Molecular investigations on the prevalence and viral load of enteric viruses in pigs from five European countries

Veterinary Microbiology

Volumn 182, Issue , 2016, Pages 75-81

  Zhou, Weiguang ^a,b   Ullman, Karin ^b   Chowdry, Vinay ^b,h   Reining, Márta ^c,i   Benyeda, Zsófia ^c   Baule, Claudia ^b,j   Juremalm, Mikael ^b,k   Wallgren, Per ^b   Schwarz, Lukas ^d   Zhou, Enmin ^e   Pedrero, Sonia Pina ^f   Hennig Pauka, Isabel ^d   Segales, Joaquim ^f,g   Liu, Lihong ^b  

^a INNER MONGOLIA AGRICULTURAL UNIVERSITY   (China)

^b NATIONAL VETERINARY INSTITUTE   (Sweden)

^c PROPHYL Ltd   (Hungary)

^d UNIVERSITY OF VETERINARY MEDICINE   (Austria)

^e NORTHWEST A F UNIVERSITY   (China)

^f IRTA   (Spain)

^g UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^h TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

ⁱ SZENT ISTVÁN UNIVERSITY   (Hungary)

^j Biotechnology and Biosciences Hub   (Mozambique)

^k Boehringer Ingelheim Svanova   (Sweden)

more..

Author keywords

Astrovirus; Diarrhea; Infection; Kobuvirus; Metagenomics; PCV2; Pig; Prevalence; Rotavirus; Viral load

Indexed keywords

ARTICLE; ASTROVIRIDAE; AUSTRIA; ENTERIC VIRUS; EUROPEAN; FECES; GERMANY; GROUPS BY AGE; HEALTH STATUS; HUNGARY; KOBUVIRUS; LIVESTOCK; NONHUMAN; PIG; PORCINE CIRCOVIRUS 2; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; SPAIN; SWEDEN; VIRUS INFECTION; VIRUS LOAD; ANIMAL; ENTEROVIRUS; EUROPE; GENETICS; ISOLATION AND PURIFICATION; PREVALENCE; SWINE DISEASES; VETERINARY; VIROLOGY;

VIRUS RNA;

ANIMALS; ENTEROVIRUSES, PORCINE; EUROPE; PREVALENCE; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SWINE; SWINE DISEASES; VIRAL LOAD;

EID: 84955082115     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2015.10.019     Document Type: Article

References (43)

1. Allan G.M., Ellis J.A. Porcine circoviruses: a review. J. Vet. Diagn. Invest. 2000, 12:3-14.
2. Amimo J.O., Okoth E., Junga J.O., Ogara W.O., Njahira M.N., Wang Q., Vlasova A.N., Saif L.J., Djikeng A. Molecular detection and genetic characterization of kobuviruses and astroviruses in asymptomatic local pigs in East Africa. Arch. Virol. 2014, 159:1313-1319.
3. Baró J., Segalés J., Martínez J. Porcine circovirus type 2 (PCV2) enteric disease: an independent condition or part of the systemic disease?. Vet. Microbiol. 2015, 176:83-87.
4. Bohl E.H. Rotaviral diarrhea in pigs: brief review. J. Am. Vet. Med. Assoc. 1979, 174:613-615.
5. Brnić D., Prpić J., Keros T., Roić B., Starešina V., Jemeršić L. Porcine astrovirus viremia and high genetic variability in pigs on large holdings in Croatia. Infect. Genet. Evol. 2013, 14:258-264.
6. Brnić D., Jemeršić L., Keros T., Prpić J. High prevalence and genetic heterogeneity of porcine astroviruses in domestic pigs. Vet. J. 2014, 202:390-392.
7. Chang K.O., Saif L.J., Kim Y. Reoviruses (rotaviruses and reoviruses). Diseases of Swine 2012, 1098-1118. Wiley-Blackwell, West Sussex, UK. 10th ed. J. Zimmerman, L. Karriker, A. Ramirez, K. Schwartz, G. Stevenson (Eds.).
8. Chun Y.H., Jeong Y.J., Park S.I., Hosmillo M., Shin D.J., Kwon H.J., Kang S.Y., Woo S.K., Kang M.I., Cho K.O. Development of one-step real-time reverse transcription polymerase chain reaction assays for rapid detection of porcine group C rotaviruses. J. Vet. Diagn. Invest. 2010, 22:74-77.
9. Di Profio F., Ceci C., Di Felice E., Marsilio F., Di Martino B. Molecular detection of porcine kobuviruses in Italian swine. Res. Vet. Sci. 2013, 95:782-785.
10. Dufkova L., Scigalkova I., Moutelikova R., Malenovska H., Prodelalova J. Genetic diversity of porcine sapoviruses, kobuviruses, and astroviruses in asymptomatic pigs: an emerging new sapovirus GIII genotype. Arch. Virol. 2013, 158:549-558.
11. Dupont K., Nielsen E.O., Baekbo P., Larsen L.E. Genomic analysis of PCV2 isolates from Danish archives and a current PMWS case-control study supports a shift in genotypes with time. Vet. Microbiol. 2008, 128:56-64.
12. Gagnon C.A., Music N., Fontaine G., Tremblay D., Harel J. Emergence of a new type of porcine circovirus in swine (PCV): a type 1 and type 2 PCV recombinant. Vet. Microbiol. 2010, 144:18-23.
13. Halaihel N., Masía R.M., Fernández-Jiménez M., Ribes J.M., Montava R., De Blas I., Gironés O., Alonso J.L., Buesa J. Enteric calicivirus and rotavirus infections in domestic pigs. Epidemiol. Infect. 2010, 138:542-548.
14. Hestad S., Möttus I., Skiöldebrand E., Lundeheim N., Christensson D., Wallgren P. Prevalence of Isospora suis and rotavirus in Swedish piglets during the suckling and early post weaning period. Proc. IPVS 2004, 18:244.
15. Indik S., Valíček L., Šmíd B., Dvořáková D., Rodák L. Isolation and partial characterization of a novel porcine astrovirus. Vet. Microbiol. 2006, 117:276-283.
16. Kapikian A.Z. A rotavirus vaccine for prevention of severe diarrhoea of infants and young children: development: utilization and withdrawal. Novartis Found. Symp. 2001, 238:153-171.
17. Kekarainen T., Montoya M., Dominguez J., Mateu E., Segalés J. Porcine circovirus type 2 (PCV2) viral components immunomodulate recall antigen responses. Vet. Immunol. Immunopathol. 2008, 124:41-49.
18. Khamrin P., Maneekarn N., Kongkaew A., Kongkaew S., Okitsu S., Ushijima H. Porcine kobuvirus in piglets, Thailand. Emerg. Infect. Dis. 2009, 15:2075-2077.
19. Khamrin P., Maneekarn N., Hidaka S., Kishikawa S., Ushijima K., Okitsu S., Ushijima H. Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infect. Genet. Evol. 2010, 10:950-954.
20. Laurin M.A., Dastor M., L'Homme Y. Detection and genetic characterization of a novel pig astrovirus: relationship to other astroviruses. Arch. Virol. 2011, 156:2095-2099.
21. Lee M.H., Jeoung H.Y., Park H.R., Lim J.A., Song J.Y., An D.J. Phylogenetic analysis of porcine astrovirus in domestic pigs and wild boars in South Korea. Virus Genes 2013, 46:175-181.
22. Liu L., Xia H., Belák S., Baule C. A TaqMan real-time RT-PCR assay for selective detection of atypical bovine pestiviruses in clinical samples and biological products. J. Virol. Methods 2008, 154:82-85.
23. Liu J., Kibiki G., Maro V., Maro A., Kumburu H., Swai N., Taniuchi M., Gratz J., Toney D., Kang G., Houpt E. Multiplex reverse transcription PCR Luminex assay for detection and quantitation of viral agents of gastroenteritis. J. Clin. Virol. 2011, 50:308-313.
24. Liu L., Xia H., Everett H., Sosan O., Crooke H., Meindl-Böhmer A., Qiu H.J., Moennig V., Belák S., Widén F. A generic real-time TaqMan assay for specific detection of lapinized Chinese vaccines against classical swine fever. J. Virol. Methods 2011, 175:170-174.
25. Logan C., O'Leary J.J., O'Sullivan N. Real-time reverse transcription-PCR for detection of rotavirus and adenovirus as causative agents of acute viral gastroenteritis in children. J. Clin. Microbiol. 2006, 44:3189-3195.
26. Luo Z., Roi S., Dastor M., Gallice E., Laurin M.A., L'Homme Y. Multiple novel and prevalent astroviruses in pigs. Vet. Microbiol. 2011, 149:316-323.
27. Machnowska P., Ellerbroek L., Johne R. Detection and characterization of potentially zoonotic viruses in faeces of pigs at slaughter in Germany. Vet. Microbiol. 2014, 168:60-68.
28. Marthaler D., Homwong N., Rossow K., Culhane M., Goyal S., Collins J., Matthijnssens J., Ciarlet M. Rapid detection and high occurrence of porcine rotavirus A, B, and C by RT-qPCR in diagnostic samples. J. Virol. Methods 2014, 209:30-34.
29. Monini M., Di Bartolo I., Ianiro G., Angeloni G., Magistrali C.F., Ostanello F., Ruggeri F.M. Detection and molecular characterization of zoonotic viruses in swine fecal samples in Italian pig herds. Arch. Virol. 2015, [Epub ahead of print].
30. Mor S.K., Chander Y., Marthaler D., Patnayak D.P., Goyal S.M. Detection and molecular characterization of porcine astrovirus strains associated with swine diarrhea. J. Vet. Diagn. Invest. 2012, 24:1064-1067.
31. Park S.J., Kim H.K., Moon H.J., Song D.S., Rho S.M., Han J.Y., Nguyen V.G., Park B.K. Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch. Virol. 2010, 155:1803-1811.
32. Reuter G., Pankovics P., Boros A. Identification of a novel astrovirus in a domestic pig in Hungary. Arch. Virol. 2011, 156:125-128.
33. Reuter G., Nemes C., Boros A., Kapusinszky B., Delwart E., Pankovics P. Astrovirus in wild boars (Sus scrofa) in Hungary. Arch. Virol. 2012, 157:1143-1147.
34. Segalés J., Allan G.M., Domingo M. Porcine circovirus diseases. Anim. Health Res. Rev. 2005, 6:119-142.
35. Segalés J., Olvera A., Grau-Roma L., Charreyre C., Nauwynck H., Larsen L., Dupont K., McCullough K., Ellis J., Krakowka S., Mankertz A., Fredholm M., Fossum C., Timmusk S., Stockhofe-Zurwieden N., Beattie V., Armstrong D., Grassland B., Baekbo P., Allan G. PCV-2 genotype definition and nomenclature. Vet. Rec. 2008, 162:867-868.
36. Segalés J., Kekarainen T., Cortey M. The natural history of porcine circovirus type 2: from an inoffensive virus to a devastating swine disease?. Vet. Microbiol. 2013, 165:13-20.
37. Shan T., Li L., Simmonds P., Wang C., Moeser A., Delwart E. The fecal virome of pigs on a high-density farm. J. Virol. 2011, 85:11697-11708.
38. Shimizu M., Shirai J., Narita M., Yamane T. Cytopathic astrovirus isolated from porcine acute gastroenteritis in an established cell line derived from porcine embryonic kidney. J. Clin. Microbiol. 1990, 28:201-206.
39. Wallgren P., Ullman K., Baule C., Liu L., Juremalm M. Presence of astrovirus in healthy piglets and in piglets with signs of neonatal diarrhea of unknown origin. Proc. IPVS 2014, 23:60.
40. Wieler L.H., Ilieff A., Herbst W., Bauer C., Vieler E., Bauerfeind R., Failing K., Klös H., Wengert D., Baljer G., Zahner H. Prevalence of enteropathogens in suckling and weaned piglets with diarrhoea in southern Germany. J. Vet. Med. B Infect. Dis. Vet. Public Health 2001, 48:151-159.
41. Xiao C.T., Giménez-Lirola L.G., Gerber P.F., Jiang Y.H., Halbur P.G., Opriessnig T. Identification and characterization of novel porcine astroviruses (PAstVs) with high prevalence and frequent co-infection of individual pigs with multiple PAstV types. J. Gen. Virol. 2013, 94:570-582.
42. Yang Z., Jin W., Zhao Z., Lin W., Zhang D., Yu E., Qin A., Yang H. Genetic characterization of porcine kobuvirus and detection of coinfecting pathogens in diarrheic pigs in Jiangsu Province, China. Arch. Virol. 2014, 159:3407-3412.
43. Zhang Q., Hu R., Tang X., Wu C., He Q., Zhao Z., Chen H., Wu B. Occurrence and investigation of enteric viral infections in pigs with diarrhea in China. Arch. Virol. 2013, 158:1631-1636.