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Volumn 6, Issue , 2016, Pages

An innovative platform for quick and flexible joining of assorted DNA fragments

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RESTRICTION ENDONUCLEASE;

EID: 84955254735     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep19278     Document Type: Article
Times cited : (19)

References (41)
  • 1
    • 33745454125 scopus 로고    scopus 로고
    • Synthetic biology: New engineering rules for an emerging discipline
    • 0028
    • Andrianantoandro, E., Basu, S., Karig, D. K. & Weiss, R. Synthetic biology: new engineering rules for an emerging discipline. Mol Syst Biol 2, 2006 0028 (2006)
    • (2006) Mol Syst Biol , vol.2
    • Andrianantoandro, E.1    Basu, S.2    Karig, D.K.3    Weiss, R.4
  • 2
    • 79959991126 scopus 로고    scopus 로고
    • Building enhancers from the ground up: A synthetic biology approach
    • Amit, R., Garcia, H. G., Phillips, R. & Fraser, S. E. Building enhancers from the ground up: a synthetic biology approach. Cell 146, 105-118 (2011)
    • (2011) Cell , vol.146 , pp. 105-118
    • Amit, R.1    Garcia, H.G.2    Phillips, R.3    Fraser, S.E.4
  • 3
    • 84873800970 scopus 로고    scopus 로고
    • Genome-scale engineering for systems and synthetic biology
    • Esvelt, K. M. & Wang, H. H. Genome-scale engineering for systems and synthetic biology. Mol Syst Biol 9, 641 (2013)
    • (2013) Mol Syst Biol , vol.9 , pp. 641
    • Esvelt, K.M.1    Wang, H.H.2
  • 4
    • 84899698094 scopus 로고    scopus 로고
    • Programming biological operating systems: Genome design, assembly and activation
    • Gibson, D. G. Programming biological operating systems: genome design, assembly and activation. Nat Methods 11, 521-526 (2014)
    • (2014) Nat Methods , vol.11 , pp. 521-526
    • Gibson, D.G.1
  • 5
    • 84876379604 scopus 로고    scopus 로고
    • Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast
    • McIsaac, R. S. et al. Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast. Nucleic Acids Res 41, e57 (2013)
    • (2013) Nucleic Acids Res , vol.41 , pp. e57
    • McIsaac, R.S.1
  • 6
    • 84869078490 scopus 로고    scopus 로고
    • Iterative plug-and-play methodology for constructing and modifying synthetic gene networks
    • Litcofsky, K. D., Afeyan, R. B., Krom, R. J., Khalil, A. S. & Collins, J. J. Iterative plug-and-play methodology for constructing and modifying synthetic gene networks. Nat Methods 9, 1077-1080 (2012)
    • (2012) Nat Methods , vol.9 , pp. 1077-1080
    • Litcofsky, K.D.1    Afeyan, R.B.2    Krom, R.J.3    Khalil, A.S.4    Collins, J.J.5
  • 7
    • 84901846633 scopus 로고    scopus 로고
    • Interactive assembly algorithms for molecular cloning
    • Appleton, E., Tao, J., Haddock, T. & Densmore, D. Interactive assembly algorithms for molecular cloning. Nat Methods 11, 657-662 (2014)
    • (2014) Nat Methods , vol.11 , pp. 657-662
    • Appleton, E.1    Tao, J.2    Haddock, T.3    Densmore, D.4
  • 8
    • 84907765477 scopus 로고    scopus 로고
    • A unified design space of synthetic stripe-forming networks
    • Schaerli, Y. et al. A unified design space of synthetic stripe-forming networks. Nat Commun 5, 4905 (2014)
    • (2014) Nat Commun , vol.5 , pp. 4905
    • Schaerli, Y.1
  • 11
    • 84864258391 scopus 로고    scopus 로고
    • Synthetic biology: An emerging engineering discipline
    • Cheng, A. A. & Lu, T. K. Synthetic biology: an emerging engineering discipline. Annu Rev Biomed Eng 14, 155-178 (2012)
    • (2012) Annu Rev Biomed Eng , vol.14 , pp. 155-178
    • Cheng, A.A.1    Lu, T.K.2
  • 12
    • 67349270900 scopus 로고    scopus 로고
    • Enzymatic assembly of DNA molecules up to several hundred kilobases
    • Gibson, D. G. et al. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6, 343-345 (2009)
    • (2009) Nat Methods , vol.6 , pp. 343-345
    • Gibson, D.G.1
  • 13
    • 0034614678 scopus 로고    scopus 로고
    • Protein interaction mapping in C. Elegans using proteins involved in vulval development
    • Walhout, A. J. et al. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 287, 116-122 (2000)
    • (2000) Science , vol.287 , pp. 116-122
    • Walhout, A.J.1
  • 15
    • 56649114274 scopus 로고    scopus 로고
    • A one pot, one step, precision cloning method with high throughput capability
    • Engler, C., Kandzia, R. & Marillonnet, S. A one pot, one step, precision cloning method with high throughput capability. PLoS One 3, e3647 (2008)
    • (2008) PLoS One , vol.3 , pp. e3647
    • Engler, C.1    Kandzia, R.2    Marillonnet, S.3
  • 16
    • 84911981261 scopus 로고    scopus 로고
    • Synthetic biology as it relates to CAM photosyn thesis: Challenges and opportunities
    • DePaoli, H. C., Borland, A. M., Tuskan, G. A., Cushman, J. C. & Yang, X. Synthetic biology as it relates to CAM photosynthesis: challenges and opportunities. J Exp Bot 65, 3381-3393 (2014)
    • (2014) J Exp Bot , vol.65 , pp. 3381-3393
    • DePaoli, H.C.1    Borland, A.M.2    Tuskan, G.A.3    Cushman, J.C.4    Yang, X.5
  • 17
    • 84886824017 scopus 로고    scopus 로고
    • Rapid modular and reliable construction of complex mammalian gene circuits
    • Guye, P., Li, Y., Wroblewska, L., Duportet, X. & Weiss, R. Rapid, modular and reliable construction of complex mammalian gene circuits. Nucleic Acids Res 41, e156 (2013)
    • (2013) Nucleic Acids Res , vol.41 , pp. e156
    • Guye, P.1    Li, Y.2    Wroblewska, L.3    Duportet, X.4    Weiss, R.5
  • 18
    • 84879720559 scopus 로고    scopus 로고
    • GoldenBraid 2. 0: A comprehensive DNA assembly framework for plant synthetic biology
    • Sarrion-Perdigones, A. et al. GoldenBraid 2. 0: a comprehensive DNA assembly framework for plant synthetic biology. Plant Physiol 162, 1618-1631 (2013)
    • (2013) Plant Physiol , vol.162 , pp. 1618-1631
    • Sarrion-Perdigones, A.1
  • 19
    • 84939807175 scopus 로고    scopus 로고
    • Standards for plant synthetic biology: A common syntax for exchange of DNA parts
    • Patron, N. J. et al. Standards for plant synthetic biology: a common syntax for exchange of DNA parts. New Phytol 208, 13-19 (2015)
    • (2015) New Phytol , vol.208 , pp. 13-19
    • Patron, N.J.1
  • 21
    • 84946059381 scopus 로고    scopus 로고
    • REBASE-A database for DNA restriction and modification: Enzymes, genes and genomes
    • Roberts, R. J., Vincze, T., Posfai, J. & Macelis, D. REBASE-a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res 43, D298-299 (2015)
    • (2015) Nucleic Acids Res , vol.43 , pp. D298-299
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 22
    • 84885203239 scopus 로고    scopus 로고
    • Arabidopsis tetraspanins are confined to discrete expression domains and cell types in reproductive tissues and form homo- and heterodimers when expressed in yeast
    • Boavida, L. C., Qin, P., Broz, M., Becker, J. D. & McCormick, S. Arabidopsis tetraspanins are confined to discrete expression domains and cell types in reproductive tissues and form homo- and heterodimers when expressed in yeast. Plant Physiol 163, 696-712 (2013)
    • (2013) Plant Physiol , vol.163 , pp. 696-712
    • Boavida, L.C.1    Qin, P.2    Broz, M.3    Becker, J.D.4    McCormick, S.5
  • 23
    • 79551627677 scopus 로고    scopus 로고
    • Nucleocytoplasmic distribution is required for activation of resistance by the potato NB-LRR receptor Rx1 and is balanced by its functional domains
    • Slootweg, E. et al. Nucleocytoplasmic distribution is required for activation of resistance by the potato NB-LRR receptor Rx1 and is balanced by its functional domains. Plant Cell 22, 4195-4215 (2010)
    • (2010) Plant Cell , vol.22 , pp. 4195-4215
    • Slootweg, E.1
  • 24
    • 0035015174 scopus 로고    scopus 로고
    • Analysis of the aphthovirus 2A/2B polyprotein cleavage mechanism indicates not a proteolytic reaction, but a novel translational effect: A putative ribosomal skip
    • Donnelly, M. L. et al. Analysis of the aphthovirus 2A/2B polyprotein cleavage mechanism indicates not a proteolytic reaction, but a novel translational effect: a putative ribosomal skip. J Gen Virol 82, 1013-1025 (2001)
    • (2001) J Gen Virol , vol.82 , pp. 1013-1025
    • Donnelly, M.L.1
  • 25
    • 0036010657 scopus 로고    scopus 로고
    • Transgenic expression in Arabidopsis of a polyprotein construct leading to production of two different antimicrobial proteins
    • Francois, I. E. et al. Transgenic expression in Arabidopsis of a polyprotein construct leading to production of two different antimicrobial proteins. Plant Physiol 128, 1346-1358 (2002)
    • (2002) Plant Physiol , vol.128 , pp. 1346-1358
    • Francois, I.E.1
  • 26
    • 77749292855 scopus 로고    scopus 로고
    • In planta transient expression as a system for genetic and biochemical analyses of chlorophyll biosynthesis
    • Sawers, R. J., Farmer, P. R., Moffett, P. & Brutnell, T. P. In planta transient expression as a system for genetic and biochemical analyses of chlorophyll biosynthesis. Plant Methods 2, 15 (2006)
    • (2006) Plant Methods , vol.2 , pp. 15
    • Sawers, R.J.1    Farmer, P.R.2    Moffett, P.3    Brutnell, T.P.4
  • 27
    • 0032750623 scopus 로고    scopus 로고
    • Triple helix formation and the antigene strategy for sequence-specific control of gene expression
    • Praseuth, D., Guieysse, A. L. & Helene, C. Triple helix formation and the antigene strategy for sequence-specific control of gene expression. Biochim Biophys Acta 1489, 181-206 (1999)
    • (1999) Biochim Biophys Acta , vol.1489 , pp. 181-206
    • Praseuth, D.1    Guieysse, A.L.2    Helene, C.3
  • 28
    • 84877311638 scopus 로고    scopus 로고
    • Characterizing the protonation state of cytosine in transient G. C Hoogsteen base pairs in duplex DNA
    • Nikolova, E. N., Goh, G. B., Brooks, C. L., 3rd & Al-Hashimi, H. M. Characterizing the protonation state of cytosine in transient G. C Hoogsteen base pairs in duplex DNA. J Am Chem Soc 135, 6766-6769 (2013)
    • (2013) J Am Chem Soc , vol.135 , pp. 6766-6769
    • Nikolova, E.N.1    Goh, G.B.2    Brooks, C.L.3    Al-Hashimi, H.M.4
  • 29
    • 22844432244 scopus 로고    scopus 로고
    • Intercalator conjugates of pyrimidine locked nucleic acid-modified triplex-forming oligonucleotides: Improving DNA binding properties and reaching cellular activities
    • Brunet, E. et al. Intercalator conjugates of pyrimidine locked nucleic acid-modified triplex-forming oligonucleotides: improving DNA binding properties and reaching cellular activities. Nucleic Acids Res 33, 4223-4234 (2005)
    • (2005) Nucleic Acids Res , vol.33 , pp. 4223-4234
    • Brunet, E.1
  • 30
    • 0029931693 scopus 로고    scopus 로고
    • Type IIS restriction enzyme footprinting I. Measurement of a triple helix dissociation constant with Eco57I at 25 degrees C
    • Ward, B. Type IIS restriction enzyme footprinting I. Measurement of a triple helix dissociation constant with Eco57I at 25 degrees C. Nucleic Acids Res 24, 2435-2440 (1996)
    • (1996) Nucleic Acids Res , vol.24 , pp. 2435-2440
    • Ward, B.1
  • 31
    • 79951997641 scopus 로고    scopus 로고
    • A modular cloning system for standardized assembly of multigene constructs
    • Weber, E., Engler, C., Gruetzner, R., Werner, S. & Marillonnet, S. A modular cloning system for standardized assembly of multigene constructs. PLoS One 6, e16765 (2011)
    • (2011) PLoS One , vol.6 , pp. e16765
    • Weber, E.1    Engler, C.2    Gruetzner, R.3    Werner, S.4    Marillonnet, S.5
  • 32
    • 84921517479 scopus 로고    scopus 로고
    • Functional optimization of gene clusters by combinatorial design and assembly
    • Smanski, M. J. et al. Functional optimization of gene clusters by combinatorial design and assembly. Nat Biotechnol 32, 1241-1249 (2014)
    • (2014) Nat Biotechnol , vol.32 , pp. 1241-1249
    • Smanski, M.J.1
  • 33
    • 53049099395 scopus 로고    scopus 로고
    • Tweaking biological switches through a better understanding of bistability behavior
    • Chatterjee, A., Kaznessis, Y. N. & Hu, W. S. Tweaking biological switches through a better understanding of bistability behavior. Curr Opin Biotechnol 19, 475-481 (2008)
    • (2008) Curr Opin Biotechnol , vol.19 , pp. 475-481
    • Chatterjee, A.1    Kaznessis, Y.N.2    Hu, W.S.3
  • 34
    • 79955707349 scopus 로고    scopus 로고
    • High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice
    • Kim, J. H. et al. High cleavage efficiency of a 2A peptide derived from porcine teschovirus-1 in human cell lines, zebrafish and mice. PLoS One 6, e18556 (2011)
    • (2011) PLoS One , vol.6 , pp. e18556
    • Kim, J.H.1
  • 35
    • 79960683356 scopus 로고    scopus 로고
    • The N-end rule pathway and regulation by proteolysis
    • Varshavsky, A. The N-end rule pathway and regulation by proteolysis. Protein Sci (2011)
    • (2011) Protein Sci
    • Varshavsky, A.1
  • 36
    • 84902159136 scopus 로고    scopus 로고
    • The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
    • Galdzicki, M. et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nat Biotechnol 32, 545-550 (2014)
    • (2014) Nat Biotechnol , vol.32 , pp. 545-550
    • Galdzicki, M.1
  • 37
    • 46949091517 scopus 로고    scopus 로고
    • Refinement and standardization of synthetic biological parts and devices
    • Canton, B., Labno, A. & Endy, D. Refinement and standardization of synthetic biological parts and devices. Nat Biotechnol 26, 787-793 (2008)
    • (2008) Nat Biotechnol , vol.26 , pp. 787-793
    • Canton, B.1    Labno, A.2    Endy, D.3
  • 39
    • 0028500170 scopus 로고
    • The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation
    • Hajdukiewicz, P., Svab, Z. & Maliga, P. The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol Biol 25, 989-994 (1994)
    • (1994) Plant Mol Biol , vol.25 , pp. 989-994
    • Hajdukiewicz, P.1    Svab, Z.2    Maliga, P.3
  • 40
    • 84897546295 scopus 로고    scopus 로고
    • Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing
    • Gao, Y. & Zhao, Y. Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing. J Integr Plant Biol 56, 343-349 (2014)
    • (2014) J Integr Plant Biol , vol.56 , pp. 343-349
    • Gao, Y.1    Zhao, Y.2
  • 41
    • 0029966556 scopus 로고    scopus 로고
    • Adjusting for multiple testing when reporting research results: The Bonferroni vs Holm methods
    • Aickin, M. & Gensler, H. Adjusting for multiple testing when reporting research results: the Bonferroni vs Holm methods. Am J Public Health 86, 726-728 (1996)
    • (1996) Am J Public Health , vol.86 , pp. 726-728
    • Aickin, M.1    Gensler, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.