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Volumn 11, Issue 1, 2016, Pages

Individualized mutation detection in circulating tumor DNA for monitoring colorectal tumor burden using a cancer-associated gene sequencing panel

Author keywords

[No Author keywords available]

Indexed keywords

APC PROTEIN; ATM PROTEIN; B RAF KINASE; CD135 ANTIGEN; CIRCULATING TUMOR DNA; CYCLIN DEPENDENT KINASE INHIBITOR 2A; DNA; EPIDERMAL GROWTH FACTOR RECEPTOR; EPIDERMAL GROWTH FACTOR RECEPTOR 2; EPIDERMAL GROWTH FACTOR RECEPTOR 4; FIBROBLAST GROWTH FACTOR RECEPTOR 1; FIBROBLAST GROWTH FACTOR RECEPTOR 2; FIBROBLAST GROWTH FACTOR RECEPTOR 3; HEPATOCYTE NUCLEAR FACTOR 1ALPHA; ISOCITRATE DEHYDROGENASE 1; ISOCITRATE DEHYDROGENASE 2; JANUS KINASE 2; JANUS KINASE 3; NOTCH1 RECEPTOR; NUCLEOPHOSMIN; PROTEIN KINASE LKB1; PROTEIN P53; PROTEIN RET; SCATTER FACTOR RECEPTOR; SMAD4 PROTEIN; SMOOTHENED PROTEIN; TRANSCRIPTION FACTOR EZH2; UNCLASSIFIED DRUG; UNINDEXED DRUG; UVOMORULIN; VASCULOTROPIN RECEPTOR 2; PRIMER DNA;

EID: 84954052542     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0146275     Document Type: Article
Times cited : (40)

References (36)
  • 1
    • 84875520648 scopus 로고    scopus 로고
    • Analysis of circulating tumor DNA to monitor metastatic breast cancer
    • 23484797
    • Dawson SJ, Tsui DW, Murtaza M, Biggs H, Rueda OM, Chin SF, et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. N Engl J Med. 2013; 368(13):1199-209. doi: 10.1056/NEJMoa1213261 PMID: 23484797
    • (2013) N Engl J Med. , vol.368 , Issue.13 , pp. 1199-1209
    • Dawson, S.J.1    Tsui, D.W.2    Murtaza, M.3    Biggs, H.4    Rueda, O.M.5    Chin, S.F.6
  • 2
    • 51349141191 scopus 로고    scopus 로고
    • Circulating mutant DNA to assess tumor dynamics
    • 18670422
    • Diehl F, Schmidt K, Choti MA, Romans K, Goodman S, Li M, et al. Circulating mutant DNA to assess tumor dynamics. Nat Med. 2008; 14(9):985-90. doi: 10.1038/nm.1789 PMID: 18670422
    • (2008) Nat Med. , vol.14 , Issue.9 , pp. 985-990
    • Diehl, F.1    Schmidt, K.2    Choti, M.A.3    Romans, K.4    Goodman, S.5    Li, M.6
  • 5
    • 84863000299 scopus 로고    scopus 로고
    • The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers
    • 22722843
    • Diaz LA Jr, Williams RT, Wu J, Kinde I, Hecht JR, Berlin J, et al. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. 2012; 486(7404):537-40. doi: 10. 1038/nature11219 PMID: 22722843
    • (2012) Nature. , vol.486 , Issue.7404 , pp. 537-540
    • Diaz, L.A.1    Williams, R.T.2    Wu, J.3    Kinde, I.4    Hecht, J.R.5    Berlin, J.6
  • 6
    • 84879493428 scopus 로고    scopus 로고
    • Noninvasive detection of HER2 amplification with plasma DNA digital PCR
    • 23637122
    • Gevensleben H, Garcia-Murillas I, Graeser MK, Schiavon G, Osin P, Parton M, et al. Noninvasive detection of HER2 amplification with plasma DNA digital PCR. Clin Cancer Res. 2013; 19(12):3276-84. doi: 10.1158/1078-0432.CCR-12-3768 PMID: 23637122
    • (2013) Clin Cancer Res. , vol.19 , Issue.12 , pp. 3276-3284
    • Gevensleben, H.1    Garcia-Murillas, I.2    Graeser, M.K.3    Schiavon, G.4    Osin, P.5    Parton, M.6
  • 7
    • 84896539307 scopus 로고    scopus 로고
    • Noninvasive detection of response and resistance in EGFR-mutant lung cancer using quantitative next-generation genotyping of cell-free plasma DNA
    • 24429876
    • Oxnard GR, Paweletz CP, Kuang Y, Mach SL, O'Connell A, Messineo MM, et al. Noninvasive detection of response and resistance in EGFR-mutant lung cancer using quantitative next-generation genotyping of cell-free plasma DNA. Clin Cancer Res. 2014; 20(6):1698-705. doi: 10.1158/1078-0432.CCR-13-2482 PMID: 24429876
    • (2014) Clin Cancer Res. , vol.20 , Issue.6 , pp. 1698-1705
    • Oxnard, G.R.1    Paweletz, C.P.2    Kuang, Y.3    Mach, S.L.4    O'Connell, A.5    Messineo, M.M.6
  • 8
    • 84906245875 scopus 로고    scopus 로고
    • Changes in mutational status during third-line treatment for metastatic colorectal cancer-results of consecutive measurement of cell free DNA, KRAS and BRAF in the plasma
    • 24659028
    • Spindler KL, Pallisgaard N, Andersen RF, Jakobsen A. Changes in mutational status during third-line treatment for metastatic colorectal cancer-results of consecutive measurement of cell free DNA, KRAS and BRAF in the plasma. Int J Cancer. 2014; 135(9):2215-22. doi: 10.1002/ijc.28863 PMID: 24659028
    • (2014) Int J Cancer. , vol.135 , Issue.9 , pp. 2215-2222
    • Spindler, K.L.1    Pallisgaard, N.2    Andersen, R.F.3    Jakobsen, A.4
  • 9
    • 84857076207 scopus 로고    scopus 로고
    • Quantitative cell-free DNA, KRAS, and BRAF mutations in plasma from patients with metastatic colorectal cancer during treatment with cetuximab and irinotecan
    • 22228631
    • Spindler KL, Pallisgaard N, Vogelius I, Jakobsen A. Quantitative cell-free DNA, KRAS, and BRAF mutations in plasma from patients with metastatic colorectal cancer during treatment with cetuximab and irinotecan. Clin Cancer Res. 2012; 18(4):1177-85. doi: 10.1158/1078-0432.CCR-11-0564 PMID: 22228631
    • (2012) Clin Cancer Res. , vol.18 , Issue.4 , pp. 1177-1185
    • Spindler, K.L.1    Pallisgaard, N.2    Vogelius, I.3    Jakobsen, A.4
  • 10
    • 84861746437 scopus 로고    scopus 로고
    • Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA
    • 22649089
    • Forshew T, Murtaza M, Parkinson C, Gale D, Tsui DW, Kaper F, et al. Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA. Sci Transl Med. 2012; 4 (136):136ra68. doi: 10.1126/scitranslmed.3003726 PMID: 22649089
    • (2012) Sci Transl Med. , vol.4 , Issue.136 , pp. 136ra68
    • Forshew, T.1    Murtaza, M.2    Parkinson, C.3    Gale, D.4    Tsui, D.W.5    Kaper, F.6
  • 11
    • 84877579861 scopus 로고    scopus 로고
    • Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
    • 23563269
    • Murtaza M, Dawson SJ, Tsui DW, Gale D, Forshew T, Piskorz AM, et al. Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA. Nature. 2013; 497(7447):108-12. doi: 10.1038/nature12065 PMID: 23563269
    • (2013) Nature. , vol.497 , Issue.7447 , pp. 108-112
    • Murtaza, M.1    Dawson, S.J.2    Tsui, D.W.3    Gale, D.4    Forshew, T.5    Piskorz, A.M.6
  • 12
    • 23744449894 scopus 로고    scopus 로고
    • Evaluation of the VACUTAINER PPT Plasma Preparation Tube for use with the Bayer VERSANT assay for quantification of human immunodeficiency virus type 1 RNA
    • 16081908
    • Elbeik T, Nassos P, Kipnis P, Haller B, Ng VL. Evaluation of the VACUTAINER PPT Plasma Preparation Tube for use with the Bayer VERSANT assay for quantification of human immunodeficiency virus type 1 RNA. J Clin Microbiol. 2005; 43(8):3769-71. PMID: 16081908
    • (2005) J Clin Microbiol. , vol.43 , Issue.8 , pp. 3769-3771
    • Elbeik, T.1    Nassos, P.2    Kipnis, P.3    Haller, B.4    Ng, V.L.5
  • 13
    • 24744446821 scopus 로고    scopus 로고
    • Discordance between viral loads determined by Roche COBAS AMPLICOR human immunodeficiency virus type 1 monitor (version 1.5) Standard and ultrasensitive assays caused by freezing patient plasma in centrifuged becton-dickinson vacutainer brand plasma preparation tubes
    • 16145119
    • Salimnia H, Moore EC, Crane LR, Macarthur RD, Fairfax MR. Discordance between viral loads determined by Roche COBAS AMPLICOR human immunodeficiency virus type 1 monitor (version 1.5) Standard and ultrasensitive assays caused by freezing patient plasma in centrifuged becton-dickinson vacutainer brand plasma preparation tubes. J Clin Microbiol. 2005; 43(9):4635-9. PMID: 16145119
    • (2005) J Clin Microbiol. , vol.43 , Issue.9 , pp. 4635-4639
    • Salimnia, H.1    Moore, E.C.2    Crane, L.R.3    Macarthur, R.D.4    Fairfax, M.R.5
  • 14
    • 55449094139 scopus 로고    scopus 로고
    • Copy-number analysis of topoisomerase and thymidylate synthase genes in frozen and FFPE DNAs of colorectal cancers
    • 18855534
    • Yu J, Miller R, Zhang W, Sharma M, Holtschlag V, Watson MA, et al. Copy-number analysis of topoisomerase and thymidylate synthase genes in frozen and FFPE DNAs of colorectal cancers. Pharmacogenomics. 2008; 9(10):1459-66. doi: 10.2217/14622416.9.10.1459 PMID: 18855534
    • (2008) Pharmacogenomics. , vol.9 , Issue.10 , pp. 1459-1466
    • Yu, J.1    Miller, R.2    Zhang, W.3    Sharma, M.4    Holtschlag, V.5    Watson, M.A.6
  • 15
    • 84882289495 scopus 로고    scopus 로고
    • Clinical validation of a nextgeneration sequencing screen for mutational hotspots in 46 cancer-related genes
    • 23810757
    • Singh RR, Patel KP, Routbort MJ, Reddy NG, Barkoh BA, Handal B, et al. Clinical validation of a nextgeneration sequencing screen for mutational hotspots in 46 cancer-related genes. J Mol Diagn. 2013; 15(5):607-22. doi: 10.1016/j.jmoldx.2013.05.003 PMID: 23810757
    • (2013) J Mol Diagn. , vol.15 , Issue.5 , pp. 607-622
    • Singh, R.R.1    Patel, K.P.2    Routbort, M.J.3    Reddy, N.G.4    Barkoh, B.A.5    Handal, B.6
  • 16
    • 84941273252 scopus 로고    scopus 로고
    • Molecular markers for colorectal cancer screening
    • 25994221
    • Dickinson BT, Kisiel J, Ahlquist DA, Grady WM. Molecular markers for colorectal cancer screening. Gut. 2015; 64(9):1485-94. doi: 10.1136/gutjnl-2014-308075 PMID: 25994221
    • (2015) Gut. , vol.64 , Issue.9 , pp. 1485-1494
    • Dickinson, B.T.1    Kisiel, J.2    Ahlquist, D.A.3    Grady, W.M.4
  • 17
    • 0023261211 scopus 로고
    • Clonal analysis of human colorectal tumors
    • 2889267
    • Fearon ER, Hamilton SR, Vogelstein B. Clonal analysis of human colorectal tumors. Science. 1987; 238(4824):193-7. PMID: 2889267
    • (1987) Science. , vol.238 , Issue.4824 , pp. 193-197
    • Fearon, E.R.1    Hamilton, S.R.2    Vogelstein, B.3
  • 18
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • 22810696
    • Cancer Genome Atlas N. Comprehensive molecular characterization of human colon and rectal cancer. Nature. 2012; 487(7407):330-7. doi: 10.1038/nature11252 PMID: 22810696
    • (2012) Nature. , vol.487 , Issue.7407 , pp. 330-337
    • Cancer Genome Atlas N1
  • 19
    • 84898542288 scopus 로고    scopus 로고
    • Liquid biopsies: Genotyping circulating tumor DNA
    • 24449238
    • Diaz LA Jr, Bardelli A. Liquid biopsies: genotyping circulating tumor DNA. J Clin Oncol. 2014; 32 (6):579-86. doi: 10.1200/JCO.2012.45.2011 PMID: 24449238
    • (2014) J Clin Oncol. , vol.32 , Issue.6 , pp. 579-586
    • Diaz, L.A.1    Bardelli, A.2
  • 20
    • 84868682387 scopus 로고    scopus 로고
    • Multi-purpose utility of circulating plasma DNA testing in patients with advanced cancers
    • 23144797
    • Perkins G, Yap TA, Pope L, Cassidy AM, Dukes JP, Riisnaes R, et al. Multi-purpose utility of circulating plasma DNA testing in patients with advanced cancers. PLoS One. 2012; 7(11):e47020. doi: 10.1371/journal.pone.0047020 PMID: 23144797
    • (2012) PLoS One. , vol.7 , Issue.11
    • Perkins, G.1    Yap, T.A.2    Pope, L.3    Cassidy, A.M.4    Dukes, J.P.5    Riisnaes, R.6
  • 21
    • 84908877379 scopus 로고    scopus 로고
    • Cell-free DNA in healthy individuals, noncancerous disease and strong prognostic value in colorectal cancer
    • 24798213
    • Spindler KL, Appelt AL, Pallisgaard N, Andersen RF, Brandslund I, Jakobsen A. Cell-free DNA in healthy individuals, noncancerous disease and strong prognostic value in colorectal cancer. Int J Cancer. 2014; 135(12):2984-91. doi: 10.1002/ijc.28946 PMID: 24798213
    • (2014) Int J Cancer. , vol.135 , Issue.12 , pp. 2984-2991
    • Spindler, K.L.1    Appelt, A.L.2    Pallisgaard, N.3    Andersen, R.F.4    Brandslund, I.5    Jakobsen, A.6
  • 22
    • 84899628178 scopus 로고    scopus 로고
    • Colorectal cancer
    • Brenner H, Kloor M, Pox CP. Colorectal cancer. The Lancet. 2014; 383(9927):1490-502.
    • (2014) The Lancet. , vol.383 , Issue.9927 , pp. 1490-1502
    • Brenner, H.1    Kloor, M.2    Pox, C.P.3
  • 23
    • 67650315187 scopus 로고    scopus 로고
    • Improved overall survival with oxaliplatin, fluorouracil, and leucovorin as adjuvant treatment in stage II or III colon cancer in the MOSAIC trial
    • 19451431
    • Andre T, Boni C, Navarro M, Tabernero J, Hickish T, Topham C, et al. Improved overall survival with oxaliplatin, fluorouracil, and leucovorin as adjuvant treatment in stage II or III colon cancer in the MOSAIC trial. J Clin Oncol. 2009; 27(19):3109-16. doi: 10.1200/JCO.2008.20.6771 PMID: 19451431
    • (2009) J Clin Oncol. , vol.27 , Issue.19 , pp. 3109-3116
    • Andre, T.1    Boni, C.2    Navarro, M.3    Tabernero, J.4    Hickish, T.5    Topham, C.6
  • 24
    • 80053619762 scopus 로고    scopus 로고
    • Oxaliplatin as adjuvant therapy for colon cancer: Updated results of NSABP C-07 trial, including survival and subset analyses
    • 21859995
    • Yothers G, O'Connell MJ, Allegra CJ, Kuebler JP, Colangelo LH, Petrelli NJ, et al. Oxaliplatin as adjuvant therapy for colon cancer: updated results of NSABP C-07 trial, including survival and subset analyses. J Clin Oncol. 2011; 29(28):3768-74. doi: 10.1200/JCO.2011.36.4539 PMID: 21859995
    • (2011) J Clin Oncol. , vol.29 , Issue.28 , pp. 3768-3774
    • Yothers, G.1    O'Connell, M.J.2    Allegra, C.J.3    Kuebler, J.P.4    Colangelo, L.H.5    Petrelli, N.J.6
  • 25
    • 38149114081 scopus 로고    scopus 로고
    • Molecular profiling and risk stratification of adenocarcinoma of the colon
    • 18081153
    • Mutch MG. Molecular profiling and risk stratification of adenocarcinoma of the colon. J Surg Oncol. 2007; 96(8):693-703. PMID: 18081153
    • (2007) J Surg Oncol. , vol.96 , Issue.8 , pp. 693-703
    • Mutch, M.G.1
  • 26
    • 84892644378 scopus 로고    scopus 로고
    • Effect of 3 to 5 years of scheduled CEA and CT follow-up to detect recurrence of colorectal cancer: The FACS randomized clinical trial
    • 24430319
    • Primrose JN, Perera R, Gray A, Rose P, Fuller A, Corkhill A, et al. Effect of 3 to 5 years of scheduled CEA and CT follow-up to detect recurrence of colorectal cancer: the FACS randomized clinical trial. JAMA. 2014; 311(3):263-70. doi: 10.1001/jama.2013.285718 PMID: 24430319
    • (2014) JAMA , vol.311 , Issue.3 , pp. 263-270
    • Primrose, J.N.1    Perera, R.2    Gray, A.3    Rose, P.4    Fuller, A.5    Corkhill, A.6
  • 27
    • 0034605752 scopus 로고    scopus 로고
    • ABC of colorectal cancer: Primary treatment-does the surgeon matter?
    • 11061734
    • McArdle C. ABC of colorectal cancer: primary treatment-does the surgeon matter? BMJ. 2000; 321 (7269):1121-3. PMID: 11061734
    • (2000) BMJ , vol.321 , Issue.7269 , pp. 1121-1123
    • McArdle, C.1
  • 28
    • 28044468634 scopus 로고    scopus 로고
    • Detection and quantification of mutations in the plasma of patients with colorectal tumors
    • 16258065
    • Diehl F, Li M, Dressman D, He Y, Shen D, Szabo S, et al. Detection and quantification of mutations in the plasma of patients with colorectal tumors. Proc Natl Acad Sci U S A. 2005; 102(45):16368-73. PMID: 16258065
    • (2005) Proc Natl Acad Sci U S A. , vol.102 , Issue.45 , pp. 16368-16373
    • Diehl, F.1    Li, M.2    Dressman, D.3    He, Y.4    Shen, D.5    Szabo, S.6
  • 29
    • 0042307371 scopus 로고    scopus 로고
    • Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations
    • 12857956
    • Dressman D, Yan H, Traverso G, Kinzler KW, Vogelstein B. Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations. Proc Natl Acad Sci U S A. 2003; 100(15):8817-22. PMID: 12857956
    • (2003) Proc Natl Acad Sci U S A. , vol.100 , Issue.15 , pp. 8817-8822
    • Dressman, D.1    Yan, H.2    Traverso, G.3    Kinzler, K.W.4    Vogelstein, B.5
  • 30
    • 79959353421 scopus 로고    scopus 로고
    • Detection and quantification of rare mutations with massively parallel sequencing
    • 21586637
    • Kinde I, Wu J, Papadopoulos N, Kinzler KW, Vogelstein B. Detection and quantification of rare mutations with massively parallel sequencing. Proc Natl Acad Sci U S A. 2011; 108(23):9530-5. doi: 10. 1073/pnas.1105422108 PMID: 21586637
    • (2011) Proc Natl Acad Sci U S A. , vol.108 , Issue.23 , pp. 9530-9535
    • Kinde, I.1    Wu, J.2    Papadopoulos, N.3    Kinzler, K.W.4    Vogelstein, B.5
  • 31
    • 84863967346 scopus 로고    scopus 로고
    • Ultrasensitive measurement of hotspot mutations in tumor DNA in blood using error-suppressed multiplexed deep sequencing
    • 22581825
    • Narayan A, Carriero NJ, Gettinger SN, Kluytenaar J, Kozak KR, Yock TI, et al. Ultrasensitive measurement of hotspot mutations in tumor DNA in blood using error-suppressed multiplexed deep sequencing. Cancer Res. 2012; 72(14):3492-8. doi: 10.1158/0008-5472.CAN-11-4037 PMID: 22581825
    • (2012) Cancer Res. , vol.72 , Issue.14 , pp. 3492-3498
    • Narayan, A.1    Carriero, N.J.2    Gettinger, S.N.3    Kluytenaar, J.4    Kozak, K.R.5    Yock, T.I.6
  • 33
    • 81255175501 scopus 로고    scopus 로고
    • High-throughput droplet digital PCR system for absolute quantitation of DNA copy number
    • 22035192
    • Hindson BJ, Ness KD, Masquelier DA, Belgrader P, Heredia NJ, Makarewicz AJ, et al. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Anal Chem. 2011; 83 (22):8604-10. doi: 10.1021/ac202028g PMID: 22035192
    • (2011) Anal Chem. , vol.83 , Issue.22 , pp. 8604-8610
    • Hindson, B.J.1    Ness, K.D.2    Masquelier, D.A.3    Belgrader, P.4    Heredia, N.J.5    Makarewicz, A.J.6
  • 34
    • 63449103435 scopus 로고    scopus 로고
    • Single-molecule detection of epidermal growth factor receptor mutations in plasma by microfluidics digital PCR in non-small cell lung cancer patients
    • 19276259
    • Yung TK, Chan KC, Mok TS, Tong J, To KF, Lo YM. Single-molecule detection of epidermal growth factor receptor mutations in plasma by microfluidics digital PCR in non-small cell lung cancer patients. Clin Cancer Res. 2009; 15(6):2076-84. doi: 10.1158/1078-0432.CCR-08-2622 PMID: 19276259
    • (2009) Clin Cancer Res. , vol.15 , Issue.6 , pp. 2076-2084
    • Yung, T.K.1    Chan, K.C.2    Mok, T.S.3    Tong, J.4    To, K.F.5    Lo, Y.M.6
  • 35
    • 41949139438 scopus 로고    scopus 로고
    • Comparative lesion sequencing provides insights into tumor evolution
    • 18337506
    • Jones S, Chen WD, Parmigiani G, Diehl F, Beerenwinkel N, Antal T, et al. Comparative lesion sequencing provides insights into tumor evolution. Proc Natl Acad Sci U S A. 2008; 105(11):4283-8. doi: 10. 1073/pnas.0712345105 PMID: 18337506
    • (2008) Proc Natl Acad Sci U S A. , vol.105 , Issue.11 , pp. 4283-4288
    • Jones, S.1    Chen, W.D.2    Parmigiani, G.3    Diehl, F.4    Beerenwinkel, N.5    Antal, T.6
  • 36
    • 78049398107 scopus 로고    scopus 로고
    • Distant metastasis occurs late during the genetic evolution of pancreatic cancer
    • 20981102
    • Yachida S, Jones S, Bozic I, Antal T, Leary R, Fu B, et al. Distant metastasis occurs late during the genetic evolution of pancreatic cancer. Nature. 2010; 467(7319):1114-7. doi: 10.1038/nature09515 PMID: 20981102
    • (2010) Nature. , vol.467 , Issue.7319 , pp. 1114-1117
    • Yachida, S.1    Jones, S.2    Bozic, I.3    Antal, T.4    Leary, R.5    Fu, B.6


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