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Volumn 26, Issue 1, 2016, Pages 13-26

A quantitative transcriptome reference map of the normal human hippocampus

Author keywords

Human chromosome 21; Human hippocampus; Meta analysis; Real time RT PCR; Transcriptome map

Indexed keywords

LONG UNTRANSLATED RNA; TRANSCRIPTOME; TUBULIN; TUBULIN FOLDING COFACTOR B; UNCLASSIFIED DRUG;

EID: 84954339116     PISSN: 10509631     EISSN: 10981063     Source Type: Journal    
DOI: 10.1002/hipo.22483     Document Type: Article
Times cited : (16)

References (57)
  • 1
    • 84910597319 scopus 로고    scopus 로고
    • Nervous and immune systems signals and connections: Cytokines in hippocampus physiology and pathology
    • Arisi GM. 2014. Nervous and immune systems signals and connections: Cytokines in hippocampus physiology and pathology. Epilepsy Behav 38C:43-47.
    • (2014) Epilepsy Behav , vol.38C , pp. 43-47
    • Arisi, G.M.1
  • 3
    • 33747884345 scopus 로고    scopus 로고
    • Gene expression omnibus: microarray data storage, submission, retrieval, and analysis
    • Barrett T, Edgar R. 2006. Gene expression omnibus: microarray data storage, submission, retrieval, and analysis. Methods Enzymol 411:352-369.
    • (2006) Methods Enzymol , vol.411 , pp. 352-369
    • Barrett, T.1    Edgar, R.2
  • 4
    • 80051768234 scopus 로고    scopus 로고
    • Is it possible to improve neurodevelopmental abnormalities in Down syndrome?
    • Bartesaghi R, Guidi S, Ciani E. 2011. Is it possible to improve neurodevelopmental abnormalities in Down syndrome? Rev Neurosci 22:419-455.
    • (2011) Rev Neurosci , vol.22 , pp. 419-455
    • Bartesaghi, R.1    Guidi, S.2    Ciani, E.3
  • 5
    • 0029670869 scopus 로고    scopus 로고
    • C-terminal fragments of alpha- and beta-tubulin form amyloid fibrils in vitro and associate with amyloid deposits of familial cerebral amyloid angiopathy, British type
    • Baumann MH, Wisniewski T, Levy E, Plant GT, Ghiso J. 1996. C-terminal fragments of alpha- and beta-tubulin form amyloid fibrils in vitro and associate with amyloid deposits of familial cerebral amyloid angiopathy, British type. Biochem Biophys Res Commun 219:238-242.
    • (1996) Biochem Biophys Res Commun , vol.219 , pp. 238-242
    • Baumann, M.H.1    Wisniewski, T.2    Levy, E.3    Plant, G.T.4    Ghiso, J.5
  • 7
    • 0035931097 scopus 로고    scopus 로고
    • Further defining housekeeping, or "maintenance," genes Focus on "A compendium of gene expression in normal human tissues"
    • Butte AJ, Dzau VJ, Glueck SB. 2001. Further defining housekeeping, or "maintenance, " genes Focus on "A compendium of gene expression in normal human tissues". Physiol Genomics 7:95-96.
    • (2001) Physiol Genomics , vol.7 , pp. 95-96
    • Butte, A.J.1    Dzau, V.J.2    Glueck, S.B.3
  • 9
    • 0031060636 scopus 로고    scopus 로고
    • Long-term memory in mental retardation: Evidence for a specific impairment in subjects with Down's syndrome
    • Carlesimo GA, Marotta L, Vicari S. 1997. Long-term memory in mental retardation: Evidence for a specific impairment in subjects with Down's syndrome. Neuropsychologia 35:71-79.
    • (1997) Neuropsychologia , vol.35 , pp. 71-79
    • Carlesimo, G.A.1    Marotta, L.2    Vicari, S.3
  • 11
    • 67849130563 scopus 로고    scopus 로고
    • ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
    • Chen J, Bardes EE, Aronow BJ, Jegga AG. 2009. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 37:W305-W311.
    • (2009) Nucleic Acids Res , vol.37 , pp. W305-W311
    • Chen, J.1    Bardes, E.E.2    Aronow, B.J.3    Jegga, A.G.4
  • 12
    • 84921632886 scopus 로고    scopus 로고
    • Insights into RNA transcriptome profiling of cardiac tissue in obesity and hypertension conditions
    • Costa A, Franco OL. 2015. Insights into RNA transcriptome profiling of cardiac tissue in obesity and hypertension conditions. J Cell Physiol 230:959-968.
    • (2015) J Cell Physiol , vol.230 , pp. 959-968
    • Costa, A.1    Franco, O.L.2
  • 13
    • 11144259374 scopus 로고    scopus 로고
    • Reduction of hippocampal collapsin response mediated protein-2 in patients with mesial temporal lobe epilepsy
    • Czech T, Yang JW, Csaszar E, Kappler J, Baumgartner C, Lubec G. 2004. Reduction of hippocampal collapsin response mediated protein-2 in patients with mesial temporal lobe epilepsy. Neurochem Res 29:2189-2196.
    • (2004) Neurochem Res , vol.29 , pp. 2189-2196
    • Czech, T.1    Yang, J.W.2    Csaszar, E.3    Kappler, J.4    Baumgartner, C.5    Lubec, G.6
  • 14
    • 67651036860 scopus 로고    scopus 로고
    • Aneuploidy: From a physiological mechanism of variance to Down syndrome
    • Dierssen M, Herault Y, Estivill X. 2009. Aneuploidy: From a physiological mechanism of variance to Down syndrome. Physiol Rev 89:887-920.
    • (2009) Physiol Rev , vol.89 , pp. 887-920
    • Dierssen, M.1    Herault, Y.2    Estivill, X.3
  • 16
    • 0027491210 scopus 로고
    • Contributing software to the internet: The Amplify program
    • Engels WR. 1993. Contributing software to the internet: The Amplify program. Trends Biochem Sci 18:448-450.
    • (1993) Trends Biochem Sci , vol.18 , pp. 448-450
    • Engels, W.R.1
  • 18
    • 58149512060 scopus 로고    scopus 로고
    • Tubulin cofactor B regulates microtubule densities during microglia transition to the reactive states
    • Fanarraga ML, Villegas JC, Carranza G, Castaño R, Zabala JC. 2009. Tubulin cofactor B regulates microtubule densities during microglia transition to the reactive states. Exp Cell Res 315:535-541.
    • (2009) Exp Cell Res , vol.315 , pp. 535-541
    • Fanarraga, M.L.1    Villegas, J.C.2    Carranza, G.3    Castaño, R.4    Zabala, J.C.5
  • 19
    • 84882692468 scopus 로고    scopus 로고
    • Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data
    • Guo Y, Sheng Q, Li J, Ye F, Samuels DC, Shyr Y. 2013. Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data. PLoS One 8:e71462.
    • (2013) PLoS One , vol.8 , pp. e71462
    • Guo, Y.1    Sheng, Q.2    Li, J.3    Ye, F.4    Samuels, D.C.5    Shyr, Y.6
  • 20
    • 84856508563 scopus 로고    scopus 로고
    • Trisomy 21 and early brain development
    • Haydar TF, Reeves RH. 2012. Trisomy 21 and early brain development. Trends Neurosci 35:81-91.
    • (2012) Trends Neurosci , vol.35 , pp. 81-91
    • Haydar, T.F.1    Reeves, R.H.2
  • 23
    • 2042479398 scopus 로고    scopus 로고
    • Molecular characterization of bipolar disorder by comparing gene expression profiles of postmortem brains of major mental disorders
    • Iwamoto K, Kakiuchi C, Bundo M, Ikeda K, Kato T. 2004. Molecular characterization of bipolar disorder by comparing gene expression profiles of postmortem brains of major mental disorders. Mol Psychiatry 9:406-416.
    • (2004) Mol Psychiatry , vol.9 , pp. 406-416
    • Iwamoto, K.1    Kakiuchi, C.2    Bundo, M.3    Ikeda, K.4    Kato, T.5
  • 24
    • 0002044144 scopus 로고    scopus 로고
    • Learning and Memory
    • In: Kandel ER, Schwartz JH and Jessell TM, editors. 4th edition. New York: McGraw Hill
    • Kandel ER, Kupfermann I, Iversen S. 2000. Learning and Memory. In: Kandel ER, Schwartz JH and Jessell TM, editors. Principle of Neural Science. 4th edition. New York: McGraw Hill. p 1227-1246.
    • (2000) Principle of Neural Science , pp. 1227-1246
    • Kandel, E.R.1    Kupfermann, I.2    Iversen, S.3
  • 26
    • 33644788009 scopus 로고    scopus 로고
    • Postsynaptic recruitment of Dendrin depends on both dendritic mRNA transport and synaptic anchoring
    • Kremerskothen J, Kindler S, Finger I, Veltel S, Barnekow A. 2006. Postsynaptic recruitment of Dendrin depends on both dendritic mRNA transport and synaptic anchoring. J Neurochem 96:1659-1666.
    • (2006) J Neurochem , vol.96 , pp. 1659-1666
    • Kremerskothen, J.1    Kindler, S.2    Finger, I.3    Veltel, S.4    Barnekow, A.5
  • 29
    • 84954332430 scopus 로고
    • Research on pathogeny of mental retardation in trisomy 21. Working group on: "Aspects of the uses of genetic engineering"
    • Pontificia Academia Scientiarum, Rome, Italy.
    • Lejeune J. 1988. Research on pathogeny of mental retardation in trisomy 21. Working group on: "Aspects of the uses of genetic engineering". Commentarii Vol. III N° 31. Pontificia Academia Scientiarum, Rome, Italy.
    • (1988) Commentarii , vol.3 , Issue.31
    • Lejeune, J.1
  • 32
    • 84860324473 scopus 로고    scopus 로고
    • Genomic determinants in the phenotypic variability of Down syndrome
    • Letourneau A, Antonarakis SE. 2012. Genomic determinants in the phenotypic variability of Down syndrome. Prog Brain Res 197:15-28.
    • (2012) Prog Brain Res , vol.197 , pp. 15-28
    • Letourneau, A.1    Antonarakis, S.E.2
  • 34
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method
    • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 36
    • 79957665988 scopus 로고    scopus 로고
    • Microarrays, deep sequencing and the true measure of the transcriptome
    • Malone JH, Oliver B. 2011. Microarrays, deep sequencing and the true measure of the transcriptome. BMC Biol 9:34.
    • (2011) BMC Biol , vol.9 , pp. 34
    • Malone, J.H.1    Oliver, B.2
  • 37
    • 34547110396 scopus 로고    scopus 로고
    • BEX2 is over-expressed in a subset of primary breast cancers and mediates nerve growth factor/nuclear factor-kappaB inhibition of apoptosis in breast cancer cell lines
    • Naderi A, Teschendorff AE, Beigel J, Cariati M, Ellis IO, Brenton JD, Caldas C. 2007. BEX2 is over-expressed in a subset of primary breast cancers and mediates nerve growth factor/nuclear factor-kappaB inhibition of apoptosis in breast cancer cell lines. Cancer Res 67:6725-6736.
    • (2007) Cancer Res , vol.67 , pp. 6725-6736
    • Naderi, A.1    Teschendorff, A.E.2    Beigel, J.3    Cariati, M.4    Ellis, I.O.5    Brenton, J.D.6    Caldas, C.7
  • 39
    • 0346789073 scopus 로고    scopus 로고
    • Detailed mapping of the ERG-ETS2 interval of human chromosome 21 and comparison with the region of conserved synteny on mouse chromosome 16
    • Owczarek CM, Portbury KJ, Hardy MP, O'Leary DA, Kudoh J, Shibuya K, Shimizu N, Kola I, Hertzog PJ. 2004. Detailed mapping of the ERG-ETS2 interval of human chromosome 21 and comparison with the region of conserved synteny on mouse chromosome 16. Gene 324:65-77.
    • (2004) Gene , vol.324 , pp. 65-77
    • Owczarek, C.M.1    Portbury, K.J.2    Hardy, M.P.3    O'Leary, D.A.4    Kudoh, J.5    Shibuya, K.6    Shimizu, N.7    Kola, I.8    Hertzog, P.J.9
  • 40
    • 84964312644 scopus 로고    scopus 로고
    • Integrated differential transcriptome maps of acute megakaryoblastic leukemia (AMKL) in children with or without Down Syndrome (DS)
    • Pelleri MC, Piovesan A, Caracausi M, Berardi AC, Vitale L, Strippoli P. 2014. Integrated differential transcriptome maps of acute megakaryoblastic leukemia (AMKL) in children with or without Down Syndrome (DS). BMC Med Genomics 7:63.
    • (2014) BMC Med Genomics , vol.7 , pp. 63
    • Pelleri, M.C.1    Piovesan, A.2    Caracausi, M.3    Berardi, A.C.4    Vitale, L.5    Strippoli, P.6
  • 41
    • 84876406714 scopus 로고    scopus 로고
    • Universal tight correlation of codon bias and pool of RNA codons (codonome): The genome is optimized to allow any distribution of gene expression values in the transcriptome from bacteria to humans
    • Piovesan A, Vitale L, Pelleri MC, Strippoli P. 2013. Universal tight correlation of codon bias and pool of RNA codons (codonome): The genome is optimized to allow any distribution of gene expression values in the transcriptome from bacteria to humans. Genomics 101:282-289.
    • (2013) Genomics , vol.101 , pp. 282-289
    • Piovesan, A.1    Vitale, L.2    Pelleri, M.C.3    Strippoli, P.4
  • 45
    • 0037373239 scopus 로고    scopus 로고
    • 3-[2-[4-(3-Chloro-2-methylphenyl)-1-piperazinyl]ethyl]-5,6-dimethoxy-1-(4-imidazolylmethyl)-1H-indazole dihydrochloride 3.5 hydrate (DY-9760e), a novel calmodulin antagonist, reduces brain edema through the inhibition of enhanced blood-brain barrier permeability after transient focal ischemia
    • Sato T, Morishima Y, Shirasaki Y. 2003. 3-[2-[4-(3-Chloro-2-methylphenyl)-1-piperazinyl]ethyl]-5, 6-dimethoxy-1-(4-imidazolylmethyl)-1H-indazole dihydrochloride 3.5 hydrate (DY-9760e), a novel calmodulin antagonist, reduces brain edema through the inhibition of enhanced blood-brain barrier permeability after transient focal ischemia. J Pharmacol Exp Ther 304:1042-1047.
    • (2003) J Pharmacol Exp Ther , vol.304 , pp. 1042-1047
    • Sato, T.1    Morishima, Y.2    Shirasaki, Y.3
  • 46
    • 0002053819 scopus 로고
    • The design of primer for PCR
    • In: Griffin HG, Griffin AM, editors. . Boca Raton, FL: CRC Press
    • Sharrocks AD. 1994. The design of primer for PCR. In: Griffin HG, Griffin AM, editors. PCR Technology-Current Innovations. Boca Raton, FL: CRC Press. pp 5-11.
    • (1994) PCR Technology-Current Innovations , pp. 5-11
    • Sharrocks, A.D.1
  • 51
    • 0030891238 scopus 로고    scopus 로고
    • Calmodulin in ischemic neurotoxicity of rat hippocampus in vitro
    • Sun X, Shin C, Windebank AJ. 1997. Calmodulin in ischemic neurotoxicity of rat hippocampus in vitro. NeuroReport 8:415-418.
    • (1997) NeuroReport , vol.8 , pp. 415-418
    • Sun, X.1    Shin, C.2    Windebank, A.J.3
  • 52
    • 84888367236 scopus 로고    scopus 로고
    • Widespread sex differences in gene expression and splicing in the adult human brain
    • North American Brain Expression Consortium
    • Trabzuni D, Ramasamy A, Imran S, Walker R, Smith C, Weale ME, Hardy J, Ryten M; North American Brain Expression Consortium 2013. Widespread sex differences in gene expression and splicing in the adult human brain. Nat Commun 4:2771.
    • (2013) Nat Commun , vol.4 , pp. 2771
    • Trabzuni, D.1    Ramasamy, A.2    Imran, S.3    Walker, R.4    Smith, C.5    Weale, M.E.6    Hardy, J.7    Ryten, M.8
  • 53
    • 33644897576 scopus 로고    scopus 로고
    • Further understanding human disease genes by comparing with housekeeping genes and other genes
    • Tu Z, Wang L, Xu M, Zhou X, Chen T, Sun F. 2006. Further understanding human disease genes by comparing with housekeeping genes and other genes. BMC Genomics 7:31.
    • (2006) BMC Genomics , vol.7 , pp. 31
    • Tu, Z.1    Wang, L.2    Xu, M.3    Zhou, X.4    Chen, T.5    Sun, F.6
  • 56
    • 84879437081 scopus 로고    scopus 로고
    • Transcriptome meta-analysis reveals a central role for sex steroids in the degeneration of hippocampal neurons in Alzheimer's disease
    • Winkler JM, Fox HS. 2013. Transcriptome meta-analysis reveals a central role for sex steroids in the degeneration of hippocampal neurons in Alzheimer's disease. BMC Syst Biol 7:51.
    • (2013) BMC Syst Biol , vol.7 , pp. 51
    • Winkler, J.M.1    Fox, H.S.2
  • 57
    • 84898618335 scopus 로고    scopus 로고
    • Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells
    • Zhao S, Fung-Leung WP, Bittner A, Ngo K, Liu X. 2014. Comparison of RNA-Seq and microarray in transcriptome profiling of activated T cells. PLoS One 9:e78644.
    • (2014) PLoS One , vol.9 , pp. e78644
    • Zhao, S.1    Fung-Leung, W.P.2    Bittner, A.3    Ngo, K.4    Liu, X.5


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