메뉴 건너뛰기




Volumn 12, Issue 10, 2015, Pages 1152-1158

Variable presence of 5-methylcytosine in commercial RNA and DNA

Author keywords

DNA modification; Mass spectrometry; Methylcytosine; Modified nucleoside; RNA modification

Indexed keywords

5 METHYLCYTOSINE; DNA; OLIGONUCLEOTIDE; RNA;

EID: 84954534977     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.1080/15476286.2015.1076612     Document Type: Article
Times cited : (14)

References (35)
  • 1
    • 15744401773 scopus 로고    scopus 로고
    • Eukaryotic cytosine methyltransferases
    • PMID: 15952895
    • Goll MG, Bestor TH. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005; 74: 481-514; PMID: 15952895; http://dx. doi. org/10. 1146/annurev. biochem. 74. 010904. 153721
    • (2005) Annu Rev Biochem , vol.74 , pp. 481-514
    • Goll, M.G.1    Bestor, T.H.2
  • 2
    • 84878260646 scopus 로고    scopus 로고
    • TETonic shift: Biological roles of TET proteins in DNA demethylation and transcription
    • PMID: 23698584
    • Pastor WA, Aravind L, Rao A. TETonic shift: biological roles of TET proteins in DNA demethylation and transcription. Nat Rev Mol Cell Biol 2013; 14: 341-56; PMID: 23698584; http://dx. doi. org/10. 1038/nrm3589
    • (2013) Nat Rev Mol Cell Biol , vol.14 , pp. 341-356
    • Pastor, W.A.1    Aravind, L.2    Rao, A.3
  • 4
    • 84898814417 scopus 로고    scopus 로고
    • Gene expression regulation mediated through reversible m(6)A RNA methylation
    • PMID: 24662220
    • Fu Y, Dominissini D, Rechavi G, He C. Gene expression regulation mediated through reversible m(6)A RNA methylation. Nat Rev Genetics 2014; 15: 293-306; PMID: 24662220; http://dx. doi. org/10. 1038/ nrg3724
    • (2014) Nat Rev Genetics , vol.15 , pp. 293-306
    • Fu, Y.1    Dominissini, D.2    Rechavi, G.3    He, C.4
  • 5
    • 84872847340 scopus 로고    scopus 로고
    • Reversible RNA adenosine methylation in biological regulation
    • PMID: 23218460
    • Jia G, Fu Y, He C. Reversible RNA adenosine methylation in biological regulation. Trends Genet 2013; 29: 108-15; PMID: 23218460; http://dx. doi. org/ 10. 1016/j. tig. 2012. 11. 003
    • (2013) Trends Genet , vol.29 , pp. 108-115
    • Jia, G.1    Fu, Y.2    He, C.3
  • 6
    • 84877750692 scopus 로고    scopus 로고
    • FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA
    • PMID: 23653210
    • Fu Y, Jia G, Pang X, Wang RN, Wang X, Li CJ, Smemo S, Dai Q, Bailey KA, Nobrega MA, et al. FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA. Nat Commun 2013; 4: 1798; PMID: 23653210; http:// dx. doi. org/10. 1038/ncomms2822
    • (2013) Nat Commun , vol.4 , pp. 1798
    • Fu, Y.1    Jia, G.2    Pang, X.3    Wang, R.N.4    Wang, X.5    Li, C.J.6    Smemo, S.7    Dai, Q.8    Bailey, K.A.9    Nobrega, M.A.10
  • 8
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons
    • PMID: 22608085
    • Meyer KD, Saletore Y, Zumbo P, Elemento O, Mason CE, Jaffrey SR. Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons. Cell 2012; 149: 1635-46; PMID: 22608085; http://dx. doi. org/10. 1016/j. cell. 2012. 05. 003
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.D.1    Saletore, Y.2    Zumbo, P.3    Elemento, O.4    Mason, C.E.5    Jaffrey, S.R.6
  • 9
    • 77954127204 scopus 로고    scopus 로고
    • Bisulfite methylation profiling of large genomes
    • PMID: 22121871
    • Reinders J, Paszkowski J. Bisulfite methylation profiling of large genomes. Epigenomics 2010; 2: 209-20; PMID: 22121871; http://dx. doi. org/10. 2217/ epi. 10. 6
    • (2010) Epigenomics , vol.2 , pp. 209-220
    • Reinders, J.1    Paszkowski, J.2
  • 10
    • 59649120058 scopus 로고    scopus 로고
    • RNA cytosine methylation analysis by bisulfite sequencing
    • PMID: 19059995
    • Schaefer M, Pollex T, Hanna K, Lyko F. RNA cytosine methylation analysis by bisulfite sequencing. Nucleic Acids Res 2009; 37: e12; PMID: 19059995; http://dx. doi. org/10. 1093/nar/gkn954
    • (2009) Nucleic Acids Res , vol.37
    • Schaefer, M.1    Pollex, T.2    Hanna, K.3    Lyko, F.4
  • 11
    • 84879642219 scopus 로고    scopus 로고
    • Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs
    • PMID: 23825970
    • Edelheit S, Schwartz S, Mumbach MR, Wurtzel O, Sorek R. Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs. PLoS Genet 2013; 9: e1003602; PMID: 23825970; http://dx. doi. org/10. 1371/journal. pgen. 1003602
    • (2013) PLoS Genet , vol.9
    • Edelheit, S.1    Schwartz, S.2    Mumbach, M.R.3    Wurtzel, O.4    Sorek, R.5
  • 13
    • 78049341213 scopus 로고    scopus 로고
    • Lack of evidence for DNA methylation of Invader4 retroelements in Drosophila and implications for Dnmt2-mediated epigenetic regulation
    • PMID: 20980983; author reply 1
    • Schaefer M, Lyko F. Lack of evidence for DNA methylation of Invader4 retroelements in Drosophila and implications for Dnmt2-mediated epigenetic regulation. Nat Genet 2010; 42: 920-1; author reply 1; PMID: 20980983; http://dx. doi. org/10. 1038/ng1110-920
    • (2010) Nat Genet , vol.42 , pp. 920-921
    • Schaefer, M.1    Lyko, F.2
  • 14
    • 67349217819 scopus 로고    scopus 로고
    • Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2
    • PMID: 19412177
    • Phalke S, Nickel O, Walluscheck D, Hortig F, Onorati MC, Reuter G. Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2. Nat Genet 2009; 41: 696-702; PMID: 19412177; http://dx. doi. org/10. 1038/ng. 360
    • (2009) Nat Genet , vol.41 , pp. 696-702
    • Phalke, S.1    Nickel, O.2    Walluscheck, D.3    Hortig, F.4    Onorati, M.C.5    Reuter, G.6
  • 16
    • 84898871225 scopus 로고    scopus 로고
    • Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species
    • PMID: 24640988
    • Capuano F, Mulleder M, Kok R, Blom HJ, Ralser M. Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species. Anal Chem 2014; 86: 3697-702; PMID: 24640988; http://dx. doi. org/10. 1021/ac500447w
    • (2014) Anal Chem , vol.86 , pp. 3697-3702
    • Capuano, F.1    Mulleder, M.2    Kok, R.3    Blom, H.J.4    Ralser, M.5
  • 17
    • 84888605243 scopus 로고    scopus 로고
    • Synthesis of DNA/RNA and their analogs via phosphoramidite and H-phosphonate chemistries
    • PMID: 24252996
    • Roy S, Caruthers M. Synthesis of DNA/RNA and their analogs via phosphoramidite and H-phosphonate chemistries. Molecules 2013; 18: 14268-84; PMID: 24252996; http://dx. doi. org/10. 3390/ molecules181114268
    • (2013) Molecules , vol.18 , pp. 14268-14284
    • Roy, S.1    Caruthers, M.2
  • 18
    • 7944234229 scopus 로고    scopus 로고
    • RNA oligonucleotide synthesis via 50-silyl-20-orthoester chemistry
    • PMID: 15333896
    • Hartsel SA, Kitchen DE, Scaringe SA, Marshall WS. RNA oligonucleotide synthesis via 50-silyl-20-orthoester chemistry. Methods Mol Biol 2005; 288: 33-50; PMID: 15333896
    • (2005) Methods Mol Biol , vol.288 , pp. 33-50
    • Hartsel, S.A.1    Kitchen, D.E.2    Scaringe, S.A.3    Marshall, W.S.4
  • 19
    • 84954542200 scopus 로고    scopus 로고
    • Preparation of 50-silyl-20-orthoester ribonucleosides for use in oligoribonucleotide synthesis
    • PMID: 18428924
    • Scaringe SA, Kitchen D, Kaiser RJ, Marshall WS. Preparation of 50-silyl-20-orthoester ribonucleosides for use in oligoribonucleotide synthesis. Methods Mol Biol 2005; 288: 33-50; PMID: 18428924
    • (2005) Methods Mol Biol , vol.288 , pp. 33-50
    • Scaringe, S.A.1    Kitchen, D.2    Kaiser, R.J.3    Marshall, W.S.4
  • 20
    • 0025683270 scopus 로고
    • Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry
    • PMID: 1706062
    • Crain PF. Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. Methods Enzymol 1990; 193: 782-90; PMID: 1706062; http://dx. doi. org/10. 1016/0076-6879(90)93450-Y
    • (1990) Methods Enzymol , vol.193 , pp. 782-790
    • Crain, P.F.1
  • 21
    • 84879766748 scopus 로고    scopus 로고
    • Structure-function relationship of substituted bromomethylcoumarins in nucleoside specificity of RNA alkylation
    • PMID: 23844135
    • Kellner S, Kollar LB, Ochel A, Ghate M, Helm M. Structure-function relationship of substituted bromomethylcoumarins in nucleoside specificity of RNA alkylation. PloS one 2013; 8: e67945; PMID: 23844135; http://dx. doi. org/10. 1371/journal. pone. 0067945
    • (2013) PloS one , vol.8
    • Kellner, S.1    Kollar, L.B.2    Ochel, A.3    Ghate, M.4    Helm, M.5
  • 23
    • 54949112814 scopus 로고    scopus 로고
    • Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability
    • PMID: 18797453
    • Kariko K, Muramatsu H, Welsh FA, Ludwig J, Kato H, Akira S, Weissman D. Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability. Mol Ther 2008; 16: 1833-40; PMID: 18797453; http://dx. doi. org/10. 1038/ mt. 2008. 200
    • (2008) Mol Ther , vol.16 , pp. 1833-1840
    • Kariko, K.1    Muramatsu, H.2    Welsh, F.A.3    Ludwig, J.4    Kato, H.5    Akira, S.6    Weissman, D.7
  • 24
    • 84863496034 scopus 로고    scopus 로고
    • RNA mediated Toll-like receptor stimulation in health and disease
    • PMID: 22617878
    • Dalpke A, Helm M. RNA mediated Toll-like receptor stimulation in health and disease. RNA Biol 2012; 9: 828-42; PMID: 22617878; http://dx. doi. org/ 10. 4161/rna. 20206
    • (2012) RNA Biol , vol.9 , pp. 828-842
    • Dalpke, A.1    Helm, M.2
  • 25
    • 77950476036 scopus 로고    scopus 로고
    • Five-methylcytosine in RNA: Detection, enzymatic formation and biological functions
    • PMID: 20007150
    • Motorin Y, Lyko F, Helm M. Five-methylcytosine in RNA: detection, enzymatic formation and biological functions. Nucleic Acids Res 2010; 38: 1415-30; PMID: 20007150; http://dx. doi. org/10. 1093/nar/ gkp1117
    • (2010) Nucleic Acids Res , vol.38 , pp. 1415-1430
    • Motorin, Y.1    Lyko, F.2    Helm, M.3
  • 28
    • 77955884641 scopus 로고    scopus 로고
    • RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
    • PMID: 20679393
    • Schaefer M, Pollex T, Hanna K, Tuorto F, Meusburger M, Helm M, Lyko F. RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev 2010; 24: 1590-5; PMID: 20679393; http:// dx. doi. org/10. 1101/gad. 586710
    • (2010) Genes Dev , vol.24 , pp. 1590-1595
    • Schaefer, M.1    Pollex, T.2    Hanna, K.3    Tuorto, F.4    Meusburger, M.5    Helm, M.6    Lyko, F.7
  • 30
    • 80955130871 scopus 로고    scopus 로고
    • RNA nucleotide methylation
    • PMID: 21823225
    • Motorin Y, Helm M. RNA nucleotide methylation. Wiley Interdiscip Rev RNA 2011; 2: 611-31; PMID: 21823225; http://dx. doi. org/10. 1002/wrna. 79
    • (2011) Wiley Interdiscip Rev RNA , vol.2 , pp. 611-631
    • Motorin, Y.1    Helm, M.2
  • 33
    • 84898871225 scopus 로고    scopus 로고
    • Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species
    • Apr 15
    • Capuano F, Mülleder M, Kok R, Blom HJ, Ralser M. Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species. Anal Chem. 2014 Apr 15; 86(8): 3697-702; http://dx. doi. org/10. 1021/ac500447w
    • (2014) Anal Chem , vol.86 , Issue.8 , pp. 3697-3702
    • Capuano, F.1    Mülleder, M.2    Kok, R.3    Blom, H.J.4    Ralser, M.5
  • 35
    • 84936858061 scopus 로고    scopus 로고
    • Intermolecular 'cross-torque': The N4-cytosine propargyl residue is rotated to the 'CH'-edge as a result of Watson-Crick interaction
    • Jun 23
    • Domingo O, Hellmuth I, Jäschke A, Kreutz C, Helm M. Intermolecular 'cross-torque': the N4-cytosine propargyl residue is rotated to the 'CH'-edge as a result of Watson-Crick interaction. Nucleic Acids Res 2015 Jun 23; 43(11): 5275-83.
    • (2015) Nucleic Acids Res , vol.43 , Issue.11 , pp. 5275-5283
    • Domingo, O.1    Hellmuth, I.2    Jäschke, A.3    Kreutz, C.4    Helm, M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.