. 838-849
-
-
Taylor, J.W.1
Berbee, M.L.2
-
21
-
-
0028820333
-
A newmethod of inference of ancestral nucleotide and amino acid sequences
-
Yang, Z., Kumar, S.&Nei, M.A newmethod of inference of ancestral nucleotide and amino acid sequences. Genetics 141, 1641-1650 (1995).
-
(1995)
Genetics
, vol.141
, pp. 1641-1650
-
-
Yang, Z.1
Kumar, S.2
Nei, M.3
-
22
-
-
33645119556
-
The where, when, and how of organelle acidification by the yeast vacuolar H1-ATPase
-
Kane, P. M. The where, when, and how of organelle acidification by the yeast vacuolar H1-ATPase. Microbiol. Mol. Biol. Rev. 70, 177-191 (2006).
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 177-191
-
-
Kane, P.M.1
-
23
-
-
0031040410
-
+-ATPase
-
DOI 10.1074/jbc.272.8.4795
-
Hirata, R., Graham, L. A., Takatsuki, A., Stevens, T. H. & Anraku, Y. Vma11 and vma16 encode second and third proteolipid subunits of the Saccharomyces cerevisiae vacuolar membrane H1-ATPase. J. Biol. Chem. 272, 4795-4803 (1997). (Pubitemid 27090025)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.8
, pp. 4795-4803
-
-
Hirata, R.1
Graham, L.A.2
Takatsuki, A.3
Stevens, T.H.4
Anraku, Y.5
-
24
-
-
36349017907
-
Arrangement of subunits in the proteolipid ring of the V-ATPase
-
DOI 10.1074/jbc.M704331200
-
Wang, Y., Cipriano, D. J. & Forgac, M. Arrangement of subunits in the proteolipid ring of the V-ATPase. J. Biol. Chem. 282, 34058-34065 (2007). (Pubitemid 350159463)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.47
, pp. 34058-34065
-
-
Wang, Y.1
Cipriano, D.J.2
Forgac, M.3
-
26
-
-
0017771466
-
Evolution and tinkering
-
Jacob, F. Evolution and tinkering. Science 196, 1161-1166 (1977).
-
(1977)
Science
, vol.196
, pp. 1161-1166
-
-
Jacob, F.1
-
28
-
-
79956357160
-
Experimental illumination of a fitness landscape
-
Hietpas, R. T., Jensen, J. D. & Bolon, D. N. Experimental illumination of a fitness landscape. Proc. Natl Acad. Sci. USA 108, 7896-7901 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 7896-7901
-
-
Hietpas, R.T.1
Jensen, J.D.2
Bolon, D.N.3
-
29
-
-
10744230485
-
Global mapping of the yeast genetic interaction network
-
DOI 10.1126/science.1091317
-
Tong, A. H. Y. et al. Globalmapping of the yeast genetic interaction network. Science 303, 808-813 (2004). (Pubitemid 38174652)
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 808-813
-
-
Tong, A.H.Y.1
Lesage, G.2
Bader, G.D.3
Ding, H.4
Xu, H.5
Xin, X.6
Young, J.7
Berriz, G.F.8
Brost, R.L.9
Chang, M.10
Chen, Y.11
Cheng, X.12
Chua, G.13
Friesen, H.14
Goldberg, D.S.15
Haynes, J.16
Humphries, C.17
He, G.18
Hussein, S.19
Ke, L.20
Krogan, N.21
Li, Z.22
Levinson, J.N.23
Lu, H.24
Menard, P.25
Munyana, C.26
Parsons, A.B.27
Ryan, O.28
Tonikian, R.29
Roberts, T.30
Sdicu, A.-M.31
Shapiro, J.32
Sheikh, B.33
Suter, B.34
Wong, S.L.35
Zhang, L.V.36
Zhu, H.37
Burd, C.G.38
Munro, S.39
Sander, C.40
Rine, J.41
Greenblatt, J.42
Peter, M.43
Bretscher, A.44
Bell, G.45
Roth, F.P.46
Brown, G.W.47
Andrews, B.48
Bussey, H.49
Boone, C.50
more..
-
30
-
-
34848913963
-
Evolution of protein complexes by duplication of homomeric interactions
-
Pereira-Leal, J. B., Levy, E. D., Kamp, C. & Teichmann, S. A. Evolution of protein complexes by duplication of homomeric interactions. Genome Biol. 8, R51 (2007).
-
(2007)
Genome Biol.
, vol.8
-
-
Pereira-Leal, J.B.1
Levy, E.D.2
Kamp, C.3
Teichmann, S.A.4
-
31
-
-
59449088040
-
Voa1p functions in V-ATPase assembly in the yeast endoplasmic reticulum
-
Ryan, M., Graham, L. A. & Stevens, T. H. Voa1p functions in V-ATPase assembly in the yeast endoplasmic reticulum. Mol. Biol. Cell 19, 5131-5142 (2008).
-
(2008)
Mol. Biol. Cell
, vol.19
, pp. 5131-5142
-
-
Ryan, M.1
Graham, L.A.2
Stevens, T.H.3
-
33
-
-
46249095233
-
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
-
DOI 10.1126/science.1158395
-
Lö ytynoja, A. & Goldman, N. Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320, 1632-1635 (2008). (Pubitemid 351931252)
-
(2008)
Science
, vol.320
, Issue.5883
, pp. 1632-1635
-
-
Loytynoja, A.1
Goldman, N.2
-
34
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan, S. & Goldman, N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18, 691-699 (2001). (Pubitemid 32372940)
-
(2001)
Molecular Biology and Evolution
, vol.18
, Issue.5
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
-
35
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
DOI 10.1093/bioinformatics/bti263
-
Abascal, F., Zardoya, R.&Posada, D. Prottest: selection of best-fitmodels of protein evolution. Bioinformatics 21, 2104-2105 (2005). (Pubitemid 40668057)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
36
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
DOI 10.1080/10635150390235520
-
Guindon, S. & Gascuel, O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003). (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
37
-
-
33745256005
-
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
-
DOI 10.1080/10635150600755453, PII T8083888667361
-
Anisimova, M. & Gascuel, O. Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst. Biol. 55, 539-552 (2006). (Pubitemid 43922340)
-
(2006)
Systematic Biology
, vol.55
, Issue.4
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
38
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
DOI 10.1038/387489a0
-
Aguinaldo, A. M. A. et al. Evidence for a clade of nematodes, arthropods, and other moulting animals. Nature 387, 489-493 (1997). (Pubitemid 27235464)
-
(1997)
Nature
, vol.387
, Issue.6632
, pp. 489-493
-
-
Aguinaldo, A.M.A.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
Raff, R.A.6
Lake, J.A.7
-
39
-
-
34547803197
-
PAML4: Phylogenetic analysis by maximumlikelihood
-
Yang, Z. PAML4: Phylogenetic analysis by maximumlikelihood. Mol. Biol. Evol. 24, 1586-1591 (2007).
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
40
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W. M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20, 406-416 (1971).
-
(1971)
Syst. Zool.
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
41
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G.&Gibson, T. J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (1994). (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
42
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
DOI 10.1093/nar/gkh340
-
Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792-1797 (2004). (Pubitemid 38832724)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
43
-
-
14644430471
-
ProbCons: Probabilistic consistency-based multiple sequence alignment
-
DOI 10.1101/gr.2821705
-
Do, C. B., Mahabhashyam, M. S., Brudno, M. & Batzoglou, S. ProbCons: Probabilistic consistency-based multiple sequence alignment. Genome Res. 15, 330-340 (2005). (Pubitemid 40309398)
-
(2005)
Genome Research
, vol.15
, Issue.2
, pp. 330-340
-
-
Do, C.B.1
Mahabhashyam, M.S.P.2
Brudno, M.3
Batzoglou, S.4
-
44
-
-
67749108209
-
Indelible: A flexible simulator of biological sequence evolution
-
Fletcher, W. & Yang, Z. Indelible: a flexible simulator of biological sequence evolution. Mol. Biol. Evol. 26, 1879-1888 (2009).
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 1879-1888
-
-
Fletcher, W.1
Yang, Z.2
-
46
-
-
0032873415
-
Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
-
DOI 10.1002/(SICI)1097-0061(199910)15:14<1541::AID-YEA476>3.0.CO;2- K
-
Goldstein, A. L.&McCuster, J. H. Three newdominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast 15, 1541-1553 (1999). (Pubitemid 29472165)
-
(1999)
Yeast
, vol.15
, Issue.14
, pp. 1541-1553
-
-
Goldstein, A.L.1
McCusker, J.H.2
-
47
-
-
3843146246
-
An efficient one-step site-directed and site-saturation mutagenesis protocol
-
Zheng, L., Baumann, U. & Reymond, J. L. An efficient one-step site-directed and site-saturation mutagenesis protocol. Nucleic Acids Res. 32, e115 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Zheng, L.1
Baumann, U.2
Reymond, J.L.3
|