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Volumn 107, Issue 5, 2016, Pages 199-207

Evolution of DUF1313 family members across plant species and their association with maize photoperiod sensitivity

Author keywords

Association analysis; DUF1313 family; Maize; Phylogenetic analysis; Selection pressure

Indexed keywords

5' UNTRANSLATED REGION; AMINO ACID SUBSTITUTION; ARTICLE; CLADISTICS; CONTROLLED STUDY; DUF1313 GENE; ELF4 GENE; ELF4 LIKE1 GENE; ELF4 LIKE2 GENE; ELF4 LIKE3 GENE; ELF4 LIKE4 GENE; GENE DUPLICATION; GENE FREQUENCY; GENE IDENTIFICATION; GENETIC ASSOCIATION; GENETIC CONSERVATION; GENETIC SELECTION; GENETIC SIMILARITY; MAIZE; NONHUMAN; PHOTOPERIODICITY; PHYLOGENETIC TREE; PLANT; PLANT BREEDING; PLANT EVOLUTION; PLANT GENE; PLANT HEIGHT; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIFFERENCE; SPECIES DIVERSITY; TEOSINTE; TRIPSACUM; BIOSYNTHESIS; BREEDING; GENE EXPRESSION REGULATION; GENETIC VARIATION; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; MULTIGENE FAMILY; PHYLOGENY;

EID: 84954306022     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2016.01.003     Document Type: Article
Times cited : (13)

References (30)
  • 1
    • 37049223945 scopus 로고
    • A genetic view of sex expression in the flowering plants
    • Emerson R. A genetic view of sex expression in the flowering plants. Science 1924, 59:176-182.
    • (1924) Science , vol.59 , pp. 176-182
    • Emerson, R.1
  • 4
    • 84903362477 scopus 로고    scopus 로고
    • Protein domains of unknown function are essential in bacteria
    • (e00744-00713-e00744-00713)
    • Goodacre N.F., Gerloff D.L., Uetz P. Protein domains of unknown function are essential in bacteria. mBio 2013, 5. (e00744-00713-e00744-00713).
    • (2013) mBio , vol.5
    • Goodacre, N.F.1    Gerloff, D.L.2    Uetz, P.3
  • 7
    • 77953380723 scopus 로고    scopus 로고
    • Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?
    • Holm K., Källman T., Gyllenstrand N., Hedman H., Lagercrantz U. Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?. BMC Plant Biol. 2010, 10:109.
    • (2010) BMC Plant Biol. , vol.10 , pp. 109
    • Holm, K.1    Källman, T.2    Gyllenstrand, N.3    Hedman, H.4    Lagercrantz, U.5
  • 8
    • 0346422328 scopus 로고    scopus 로고
    • EARLY FLOWERING 4 functions in phytochrome b-regulated seedling de-etiolation
    • Khanna R. EARLY FLOWERING 4 functions in phytochrome b-regulated seedling de-etiolation. Plant Physiol. 2003, 133:1530-1538.
    • (2003) Plant Physiol. , vol.133 , pp. 1530-1538
    • Khanna, R.1
  • 10
    • 14544289422 scopus 로고    scopus 로고
    • Dissection of maize kernel composition and starch production by candidate gene association
    • Wilson L.M. Dissection of maize kernel composition and starch production by candidate gene association. Plant Cell Online 2004, 16:2719-2733.
    • (2004) Plant Cell Online , vol.16 , pp. 2719-2733
    • Wilson, L.M.1
  • 11
    • 84884678620 scopus 로고    scopus 로고
    • Genome-wide analysis of ZmDREB genes and their association with natural variation in drought tolerance at seedling stage of Zea mays L
    • Liu S., Wang X., Wang H., Xin H., Yang X., Yan J., Li J., Tran L.S., Shinozaki K., Yamaguchi-Shinozaki K., Qin F. Genome-wide analysis of ZmDREB genes and their association with natural variation in drought tolerance at seedling stage of Zea mays L. PLoS Genet. 2013, 9:e1003790.
    • (2013) PLoS Genet. , vol.9 , pp. e1003790
    • Liu, S.1    Wang, X.2    Wang, H.3    Xin, H.4    Yang, X.5    Yan, J.6    Li, J.7    Tran, L.S.8    Shinozaki, K.9    Yamaguchi-Shinozaki, K.10    Qin, F.11
  • 14
    • 84871996129 scopus 로고    scopus 로고
    • Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels
    • Li H., Peng Z., Yang X., Wang W., Fu J., Wang J., Han Y., Chai Y., Guo T., Yang N. Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nat. Genet. 2013, 45:43-50.
    • (2013) Nat. Genet. , vol.45 , pp. 43-50
    • Li, H.1    Peng, Z.2    Yang, X.3    Wang, W.4    Fu, J.5    Wang, J.6    Han, Y.7    Chai, Y.8    Guo, T.9    Yang, N.10
  • 15
    • 84907578015 scopus 로고    scopus 로고
    • Genome wide association studies using a new nonparametric model reveal the genetic architecture of 17 agronomic traits in an enlarged maize association panel
    • Yang N., Lu Y., Yang X., Huang J., Zhou Y., Ali F., Wen W., Liu J., Li J., Yan J. Genome wide association studies using a new nonparametric model reveal the genetic architecture of 17 agronomic traits in an enlarged maize association panel. PLoS Genet. 2014, 10:e1004573.
    • (2014) PLoS Genet. , vol.10 , pp. e1004573
    • Yang, N.1    Lu, Y.2    Yang, X.3    Huang, J.4    Zhou, Y.5    Ali, F.6    Wen, W.7    Liu, J.8    Li, J.9    Yan, J.10
  • 16
    • 38549135938 scopus 로고    scopus 로고
    • Alignment uncertainty and genomic analysis
    • Wong K.M., Suchard M.A., Huelsenbeck J.P. Alignment uncertainty and genomic analysis. Science 2008, 319:473-476.
    • (2008) Science , vol.319 , pp. 473-476
    • Wong, K.M.1    Suchard, M.A.2    Huelsenbeck, J.P.3
  • 17
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 18
    • 79954529507 scopus 로고    scopus 로고
    • ProtTest 3: fast selection of best-fit models of protein evolution
    • Darriba D., Taboada G.L., Doallo R., Posada D. ProtTest 3: fast selection of best-fit models of protein evolution. Bioinformatics 2011, 27:1164-1165.
    • (2011) Bioinformatics , vol.27 , pp. 1164-1165
    • Darriba, D.1    Taboada, G.L.2    Doallo, R.3    Posada, D.4
  • 19
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S., Dufayard J.-F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.-F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 20
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 22
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 2007, 24:1586-1591.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 23
    • 33645981936 scopus 로고    scopus 로고
    • A hybrid micro-macroevolutionary approach to gene tree reconstruction
    • Durand D., Halldórsson B.V., Vernot B. A hybrid micro-macroevolutionary approach to gene tree reconstruction. J. Comput. Biol. 2006, 13:320-335.
    • (2006) J. Comput. Biol. , vol.13 , pp. 320-335
    • Durand, D.1    Halldórsson, B.V.2    Vernot, B.3
  • 25
    • 84910655736 scopus 로고    scopus 로고
    • HemI: a toolkit for illustrating heatmaps
    • Deng W., Wang Y., Liu Z., Cheng H., Xue Y. HemI: a toolkit for illustrating heatmaps. PLoS One 2014, 9:e111988.
    • (2014) PLoS One , vol.9 , pp. e111988
    • Deng, W.1    Wang, Y.2    Liu, Z.3    Cheng, H.4    Xue, Y.5
  • 26
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 27
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang Z., Bielawski J.P. Statistical methods for detecting molecular adaptation. Trends Ecol. Evol. 2000, 15:496-503.
    • (2000) Trends Ecol. Evol. , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 29
    • 0001720842 scopus 로고
    • Taxonomy of Zea (Gramineae). I. A subgeneric classification with key to taxa
    • Doebley J.F., Iltis H.H. Taxonomy of Zea (Gramineae). I. A subgeneric classification with key to taxa. Am. J. Bot. 1980, 67:982-993.
    • (1980) Am. J. Bot. , vol.67 , pp. 982-993
    • Doebley, J.F.1    Iltis, H.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.