DIE NEUTRALIS and LATE BLOOMER 1 contribute to regulation of the pea circadian clock

Plant Cell

Volumn 21, Issue 10, 2009, Pages 3198-3211

  Liew, Lim Chee ^a   Hecht, Valérie ^a   Laurie, Rebecca E ^b   Knowles, Claire L ^a   Vander Schoor, Jacqueline K ^a   Macknight, Richard C ^b   Weller, James L ^a  

^a UNIVERSITY OF TASMANIA   (Australia)

^b UNIVERSITY OF OTAGO   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; PISUM SATIVUM;

EID: 72049089546     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.109.067223     Document Type: Article

References (74)

1. Alabadi, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Mas, P., and Kay, S.A. (2001). Reciprocal regulation between TOC1 and LHY/ CCA1 within the Arabidopsis circadian clock. Science 293: 880-883.
2. Allen, T., Koustenis, A., Theodorou, G., Somers, D.E., Kay, S.A., Whitelam, G.C., and Devlin, P.F. (2006). Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock. Plant Cell 18: 2506-2516. (Pubitemid 44749886)
3. Böhlenius, H., Huang, T., Charbonnel-Campaa, L., Brunner, A.M., Jansson, S., Strauss, S.H., and Nilsson, O. (2006). CO/FT regulatory module controls timing of flowering and seasonal growth cessation in trees. Science 312: 1040-1043. (Pubitemid 43752911)
4. Covington, M.F., Panda, S., Liu, X.L., Strayer, C.A., Wagner, D.R., and Kay, S.A. (2001). ELF3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell 13: 1305-1315. (Pubitemid 32592905)
5. Dalmais, M., Schmidt, J., Le Signor, C., Moussy, F., Burstin, J., Savois, V., Aubert, G., Brunaud, V., de Oliveira, Y., Guichard, C., Thompson, R., and Bendahmane, A. (2008). UTILLdb, a Pisum sativum in silico forward and reverse genetics tool. Genome Biol. 9: R43.
6. Danilevskaya, O.N., Meng, X., Hou, Z., Ananiev, E.V., and Simmons, C.R. (2008). A genomic and expression compendium of the expanded PEBP gene family from maize. Plant Physiol. 146: 250-264.
7. Ding, Z., Millar, A.J., Davis, A.M., and Davis, S.J. (2007). TIME FOR COFFEE encodes a nuclear regulator in the Arabidopsis thaliana circadian clock. Plant Cell 19: 1522-1536.
8. Doi, K., Izawa, T., Fuse, T., Yamanouchi, U., Kubo, T., Shimatani, Z., Yano, M., and Yoshimura, A. (2004). Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev. 18: 926-936. (Pubitemid 38529661)
9. Dowson-Day, M.J., and Millar, A.J. (1999). Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant J. 17: 63-71. (Pubitemid 129517866)
10. Doyle, M.R., Davis, S.J., Bastow, R.M., McWatters, H.G., KozmaBognar, L., Nagy, F., Millar, A.J., and Amasino, R.M. (2002). The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature 419: 74-77.
11. Faure, S., Higgins, J., Turner, A., and Laurie, D.A. (2007). The FLOWERING LOCUS T-Like gene family in barley (Hordeum vulgare). Genetics 176: 599-609.
12. Fowler, S., Lee, K., Onouchi, H., Samach, A., Richardson, K., Morris, B., Coupland, G., and Putterill, J. (1999). GIGANTEA: A circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membranespanning domains. EMBO J. 18: 4679-4688. (Pubitemid 29415522)
13. Fujiwara, S., Oda, A., Yoshida, R., Niinuma, K., Miyata, K., Tomozoe, Y., Tajima, T., Nakagawa, M., Hayashi, K., Coupland, G., and Mizoguchi, T. (2008). Circadian clock proteins LHY and CCA1 regulate SVP protein accumulation to control flowering in Arabidopsis. Plant Cell 20: 2960-2971.
14. Gardner, M.J., Hubbard, K.E., Hotta, C.T., Dodd, A.N., and Webb, A.A. (2006). How plants tell the time. Biochem. J. 397: 15-24.
15. Gould, P.D., Locke, J.C.W., Larue, C., Southern, M.M., Davis, S.J., Hanano, S., Moyle, R., Milich, R., Putterill, J., Millar, A.J., and Hall, A. (2006). The molecular basis of temperature compensation in the Arabidopsis circadian clock. Plant Cell 18: 1177-1187.
16. Hall, A., Bastow, R.M., Davis, S.J., Hanano, S., McWatters, H.G., Hibberd, V., Doyle, M.R., Sung, S., Halliday, K.J., Amasino, R.M., and Millar, A.J. (2003). The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell 15: 2719-2729.
17. Hall, K.J., Parker, J.S., Ellis, T.H., Turner, L., Knox, M.R., Hofer, J.M., Lu, J., Ferrandiz, C., Hunter, P.J., Taylor, J.D., and Baird, K. (1997). The relationship between genetic and cytogenetic maps of pea. II. Physical maps of linkage mapping populations. Genome 40: 755-769.
18. Hayama, R., Agashe, B., Luley, E., King, R., and Coupland, G. (2007). A circadian rhythm set by dusk determines the expression of FT homologs and the short-day photoperiodic flowering response in Pharbitis. Plant Cell 19: 2988-3000. (Pubitemid 350276707)
19. Hayama, R., and Coupland, G. (2004). The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice. Plant Physiol. 135: 677-684. (Pubitemid 38819013)
20. Hazen, S.P., Schultz, T.F., Pruneda-Paz, J.L., Borevitz, J.O., Ecker, J.R., and Kay, S.A. (2005). LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc. Natl. Acad. Sci. USA 102: 10387-10392.
21. Hecht, V., Foucher, F., Ferrandiz, C., Macknight, R., Navarro, C., Morin, J., Vardy, M.E., Ellis, N., Beltran, J.P., Rameau, C., and Weller, J.L. (2005). Conservation of Arabidopsis flowering genes in model legumes. Plant Physiol. 137: 1420-1434. (Pubitemid 43119339)
22. Hecht, V., Knowles, C.L., Vander Schoor, J.K., Liew, L.C., Jones, S. E., Lambert, M.J.M., and Weller, J.L. (2007). Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs. Plant Physiol. 144: 648-661.
23. Hicks, K.A., Millar, A.J., Carre, I.A., Somers, D.E., Straume, M., Meeks-Wagner, D.R., and Kay, S.A. (1996). Conditional circadian dysfunction of the Arabidopsis early-flowering 3 mutant. Science 274: 790-792. (Pubitemid 26398261)
24. Igasaki, T., Watanabe, Y., Nishiguchi, M., and Kotoda, N. (2008). The FLOWERING LOCUS TITERMtNAL FLOWER 1 family in Lombardy Poplar. Plant Cell Physiol. 49: 291-300.
25. Imaizumi, T., and Kay, S.A. (2006). Photoperiodic control of flowering: Not only by coincidence. Trends Plant Sci. 11: 550-558. (Pubitemid 44636297)
26. Izawa, T., Oikawa, T., Sugiyama, N., Tanisaka, T., Yano, M., and Shimamoto, K. (2002). Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice. Genes Dev. 16: 2006-2020. (Pubitemid 34832927)
27. Jung, J.-H., Seo, Y.-H., Seo, P.J., Reyes, J.L., Yun, J., Chua, N.-H., and Park, C.-M. (2007). The GIGANTEA-regulated microRNA172 mediates photoperiodic flowering independent of CONSTANS in Arabidopsis. Plant Cell 19: 2736-2748. (Pubitemid 350046225)
28. Kaldis, A.D., and Prombona, A. (2006). Synergy between the lightinduced acute response and the circadian cycle: A new mechanism for the synchronization of the Phaseolus vulgaris clock to light. Plant Mol. Biol. 61: 883-895.
29. TM vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 7: 193-195.
30. Khanna, R., Kikis, E.A., and Quail, P.H. (2003). EARLY FLOWERING 4 functions in phytochrome B-regulated seedling de-etiolation. Plant Physiol. 133: 1530-1538. (Pubitemid 38047285)
31. Kikis, E.A., Khanna, R., and Quail, P.H. (2005). ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY. Plant J. 44: 300-313. (Pubitemid 43919889)
32. Kim, W.-Y., Fujiwara, S., Suh, S.-S., Kim, J., Kim, Y., Han, L., David, K., Putterill, J., Nam, H.G., and Somers, D.E. (2007). ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light. Nature 449: 356-362. (Pubitemid 47443478)
33. Kim, W.-Y., Hicks, K.A., and Somers, D.E. (2005). Independent roles for EARLY FLOWERING 3 and ZEITLUPE in the control of circadian timing, hypocotyl length, and flowering time. Plant Physiol. 139: 1557-1569.
34. King, W.M., and Murfet, I.C. (1985). Flowering in Pisum: A sixth locus, Dne. Ann. Bot. (Lond.) 56: 835-846.
35. Kobayashi, Y., and Weigel, D. (2007). Move on up, it's time for change-Mobile signals controlling photoperiod-dependent flowering. Genes Dev. 21: 2371-2384. (Pubitemid 47529368)
36. Kojima, S., Takahashi, Y., Kobayashi, Y., Monna, L., Sasaki, T., Araki, T., and Yano, M. (2002). Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol. 43: 1096-1105. (Pubitemid 35337204)
37. Lejeune-Hénaut, I., et al. (2008). The flowering locus Hr colocalizes with a major QTL affecting winter frost tolerance in Pisum sativum L. Theor. Appl. Genet. 116: 1105-1116.
38. Lester, D.R., Ross, J.J., Davies, P.J., and Reid, J.B. (1997). Mendels stem length gene (Le) encodes a gibberellin 3B-hydroxylase. Plant Cell 9: 1435-1443.
39. Li, C., and Dubcovsky, J. (2008). Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J. 55: 543-554.
40. Locke, J.C., Kozma-Bognar, L., Gould, P.D., Feher, B., Kevei, E., Nagy, F., Turner, M.S., Hall, A., and Millar, A.J. (2006). Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Mol. Syst. Biol. 2: 59. (Pubitemid 46061077)
41. Locke, J.C, Southern, M.M., Kozma-Bognar, L., Hibberd, V., Brown, P.E., Turner, M.S., and Millar, A.J. (2005). Extension of a genetic network model by iterative experimentation and mathematical analysis. Mol. Syst. Biol. 1: 2005.0013.
42. Matsushika, A., Makino, S., Kojima, M., and Mizuno, T. (2000). Circadian waves of expression of the APRR1/TOC1 family of pseudoresponse regulators in Arabidopsis thaliana: Insight into the plant circadian clock. Plant Cell Physiol. 41: 1002-1012.
43. McClung, C.R. (2008). Comes a time. Curr. Opin. Plant Biol. 11: 514-520.
44. McWatters, H.G., Bastow, R.M., Hall, A., and Millar, A.J. (2000). The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature 408: 716-720. (Pubitemid 32015986)
45. McWatters, H.G., Kolmos, E., Hall, A., Doyle, M.R., Amasino, R.M., Gyula, P., Nagy, F., Millar, A.J., and Davis, S.J. (2007). ELF4 is required for oscillatory properties of the circadian clock. Plant Physiol. 144: 391-401.
46. Mizoguchi, T., Wheatley, K., Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.R., Carre, I.A., and Coupland, G. (2002). LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev. Cell 2: 629-641.
47. Mizoguchi, T., Wright, L., Fujiwara, S., Cremer, F., Lee, K., Onouchi, H., Mouradov, A., Fowler, S., Kamada, H., Putterill, J., and Coupland, G. (2005). Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis. Plant Cell 17: 2255-2270. (Pubitemid 41672945)
48. Murakami, M., Ashikari, M., Miura, K., Yamashino, T., and Mizuno, T. (2003). The evolutionarily conserved OsPRR quintet: Rice pseudoresponse regulators implicated in circadian rhythm. Plant Cell Physiol. 44: 1229-1236. (Pubitemid 37519082)
49. Murakami, M., Tago, Y., Yamashino, T., and Mizuno, T. (2007). Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol. 48: 110-121. (Pubitemid 46181127)
50. Murfet, I.C (1971). Flowering in Pisum. A three-gene system. Heredity 27: 93-110.
51. Murfet, I.C. (1973). Flowering in Pisum. Hr, a gene for high response to photoperiod. Heredity 31: 157-164.
52. Park, D.H., Somers, D.E., Kim, Y.S., Choy, Y.H., Lim, H.K., Soh, M.S., Kim, H.J., Kay, S.A., and Nam, H.G. (1999). Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. Science 285: 1579-1582. (Pubitemid 29420584)
53. Rameau, C., Denoue, D., Fraval, F., Haurogne, K., Josserand, J., Laucou, V., Batge, S., and Murfet, I.C. (1998). Genetic mapping in pea. 2. Identification of RAPD and SCAR markers linked to genes affecting plant architecture. Theor. Appl. Genet. 97: 916-928.
54. Rodríguez-Falcón, M., Bou, J., and Prat, S. (2006). Seasonal control of tuberization in potato: conserved elements with the flowering response. Annu. Rev. Plant Biol. 57: 151-180.
55. Serikawa, M., Miwa, K., Kondo, T., and Oyama, T. (2008). Functional conservation of clock-related genes in flowering plants: Overexpression and RNA interference analyses of the circadian rhythm in the monocotyledon Lemna gibba. Plant Physiol. 146: 1952-1963. (Pubitemid 352844074)
56. Strayer, C., Oyama, T., Schultz, T.F., Raman, R., Somers, D.E., Mas, P., Panda, S., Kreps, J.A., and Kay, S.A. (2000). Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289: 768-771. (Pubitemid 30650195)
57. Suárez-López, P., Wheatley, K., Robson, F., Onouchi, H., Valverde, F., and Coupland, G. (2001). CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature 410: 1116-1120. (Pubitemid 32391045)
58. Tadege, M., Wen, J., He, J., Tu, H., Kwak, Y., Eschstruth, A., Cayrel, A., Endre, G., Zhao, P.X., Chabaud, M., Ratet, P., and Mysore, K.S. (2008). Large-scale insertional mutagenesis using the Tnt1 retrotransposon in the model legume Medicago truncatula. Plant J. 54: 335-347.
59. Takahashi, Y., Shomura, A., Sasaki, T., and Yano, M. (2001). Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2. Proc. Natl. Acad. Sci. USA 98: 7922-7927.
60. Taylor, S.A., and Murfet, I.C. (1996). Flowering in Pisum: Identification of a new ppd allele and its physiological action as revealed by grafting. Physiol. Plant. 97: 719-723.
61. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997). The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882. (Pubitemid 28022245)
62. Trevaskis, B., Tadege, M., Hemming, M.N., Peacock, W.J., Dennis, E.S., and Sheldon, C. (2007). Short vegetative phase-like MADS-box genes inhibit floral meristem identity in barley. Plant Physiol. 143: 225-235. (Pubitemid 46133631)
63. Turck, F., Fornara, F., and Coupland, G. (2008). Regulation and identity of florigen: FLOWERING LOCUS T moves center stage. Annu. Rev. Plant Biol. 59: 573-594.
64. Turner, A., Beales, J., Faure, S., Dunford, R.P., and Laurie, D.A. (2005). The pseudo-response regulator Ppd-H1 provides adaptation to photoperiod in barley. Science 310: 1031-1034. (Pubitemid 41611918)
65. Wang, Z.-Y., and Tobin, E.M. (1998). Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCAI) gene disrupts circadian rhythms and suppresses its own expression. Cell 93: 1207-1217.
66. Weller, J.L. (2005). Mobile flowering signals in pea. Flowering Newslett. 36: 15-24.
67. Weller, J.L. (2007). Update on the genetics of flowering. Pisum Genet. 39: 1-8.
68. Weller, J.L., Batge, S.L., Smith, J.J., Kerckhoffs, L.H.J., Sineshchekov, V.A., Murfet, I.C, and Reid, J.B. (2004). A dominant mutation in the pea PHYA gene confers enhanced responses to light and impairs the light-dependent degradation of phytochrome A. Plant Physiol. 135: 2186-2195.
69. Weller, J.L., Hecht, V., Vander Schoor, J.K., Davidson, S.E., and Ross, J.J. (2009). Light regulation of gibberellin biosynthesis in pea is mediated through the COP1/HY5 pathway. Plant Cell 21: 800-813.
70. Weller, J.L., Reid, J.B., Taylor, S.A., and Murfet, I.C. (1997). The genetic control of flowering in pea. Trends Plant Sci. 2: 412-418.
71. Yamaguchi, A., Kobayashi, Y., Goto, K., Abe, M., and Araki, T. (2005). TWIN SISTER OF FT (TSF) acts as a floral pathway integrator redundantly with FT. Plant Cell Physiol. 46: 1175-1189. (Pubitemid 41219812)
72. Yanovsky, M.J., and Kay, S.A. (2002). Molecular basis of seasonal time measurement in Arabidopsis. Nature 419: 308-312.
73. Zagotta, M.T., Hicks, K.A., Jacobs, C.l., Young, J.C, Hangarter, R.P., and Meeks-Wagner, D.R. (1996). The Arabidopsis ELF3 gene regulates vegetative photomorphogenesis and the photoperiodic induction of flowering. Plant J. 10: 691-702.
74. Zeilinger, M.N., Farre, E.M., Taylor, S.R., Kay, S.A., and Doyle III, F.J. (2006). A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9. Mol. Syst. Biol. 2: 58.