-
1
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
PMID: 15952895
-
Goll MG, Bestor TH. Eukaryotic cytosine methyltransferases. Annu Rev Biochem 2005; 74: 481-514; PMID: 15952895; http://dx. doi. org/10. 1146/annurev. biochem. 74. 010904. 153721
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
2
-
-
84878260646
-
TETonic shift: Biological roles of TET proteins in DNA demethylation and transcription
-
PMID: 23698584
-
Pastor WA, Aravind L, Rao A. TETonic shift: biological roles of TET proteins in DNA demethylation and transcription. Nat Rev Mol Cell Biol 2013; 14: 341-56; PMID: 23698584; http://dx. doi. org/10. 1038/nrm3589
-
(2013)
Nat Rev Mol Cell Biol
, vol.14
, pp. 341-356
-
-
Pastor, W.A.1
Aravind, L.2
Rao, A.3
-
3
-
-
84902831568
-
Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA
-
PMID: 24838012
-
Pfaffeneder T, Spada F, Wagner M, Brandmayr C, Laube SK, Eisen D, Truss M, Steinbacher J, Hackner B, Kotljarova O, et al. Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA. Nat Chem Biol 2014; 10: 574-81; PMID: 24838012; http://dx. doi. org/10. 1038/ nchembio. 1532
-
(2014)
Nat Chem Biol
, vol.10
, pp. 574-581
-
-
Pfaffeneder, T.1
Spada, F.2
Wagner, M.3
Brandmayr, C.4
Laube, S.K.5
Eisen, D.6
Truss, M.7
Steinbacher, J.8
Hackner, B.9
Kotljarova, O.10
-
4
-
-
84898814417
-
Gene expression regulation mediated through reversible m(6)A RNA methylation
-
PMID: 24662220
-
Fu Y, Dominissini D, Rechavi G, He C. Gene expression regulation mediated through reversible m(6)A RNA methylation. Nat Rev Genetics 2014; 15: 293-306; PMID: 24662220; http://dx. doi. org/10. 1038/ nrg3724
-
(2014)
Nat Rev Genetics
, vol.15
, pp. 293-306
-
-
Fu, Y.1
Dominissini, D.2
Rechavi, G.3
He, C.4
-
5
-
-
84872847340
-
Reversible RNA adenosine methylation in biological regulation
-
PMID: 23218460
-
Jia G, Fu Y, He C. Reversible RNA adenosine methylation in biological regulation. Trends Genet 2013; 29: 108-15; PMID: 23218460; http://dx. doi. org/ 10. 1016/j. tig. 2012. 11. 003
-
(2013)
Trends Genet
, vol.29
, pp. 108-115
-
-
Jia, G.1
Fu, Y.2
He, C.3
-
6
-
-
84877750692
-
FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA
-
PMID: 23653210
-
Fu Y, Jia G, Pang X, Wang RN, Wang X, Li CJ, Smemo S, Dai Q, Bailey KA, Nobrega MA, et al. FTO-mediated formation of N6-hydroxymethyladenosine and N6-formyladenosine in mammalian RNA. Nat Commun 2013; 4: 1798; PMID: 23653210; http:// dx. doi. org/10. 1038/ncomms2822
-
(2013)
Nat Commun
, vol.4
, pp. 1798
-
-
Fu, Y.1
Jia, G.2
Pang, X.3
Wang, R.N.4
Wang, X.5
Li, C.J.6
Smemo, S.7
Dai, Q.8
Bailey, K.A.9
Nobrega, M.A.10
-
7
-
-
84860779086
-
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
-
PMID: 22575960
-
Dominissini D, Moshitch-Moshkovitz S, Schwartz S, Salmon-Divon M, Ungar L, Osenberg S, Cesarkas K, Jacob-Hirsch J, Amariglio N, Kupiec M, et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature 2012; 485: 201-6; PMID: 22575960; http://dx. doi. org/10. 1038/ nature11112
-
(2012)
Nature
, vol.485
, pp. 201-206
-
-
Dominissini, D.1
Moshitch-Moshkovitz, S.2
Schwartz, S.3
Salmon-Divon, M.4
Ungar, L.5
Osenberg, S.6
Cesarkas, K.7
Jacob-Hirsch, J.8
Amariglio, N.9
Kupiec, M.10
-
8
-
-
84862649489
-
Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons
-
PMID: 22608085
-
Meyer KD, Saletore Y, Zumbo P, Elemento O, Mason CE, Jaffrey SR. Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons. Cell 2012; 149: 1635-46; PMID: 22608085; http://dx. doi. org/10. 1016/j. cell. 2012. 05. 003
-
(2012)
Cell
, vol.149
, pp. 1635-1646
-
-
Meyer, K.D.1
Saletore, Y.2
Zumbo, P.3
Elemento, O.4
Mason, C.E.5
Jaffrey, S.R.6
-
9
-
-
77954127204
-
Bisulfite methylation profiling of large genomes
-
PMID: 22121871
-
Reinders J, Paszkowski J. Bisulfite methylation profiling of large genomes. Epigenomics 2010; 2: 209-20; PMID: 22121871; http://dx. doi. org/10. 2217/ epi. 10. 6
-
(2010)
Epigenomics
, vol.2
, pp. 209-220
-
-
Reinders, J.1
Paszkowski, J.2
-
10
-
-
59649120058
-
RNA cytosine methylation analysis by bisulfite sequencing
-
PMID: 19059995
-
Schaefer M, Pollex T, Hanna K, Lyko F. RNA cytosine methylation analysis by bisulfite sequencing. Nucleic Acids Res 2009; 37: e12; PMID: 19059995; http://dx. doi. org/10. 1093/nar/gkn954
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Lyko, F.4
-
11
-
-
84879642219
-
Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs
-
PMID: 23825970
-
Edelheit S, Schwartz S, Mumbach MR, Wurtzel O, Sorek R. Transcriptome-wide mapping of 5-methylcytidine RNA modifications in bacteria, archaea, and yeast reveals m5C within archaeal mRNAs. PLoS Genet 2013; 9: e1003602; PMID: 23825970; http://dx. doi. org/10. 1371/journal. pgen. 1003602
-
(2013)
PLoS Genet
, vol.9
-
-
Edelheit, S.1
Schwartz, S.2
Mumbach, M.R.3
Wurtzel, O.4
Sorek, R.5
-
12
-
-
84860751168
-
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA
-
PMID: 22344696
-
Squires JE, Patel HR, Nousch M, Sibbritt T, Humphreys DT, Parker BJ, Suter CM, Preiss T. Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic Acids Res 2012; 40: 5023-33; PMID: 22344696; http://dx. doi. org/10. 1093/nar/ gks144
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 5023-5033
-
-
Squires, J.E.1
Patel, H.R.2
Nousch, M.3
Sibbritt, T.4
Humphreys, D.T.5
Parker, B.J.6
Suter, C.M.7
Preiss, T.8
-
13
-
-
78049341213
-
Lack of evidence for DNA methylation of Invader4 retroelements in Drosophila and implications for Dnmt2-mediated epigenetic regulation
-
PMID: 20980983; author reply 1
-
Schaefer M, Lyko F. Lack of evidence for DNA methylation of Invader4 retroelements in Drosophila and implications for Dnmt2-mediated epigenetic regulation. Nat Genet 2010; 42: 920-1; author reply 1; PMID: 20980983; http://dx. doi. org/10. 1038/ng1110-920
-
(2010)
Nat Genet
, vol.42
, pp. 920-921
-
-
Schaefer, M.1
Lyko, F.2
-
14
-
-
67349217819
-
Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2
-
PMID: 19412177
-
Phalke S, Nickel O, Walluscheck D, Hortig F, Onorati MC, Reuter G. Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2. Nat Genet 2009; 41: 696-702; PMID: 19412177; http://dx. doi. org/10. 1038/ng. 360
-
(2009)
Nat Genet
, vol.41
, pp. 696-702
-
-
Phalke, S.1
Nickel, O.2
Walluscheck, D.3
Hortig, F.4
Onorati, M.C.5
Reuter, G.6
-
15
-
-
84922393701
-
Absolute and relative quantification of RNA modifications via biosynthetic isotopomers
-
Kellner S, Ochel A, Thuring K, Spenkuch F, Neumann J, Sharma S, Entian KD, Schneider D, Helm M. Absolute and relative quantification of RNA modifications via biosynthetic isotopomers. Nucleic Acids Res 2014; 42(18): e142.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.18
-
-
Kellner, S.1
Ochel, A.2
Thuring, K.3
Spenkuch, F.4
Neumann, J.5
Sharma, S.6
Entian, K.D.7
Schneider, D.8
Helm, M.9
-
16
-
-
84898871225
-
Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species
-
PMID: 24640988
-
Capuano F, Mulleder M, Kok R, Blom HJ, Ralser M. Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species. Anal Chem 2014; 86: 3697-702; PMID: 24640988; http://dx. doi. org/10. 1021/ac500447w
-
(2014)
Anal Chem
, vol.86
, pp. 3697-3702
-
-
Capuano, F.1
Mulleder, M.2
Kok, R.3
Blom, H.J.4
Ralser, M.5
-
17
-
-
84888605243
-
Synthesis of DNA/RNA and their analogs via phosphoramidite and H-phosphonate chemistries
-
PMID: 24252996
-
Roy S, Caruthers M. Synthesis of DNA/RNA and their analogs via phosphoramidite and H-phosphonate chemistries. Molecules 2013; 18: 14268-84; PMID: 24252996; http://dx. doi. org/10. 3390/ molecules181114268
-
(2013)
Molecules
, vol.18
, pp. 14268-14284
-
-
Roy, S.1
Caruthers, M.2
-
19
-
-
84954542200
-
Preparation of 50-silyl-20-orthoester ribonucleosides for use in oligoribonucleotide synthesis
-
PMID: 18428924
-
Scaringe SA, Kitchen D, Kaiser RJ, Marshall WS. Preparation of 50-silyl-20-orthoester ribonucleosides for use in oligoribonucleotide synthesis. Methods Mol Biol 2005; 288: 33-50; PMID: 18428924
-
(2005)
Methods Mol Biol
, vol.288
, pp. 33-50
-
-
Scaringe, S.A.1
Kitchen, D.2
Kaiser, R.J.3
Marshall, W.S.4
-
20
-
-
0025683270
-
Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry
-
PMID: 1706062
-
Crain PF. Preparation and enzymatic hydrolysis of DNA and RNA for mass spectrometry. Methods Enzymol 1990; 193: 782-90; PMID: 1706062; http://dx. doi. org/10. 1016/0076-6879(90)93450-Y
-
(1990)
Methods Enzymol
, vol.193
, pp. 782-790
-
-
Crain, P.F.1
-
21
-
-
84879766748
-
Structure-function relationship of substituted bromomethylcoumarins in nucleoside specificity of RNA alkylation
-
PMID: 23844135
-
Kellner S, Kollar LB, Ochel A, Ghate M, Helm M. Structure-function relationship of substituted bromomethylcoumarins in nucleoside specificity of RNA alkylation. PloS one 2013; 8: e67945; PMID: 23844135; http://dx. doi. org/10. 1371/journal. pone. 0067945
-
(2013)
PloS one
, vol.8
-
-
Kellner, S.1
Kollar, L.B.2
Ochel, A.3
Ghate, M.4
Helm, M.5
-
22
-
-
0034619794
-
A Toll-like receptor recognizes bacterial DNA
-
PMID: 11130078
-
Hemmi H, Takeuchi O, Kawai T, Kaisho T, Sato S, Sanjo H, Matsumoto M, Hoshino K, Wagner H, Takeda K, et al. A Toll-like receptor recognizes bacterial DNA. Nature 2000; 408: 740-5; PMID: 11130078; http://dx. doi. org/10. 1038/35047123
-
(2000)
Nature
, vol.408
, pp. 740-745
-
-
Hemmi, H.1
Takeuchi, O.2
Kawai, T.3
Kaisho, T.4
Sato, S.5
Sanjo, H.6
Matsumoto, M.7
Hoshino, K.8
Wagner, H.9
Takeda, K.10
-
23
-
-
54949112814
-
Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability
-
PMID: 18797453
-
Kariko K, Muramatsu H, Welsh FA, Ludwig J, Kato H, Akira S, Weissman D. Incorporation of pseudouridine into mRNA yields superior nonimmunogenic vector with increased translational capacity and biological stability. Mol Ther 2008; 16: 1833-40; PMID: 18797453; http://dx. doi. org/10. 1038/ mt. 2008. 200
-
(2008)
Mol Ther
, vol.16
, pp. 1833-1840
-
-
Kariko, K.1
Muramatsu, H.2
Welsh, F.A.3
Ludwig, J.4
Kato, H.5
Akira, S.6
Weissman, D.7
-
24
-
-
84863496034
-
RNA mediated Toll-like receptor stimulation in health and disease
-
PMID: 22617878
-
Dalpke A, Helm M. RNA mediated Toll-like receptor stimulation in health and disease. RNA Biol 2012; 9: 828-42; PMID: 22617878; http://dx. doi. org/ 10. 4161/rna. 20206
-
(2012)
RNA Biol
, vol.9
, pp. 828-842
-
-
Dalpke, A.1
Helm, M.2
-
25
-
-
77950476036
-
Five-methylcytosine in RNA: Detection, enzymatic formation and biological functions
-
PMID: 20007150
-
Motorin Y, Lyko F, Helm M. Five-methylcytosine in RNA: detection, enzymatic formation and biological functions. Nucleic Acids Res 2010; 38: 1415-30; PMID: 20007150; http://dx. doi. org/10. 1093/nar/ gkp1117
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 1415-1430
-
-
Motorin, Y.1
Lyko, F.2
Helm, M.3
-
26
-
-
84866074106
-
RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
-
PMID: 22885326
-
Tuorto F, Liebers R, Musch T, Schaefer M, Hofmann S, Kellner S, Frye M, Helm M, Stoecklin G, Lyko F. RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat Struct Mol Biol 2012; 19: 900-5; PMID: 22885326; http://dx. doi. org/10. 1038/nsmb. 2357
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 900-905
-
-
Tuorto, F.1
Liebers, R.2
Musch, T.3
Schaefer, M.4
Hofmann, S.5
Kellner, S.6
Frye, M.7
Helm, M.8
Stoecklin, G.9
Lyko, F.10
-
27
-
-
84908153517
-
Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
-
PMID: 25063673
-
Blanco S, Dietmann S, Flores JV, Hussain S, Kutter C, Humphreys P, Lukk M, Lombard P, Treps L, Popis M, et al. Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders. EMBO J 2014; PMID: 25063673
-
(2014)
EMBO J
-
-
Blanco, S.1
Dietmann, S.2
Flores, J.V.3
Hussain, S.4
Kutter, C.5
Humphreys, P.6
Lukk, M.7
Lombard, P.8
Treps, L.9
Popis, M.10
-
28
-
-
77955884641
-
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
-
PMID: 20679393
-
Schaefer M, Pollex T, Hanna K, Tuorto F, Meusburger M, Helm M, Lyko F. RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev 2010; 24: 1590-5; PMID: 20679393; http:// dx. doi. org/10. 1101/gad. 586710
-
(2010)
Genes Dev
, vol.24
, pp. 1590-1595
-
-
Schaefer, M.1
Pollex, T.2
Hanna, K.3
Tuorto, F.4
Meusburger, M.5
Helm, M.6
Lyko, F.7
-
29
-
-
77955272219
-
Function of modified nucleosides in RNA stabilization
-
Grosjean H, Ed., Austin, TX: Landes Bioscience
-
Hayrapetyan A, Seidu-Larry S, Helm M. Function of modified nucleosides in RNA stabilization. In Grosjean H, Ed., DNA and RNA Modification Enzymes: Comparative Structure, Mechanism, Functions, Cellular Interactions and Evolution. Austin, TX: Landes Bioscience, 2006; pp. 550-9.
-
(2006)
DNA and RNA Modification Enzymes: Comparative Structure, Mechanism, Functions, Cellular Interactions and Evolution
, pp. 550-559
-
-
Hayrapetyan, A.1
Seidu-Larry, S.2
Helm, M.3
-
30
-
-
80955130871
-
RNA nucleotide methylation
-
PMID: 21823225
-
Motorin Y, Helm M. RNA nucleotide methylation. Wiley Interdiscip Rev RNA 2011; 2: 611-31; PMID: 21823225; http://dx. doi. org/10. 1002/wrna. 79
-
(2011)
Wiley Interdiscip Rev RNA
, vol.2
, pp. 611-631
-
-
Motorin, Y.1
Helm, M.2
-
31
-
-
78650826181
-
Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates
-
Dec 23
-
Globisch D, Münzel M, Müller M, Michalakis S, Wagner M, Koch S, Brückl T, Biel M, Carell T., Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates. PLoS One 2010 Dec 23; 5(12): e15367.
-
(2010)
PLoS One
, vol.5
, Issue.12
-
-
Globisch, D.1
Münzel, M.2
Müller, M.3
Michalakis, S.4
Wagner, M.5
Koch, S.6
Brückl, T.7
Biel, M.8
Carell, T.9
-
32
-
-
84906342396
-
Tet-mediated formation of 5-hydroxymethylcytosine in RNA
-
Aug 20
-
Fu L, Guerrero CR, Zhong N, Amato NJ, Liu Y, Liu S, Cai Q, Ji D, Jin SG, Niedernhofer LJ, Pfeifer GP, Xu GL, Wang Y. Tet-mediated formation of 5-hydroxymethylcytosine in RNA. J Am Chem Soc 2014 Aug 20; 136(33): 11582-5; http://dx. doi. org/10. 1021/ ja505305z
-
(2014)
J Am Chem Soc
, vol.136
, Issue.33
, pp. 11582-11585
-
-
Fu, L.1
Guerrero, C.R.2
Zhong, N.3
Amato, N.J.4
Liu, Y.5
Liu, S.6
Cai, Q.7
Ji, D.8
Jin, S.G.9
Niedernhofer, L.J.10
Pfeifer, G.P.11
Xu, G.L.12
Wang, Y.13
-
33
-
-
84898871225
-
Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species
-
Apr 15
-
Capuano F, Mülleder M, Kok R, Blom HJ, Ralser M. Cytosine DNA methylation is found in Drosophila melanogaster but absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and other yeast species. Anal Chem. 2014 Apr 15; 86(8): 3697-702; http://dx. doi. org/10. 1021/ac500447w
-
(2014)
Anal Chem
, vol.86
, Issue.8
, pp. 3697-3702
-
-
Capuano, F.1
Mülleder, M.2
Kok, R.3
Blom, H.J.4
Ralser, M.5
-
34
-
-
84924918523
-
Formation and abundance of 5-hydroxymethylcytosine in RNA
-
Mar 23
-
Huber SM, van Delft P, Mendil L, Bachman M, Smollett K, Werner F, Miska EA, Balasubramanian S. Formation and abundance of 5-hydroxymethylcytosine in RNA. Chembiochem 2015 Mar 23; 16(5): 752-5; http://dx. doi. org/10. 1002/cbic. 201500013
-
(2015)
Chembiochem
, vol.16
, Issue.5
, pp. 752-755
-
-
Huber, S.M.1
van Delft, P.2
Mendil, L.3
Bachman, M.4
Smollett, K.5
Werner, F.6
Miska, E.A.7
Balasubramanian, S.8
-
35
-
-
84936858061
-
Intermolecular 'cross-torque': The N4-cytosine propargyl residue is rotated to the 'CH'-edge as a result of Watson-Crick interaction
-
Jun 23
-
Domingo O, Hellmuth I, Jäschke A, Kreutz C, Helm M. Intermolecular 'cross-torque': the N4-cytosine propargyl residue is rotated to the 'CH'-edge as a result of Watson-Crick interaction. Nucleic Acids Res 2015 Jun 23; 43(11): 5275-83.
-
(2015)
Nucleic Acids Res
, vol.43
, Issue.11
, pp. 5275-5283
-
-
Domingo, O.1
Hellmuth, I.2
Jäschke, A.3
Kreutz, C.4
Helm, M.5
|