Genetic characterization of porcine kobuvirus and detection of coinfecting pathogens in diarrheic pigs in Jiangsu Province, China

Archives of Virology

Volumn 159, Issue 12, 2014, Pages 3407-3412

  Yang, Zhen ^a   Jin, Wenjie ^a,b   Zhao, Zhenpeng ^a   Lin, Weidong ^a   Zhang, Di ^a   Yu, Enqi ^a   Qin, Aijian ^a   Yang, Hanchun ^b  

^a YANGZHOU UNIVERSITY   (China)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS PROTEIN;

ANIMAL; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; DIARRHEA; GENETICS; ISOLATION AND PURIFICATION; KOBUVIRUS; PHYLOGENY; PICORNAVIRUS INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SWINE; SWINE DISEASE; VETERINARY; VIROLOGY;

ANIMALS; CHINA; CLUSTER ANALYSIS; DIARRHEA; KOBUVIRUS; PHYLOGENY; PICORNAVIRIDAE INFECTIONS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SWINE; SWINE DISEASES; VIRAL PROTEINS;

EID: 84922392539     PISSN: 03048608     EISSN: 14328798     Source Type: Journal    
DOI: 10.1007/s00705-014-2204-2     Document Type: Article

References (28)

1. An DJ, Jeoung HY, Jeong W, Lee HS, Park JY, Kim B (2011) Porcine kobuvirus from pig stool in Korea. Virus genes 42:208–211
2. ICTV Online (2012) Discussion forum of the International Committee on Taxonomy of Viruses, ICTV 2012 Official Taxonomy. http://talk.ictvonline.org
3. Barry AF, Ribeiro J, Alfieri AF, van der Poel WH, Alfieri AA (2011) First detection of kobuvirus in farm animals in Brazil and The Netherlands. Infect Genet Evol 11:1811–1814
4. Chen L, Zhu L, Zhou YC, Xu ZW, Guo WZ, Yang WY (2013) Molecular and phylogenetic analysis of the porcine kobuvirus VP1 region using infected pigs from Sichuan Province, China. Virol J 10:281
5. Di Martino B, Di Profio F, Di Felice E, Ceci C, Pistilli MG, Marsilio F (2012) Molecular detection of bovine kobuviruses in Italy. Arch Virol 157:2393–2396
6. Di Profio F, Ceci C, Di Felice E, Marsilio F, Di Martino B (2013) Molecular detection of porcine kobuviruses in Italian swine. Res Vet 95:782–785
7. Dufkova L, Scigalkova I, Moutelikova R, Malenovska H, Prodelalova J (2013) Genetic diversity of porcine sapoviruses, kobuviruses, and astroviruses in asymptomatic pigs: an emerging new sapovirus GIII genotype. Arch Virol 158:549–558
8. Fan S, Sun H, Ying Y, Gao X, Wang Z, Yu Y, Li Y, Wang T, Yu Z, Yang S, Zhao Y, Qin C, Gao Y, Xia X (2013) Identification and characterization of porcine kobuvirus variant isolated from suckling piglet in Gansu province, China. Viruses 5:2548–2560
9. Khamrin P, Maneekarn N, Kongkaew A, Kongkaew S, Okitsu S, Ushijima H (2009) Porcine kobuvirus in piglets, Thailand. Emerg Infect Dis 15:2075–2076
10. Khamrin P, Maneekarn N, Hidaka S, Kishikawa S, Ushijima K, Okitsu S, Ushijima H (2010) Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infect Genet Evol 10:950–954
11. Lee MH, Jeoung HY, Lim JA, Song JY, Song DS, An DJ (2012) Kobuvirus in South Korean black goats. Virus Genes 45:186–189
12. Li L, Victoria JG, Wang C, Jones M, Fellers GM, Kunz TH, Delwart E (2010) Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J Virol 84:6955–6965
13. Li L, Pesavento PA, Shan T, Leutenegger CM, Wang C, Delwart E (2011) Viruses in diarrhoeic dogs include novel kobuviruses and sapoviruses. J Gen Virol 92:2534–2541
14. Lin Y, Xiao S, Zeng Y, Song T, Zeng S, Chen H, Fang L (2012) Complete genome sequence of porcine kobuvirus strain WUH1. J Virol 86:7010
15. Okitsu S, Khamrin P, Thongprachum A, Hidaka S, Kongkaew S, Kongkaew A, Maneekarn N, Mizuguchi M, Hayakawa S, Ushijima H (2012) Sequence analysis of porcine kobuvirus VP1 region detected in pigs in Japan and Thailand. Virus Genes 44:253–257
16. Park SJ, Kim HK, Moon HJ, Song DS, Rho SM, Han JY, Nguyen VG, Park BK (2010) Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch Virol 1803–1811
17. Park SJ, Kim HK, Song DS, Moon HJ, Park BK (2011) Molecular detection and genetic characterization of kobuviruses in fecal samples collected from diarrheic cattle in Korea. Infect Genet Evol 11:1178–1182
18. Reuter G, Boldizsar A, Kiss I, Pankovics P (2008) Candidate new species of Kobuvirus in porcine hosts. Emerg Infect Dis 14:1968–1970
19. Reuter G, Boros A, Pankovics P, Egyed L (2010) Kobuvirus in domestic sheep, Hungary. Emerg Infect Dis 16:869–870
20. Reuter G, Boros A, Pankovics P (2011) Kobuviruses - a comprehensive review. Rev Med Virol 21:32–41
21. Reuter G, Nemes C, Boros A, Kapusinszky B, Delwart E, Pankovics P (2013) Porcine kobuvirus in wild boars (Sus scrofa). Arch Virol 158:281–282
22. Sisay Z, Wang Q, Oka T, Saif L (2013) Prevalence and molecular characterization of porcine enteric caliciviruses and first detection of porcine kobuviruses in US swine. Arch Virol 158:1583–1588
23. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
24. Verma H, Mor SK, Abdel-Glil MY, Goyal SM (2013) Identification and molecular characterization of porcine kobuvirus in US swine. Virus Genes 46:551–553
25. Wang C, Lan D, Hua X (2011) Porcine kobuvirus from pig stool specimens in Shanghai, China. Virus Genes 43:350–352
26. Yamashita T, Kobayashi S, Sakae K, Nakata S, Chiba S, Ishihara Y, Isomura S (1991) Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J Infect Dis 164:954–957
27. Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K (2003) Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol 84:3069–3077
28. Yu JM, Jin M, Zhang Q, Li HY, Li DD, Xu ZQ, Li JS, Cui SX, Yang SH, Liu N, Duan ZJ (2009) Candidate porcine Kobuvirus, China. Emerg Infect Dis 15:823–825